Wall clock time and date at job start Tue Mar 31 2020 01:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38624 * 120.75329 * 2 1 4 4 C 1.38592 * 119.35566 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.54369 * 180.02562 * 4 3 2 6 6 N 1.31498 * 120.90526 * 359.73807 * 4 3 2 7 7 C 1.32751 * 121.64466 * 0.53215 * 6 4 3 8 8 C 1.48065 * 119.72780 * 179.74500 * 7 6 4 9 9 O 1.21433 * 120.00051 * 179.72637 * 8 7 6 10 10 O 1.34682 * 120.00131 * 359.44913 * 8 7 6 11 11 C 1.45202 * 116.99919 * 180.26979 * 10 8 7 12 12 C 1.50701 * 109.46859 * 180.02562 * 11 10 8 13 13 O 1.21295 * 120.00148 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99962 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00308 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00438 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99709 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00363 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47301 * 90.00191 * 19 17 15 21 21 H 1.48505 * 109.47343 * 210.00640 * 19 17 15 22 22 H 1.48500 * 109.47005 * 330.00346 * 19 17 15 23 23 C 1.38587 * 120.75719 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47267 * 269.98107 * 1 2 3 25 25 H 1.09006 * 109.46868 * 29.97693 * 1 2 3 26 26 H 1.08994 * 109.46974 * 149.97523 * 1 2 3 27 27 H 1.08000 * 120.32527 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47121 * 90.00310 * 5 4 3 29 29 H 1.08997 * 109.46772 * 209.99648 * 5 4 3 30 30 H 1.09000 * 109.47186 * 330.00216 * 5 4 3 31 31 H 1.08998 * 109.47630 * 300.00518 * 11 10 8 32 32 H 1.09004 * 109.46770 * 60.00922 * 11 10 8 33 33 H 0.96999 * 119.99848 * 0.02562 * 14 12 11 34 34 H 0.97004 * 119.99735 * 179.97438 * 18 17 15 35 35 H 1.08007 * 120.46897 * 359.95840 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1913 0.0000 4 6 3.6013 1.1575 -0.0005 5 6 4.3762 2.4500 0.0000 6 7 4.2490 0.0131 0.0041 7 6 3.6085 -1.1497 -0.0010 8 6 4.3805 -2.4132 -0.0012 9 8 3.7997 -3.4796 -0.0008 10 8 5.7269 -2.3797 -0.0074 11 6 6.4181 -3.6567 -0.0132 12 6 7.9067 -3.4221 -0.0190 13 8 8.3423 -2.2901 -0.0178 14 7 8.7540 -4.4701 -0.0255 15 6 10.1082 -4.2568 -0.0313 16 1 10.4961 -3.2488 -0.0302 17 6 10.9818 -5.3373 -0.0374 18 7 10.5098 -6.5637 -0.0383 19 14 12.8270 -5.0466 -0.0446 20 1 13.3220 -4.9728 1.3535 21 1 13.5017 -6.1656 -0.7502 22 1 13.1243 -3.7702 -0.7429 23 6 2.2157 -1.1909 -0.0005 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6935 2.1366 0.0004 28 1 4.5634 2.7610 1.0278 29 1 5.3261 2.3044 -0.5142 30 1 3.7994 3.2196 -0.5130 31 1 6.1432 -4.2227 0.8768 32 1 6.1351 -4.2188 -0.9032 33 1 8.4056 -5.3754 -0.0268 34 1 11.1197 -7.3180 -0.0429 35 1 1.6958 -2.1376 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801447036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:32 Heat of formation + Delta-G solvation = -90.756278 kcal Electronic energy + Delta-G solvation = -20311.545982 eV Core-core repulsion = 16888.733148 eV Total energy + Delta-G solvation = -3422.812835 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.93938 -39.73932 -38.04704 -36.10592 -34.50433 -33.93983 -33.05081 -31.32442 -28.58351 -28.32448 -27.71568 -25.29423 -24.18122 -21.51203 -20.87274 -19.52088 -18.05781 -17.98147 -16.81661 -16.35212 -16.28853 -16.20316 -15.50846 -14.90662 -14.58995 -14.15603 -13.93423 -13.88559 -13.64124 -13.15873 -13.00489 -12.90476 -12.53777 -12.41058 -12.12341 -12.05858 -11.83843 -11.57850 -11.09760 -10.73391 -10.40406 -10.36696 -10.25299 -9.81751 -9.69631 -9.55440 -9.25622 -8.45173 -8.02901 -6.45289 -3.86943 0.35336 0.94192 2.39460 2.58916 3.16930 3.26394 3.32878 3.58716 3.79996 3.89360 4.15709 4.25414 4.44892 4.66276 4.72521 4.89856 5.05733 5.14260 5.17354 5.19535 5.29155 5.37152 5.45080 5.49722 5.53449 5.73817 5.74533 5.90000 5.91600 6.10541 6.34194 6.54644 7.52541 7.54338 7.90204 8.01023 8.54425 9.12350 9.44792 9.95470 10.72188 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.003195 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.360642 B = 8760.349079 C = 9536.940929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.147 4.147 4 C 0.129 3.871 5 C -0.106 4.106 6 N -0.431 5.431 7 C 0.109 3.891 8 C 0.518 3.482 9 O -0.505 6.505 10 O -0.299 6.299 11 C 0.056 3.944 12 C 0.440 3.560 13 O -0.570 6.570 14 N -0.555 5.555 15 C -0.300 4.300 16 H 0.106 0.894 17 C 0.024 3.976 18 N -0.899 5.899 19 Si 0.934 3.066 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.268 1.268 23 C -0.117 4.117 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.141 0.859 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.395 0.605 34 H 0.273 0.727 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.687 12.282 0.083 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.167 4.167 4 C -0.011 4.011 5 C -0.163 4.163 6 N -0.144 5.144 7 C -0.028 4.028 8 C 0.361 3.639 9 O -0.393 6.393 10 O -0.211 6.211 11 C -0.021 4.021 12 C 0.225 3.775 13 O -0.453 6.453 14 N -0.192 5.192 15 C -0.430 4.430 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.540 5.540 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.137 4.137 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.159 0.841 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.228 0.772 34 H 0.083 0.917 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.490 12.487 0.081 22.312 hybrid contribution -0.219 -0.818 0.027 0.847 sum -18.709 11.669 0.108 22.050 Atomic orbital electron populations 1.20825 0.89394 1.03679 1.03207 1.20296 0.97175 0.92288 0.96062 1.22164 0.94820 0.98963 1.00746 1.21446 0.91060 0.93995 0.94644 1.20763 1.00785 0.91161 1.03565 1.67595 1.40546 0.97276 1.08949 1.20033 0.90238 0.90565 1.01954 1.20845 0.82007 0.87996 0.73092 1.90829 1.71497 1.30720 1.46297 1.86740 1.17914 1.34599 1.81854 1.22851 0.92781 0.82887 1.03592 1.19288 0.85951 0.86415 0.85862 1.90584 1.77749 1.22273 1.54730 1.41690 1.06190 1.07172 1.64192 1.19728 0.80107 0.95140 1.47976 0.87629 1.25300 1.00952 0.94549 0.97025 1.69619 1.36301 0.98072 1.49974 0.85801 0.81579 0.78125 0.78460 1.20296 1.20850 1.19281 1.21959 0.93041 0.99932 0.98773 0.90215 0.90726 0.90632 0.84105 0.90009 0.89673 0.90548 0.89372 0.89366 0.77187 0.91696 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.06 36.00 0.36 -0.26 16 2 C -0.05 -0.46 5.91 -104.35 -0.62 -1.08 16 3 C -0.15 -1.31 9.45 -39.31 -0.37 -1.68 16 4 C 0.13 1.52 6.78 -82.60 -0.56 0.96 16 5 C -0.11 -0.93 10.17 36.01 0.37 -0.57 16 6 N -0.43 -6.84 10.03 -6.07 -0.06 -6.90 16 7 C 0.11 1.69 6.75 -83.03 -0.56 1.13 16 8 C 0.52 9.38 7.95 34.76 0.28 9.65 16 9 O -0.50 -9.25 16.11 -19.21 -0.31 -9.55 16 10 O -0.30 -6.25 9.57 -47.12 -0.45 -6.70 16 11 C 0.06 1.14 5.95 36.01 0.21 1.36 16 12 C 0.44 11.09 7.86 -10.99 -0.09 11.00 16 13 O -0.57 -16.58 16.08 -14.11 -0.23 -16.80 16 14 N -0.55 -14.43 5.29 -10.96 -0.06 -14.49 16 15 C -0.30 -8.48 9.68 -14.94 -0.14 -8.62 16 16 H 0.11 3.11 7.16 -52.48 -0.38 2.74 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 19 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.12 -1.38 9.34 -39.04 -0.36 -1.75 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 26 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 35 H 0.15 1.59 7.64 -52.48 -0.40 1.19 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -34.58 320.44 -6.19 -40.77 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.03 Total: 5.91 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -1.58 Total: 10.68 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.61 Total: -45.20 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.99 Total: -33.06 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.58 -6.19 -40.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801447036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.988 kcal (2) G-P(sol) polarization free energy of solvation -34.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds