Wall clock time and date at job start Tue Mar 31 2020 01:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38624 * 120.75329 * 2 1 4 4 C 1.38592 * 119.35566 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.54369 * 180.02562 * 4 3 2 6 6 N 1.31498 * 120.90526 * 359.73807 * 4 3 2 7 7 C 1.32751 * 121.64466 * 0.53215 * 6 4 3 8 8 C 1.48065 * 119.72780 * 179.74500 * 7 6 4 9 9 O 1.21433 * 120.00051 * 179.72637 * 8 7 6 10 10 O 1.34682 * 120.00131 * 359.44913 * 8 7 6 11 11 C 1.45202 * 116.99919 * 180.26979 * 10 8 7 12 12 C 1.50701 * 109.46859 * 180.02562 * 11 10 8 13 13 O 1.21295 * 120.00148 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99962 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00308 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00438 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99709 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00363 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47301 * 90.00191 * 19 17 15 21 21 H 1.48505 * 109.47343 * 210.00640 * 19 17 15 22 22 H 1.48500 * 109.47005 * 330.00346 * 19 17 15 23 23 C 1.38587 * 120.75719 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47267 * 269.98107 * 1 2 3 25 25 H 1.09006 * 109.46868 * 29.97693 * 1 2 3 26 26 H 1.08994 * 109.46974 * 149.97523 * 1 2 3 27 27 H 1.08000 * 120.32527 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47121 * 90.00310 * 5 4 3 29 29 H 1.08997 * 109.46772 * 209.99648 * 5 4 3 30 30 H 1.09000 * 109.47186 * 330.00216 * 5 4 3 31 31 H 1.08998 * 109.47630 * 300.00518 * 11 10 8 32 32 H 1.09004 * 109.46770 * 60.00922 * 11 10 8 33 33 H 0.96999 * 119.99848 * 0.02562 * 14 12 11 34 34 H 0.97004 * 119.99735 * 179.97438 * 18 17 15 35 35 H 1.08007 * 120.46897 * 359.95840 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1913 0.0000 4 6 3.6013 1.1575 -0.0005 5 6 4.3762 2.4500 0.0000 6 7 4.2490 0.0131 0.0041 7 6 3.6085 -1.1497 -0.0010 8 6 4.3805 -2.4132 -0.0012 9 8 3.7997 -3.4796 -0.0008 10 8 5.7269 -2.3797 -0.0074 11 6 6.4181 -3.6567 -0.0132 12 6 7.9067 -3.4221 -0.0190 13 8 8.3423 -2.2901 -0.0178 14 7 8.7540 -4.4701 -0.0255 15 6 10.1082 -4.2568 -0.0313 16 1 10.4961 -3.2488 -0.0302 17 6 10.9818 -5.3373 -0.0374 18 7 10.5098 -6.5637 -0.0383 19 14 12.8270 -5.0466 -0.0446 20 1 13.3220 -4.9728 1.3535 21 1 13.5017 -6.1656 -0.7502 22 1 13.1243 -3.7702 -0.7429 23 6 2.2157 -1.1909 -0.0005 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6935 2.1366 0.0004 28 1 4.5634 2.7610 1.0278 29 1 5.3261 2.3044 -0.5142 30 1 3.7994 3.2196 -0.5130 31 1 6.1432 -4.2227 0.8768 32 1 6.1351 -4.2188 -0.9032 33 1 8.4056 -5.3754 -0.0268 34 1 11.1197 -7.3180 -0.0429 35 1 1.6958 -2.1376 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801447036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:31 Heat of formation + Delta-G solvation = -114.184927 kcal Electronic energy + Delta-G solvation = -20312.561925 eV Core-core repulsion = 16888.733148 eV Total energy + Delta-G solvation = -3423.828777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.07164 -41.00749 -39.99262 -37.64090 -36.06314 -35.25236 -33.95277 -33.43709 -30.24353 -29.11810 -28.38579 -26.92539 -25.70069 -22.38496 -22.05887 -21.47326 -20.10361 -19.27234 -18.18237 -17.85093 -17.58409 -17.27121 -16.93649 -16.53304 -16.05140 -15.83767 -15.41122 -15.07960 -14.62506 -14.12839 -14.05812 -13.81337 -13.75705 -13.57710 -13.40385 -13.11010 -13.10244 -12.95037 -12.62616 -12.49765 -12.13346 -12.06235 -11.94692 -11.60170 -10.66268 -10.57705 -10.52492 -10.14376 -10.13552 -8.54115 -6.05012 -0.63010 0.12716 1.18899 1.20513 1.34640 1.42258 1.55921 1.84093 2.27466 2.63204 2.79016 3.10902 3.14822 3.55816 3.61613 3.84462 3.92881 3.95053 4.09435 4.18061 4.28458 4.44835 4.58561 4.69048 4.78536 4.83598 4.94273 5.04829 5.11889 5.23695 5.26870 5.35059 5.60735 5.86256 6.30656 6.47575 6.84607 7.00747 7.36742 7.91178 8.63111 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.003195 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.360642 B = 8760.349079 C = 9536.940929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.045 4.045 3 C -0.126 4.126 4 C 0.111 3.889 5 C -0.104 4.104 6 N -0.482 5.482 7 C 0.071 3.929 8 C 0.516 3.484 9 O -0.515 6.515 10 O -0.326 6.326 11 C 0.067 3.933 12 C 0.436 3.564 13 O -0.617 6.617 14 N -0.556 5.556 15 C -0.339 4.339 16 H 0.083 0.917 17 C -0.008 4.008 18 N -0.915 5.915 19 Si 1.000 3.000 20 H -0.268 1.268 21 H -0.267 1.267 22 H -0.271 1.271 23 C -0.114 4.114 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.187 0.813 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.401 0.599 34 H 0.282 0.718 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.663 13.296 0.105 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.029 4.029 5 C -0.161 4.161 6 N -0.195 5.195 7 C -0.064 4.064 8 C 0.360 3.640 9 O -0.404 6.404 10 O -0.240 6.240 11 C -0.010 4.010 12 C 0.223 3.777 13 O -0.503 6.503 14 N -0.194 5.194 15 C -0.468 4.468 16 H 0.101 0.899 17 C -0.209 4.209 18 N -0.555 5.555 19 Si 0.822 3.178 20 H -0.194 1.194 21 H -0.192 1.192 22 H -0.196 1.196 23 C -0.134 4.134 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.204 0.796 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.235 0.765 34 H 0.091 0.909 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.498 13.457 0.105 24.521 hybrid contribution 0.285 -1.066 0.023 1.104 sum -20.213 12.391 0.128 23.709 Atomic orbital electron populations 1.20941 0.86151 1.05180 1.04514 1.20787 0.99199 0.91157 0.94110 1.22637 0.93545 1.00836 0.97492 1.22026 0.92899 0.93511 0.94500 1.20865 1.00042 0.90918 1.04276 1.67459 1.42530 0.98544 1.11014 1.19904 0.91211 0.89525 1.05737 1.21443 0.80881 0.89348 0.72292 1.90791 1.71211 1.31346 1.47085 1.86735 1.19863 1.34728 1.82663 1.22651 0.89337 0.83424 1.05632 1.20046 0.87960 0.85449 0.84285 1.90542 1.79159 1.24010 1.56599 1.41711 1.05927 1.07668 1.64050 1.19726 0.81520 0.94786 1.50798 0.89912 1.26148 1.05234 0.93983 0.95551 1.69675 1.38080 0.98670 1.49075 0.84839 0.75891 0.78199 0.78860 1.19353 1.19188 1.19608 1.22151 0.91519 1.01684 0.98063 0.88775 0.88339 0.90114 0.79551 0.89196 0.92070 0.86845 0.87202 0.87194 0.76489 0.90881 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.06 71.24 0.72 -0.03 16 2 C -0.04 -0.69 5.91 -19.69 -0.12 -0.80 16 3 C -0.13 -1.82 9.45 22.45 0.21 -1.60 16 4 C 0.11 2.51 6.78 42.69 0.29 2.80 16 5 C -0.10 -1.71 10.17 71.24 0.72 -0.99 16 6 N -0.48 -15.77 10.03 -173.12 -1.74 -17.50 16 7 C 0.07 2.27 6.75 41.88 0.28 2.55 16 8 C 0.52 19.40 7.95 70.43 0.56 19.96 16 9 O -0.52 -19.21 16.11 20.05 0.32 -18.89 16 10 O -0.33 -14.30 9.57 -49.53 -0.47 -14.77 16 11 C 0.07 2.78 5.95 71.24 0.42 3.20 16 12 C 0.44 22.86 7.86 87.66 0.69 23.55 16 13 O -0.62 -37.74 16.08 15.72 0.25 -37.48 16 14 N -0.56 -29.85 5.29 -306.99 -1.62 -31.48 16 15 C -0.34 -19.74 9.68 84.04 0.81 -18.92 16 16 H 0.08 5.11 7.16 -2.91 -0.02 5.09 16 17 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 18 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 19 Si 1.00 43.07 29.55 68.60 2.03 45.10 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 C -0.11 -2.59 9.34 22.62 0.21 -2.38 16 24 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.10 0.25 8.10 -2.38 -0.02 0.23 16 26 H 0.08 0.51 8.10 -2.39 -0.02 0.49 16 27 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 0.97 8.08 -2.39 -0.02 0.95 16 31 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 32 H 0.11 4.05 8.14 -2.38 -0.02 4.03 16 33 H 0.40 20.13 7.90 -92.71 -0.73 19.39 16 34 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.16 3.21 7.64 -2.91 -0.02 3.19 16 Total: -1.00 -78.65 320.44 4.72 -73.93 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.40 Total: 23.10 kcal Atomic # 6 Polarization: 22.07 SS G_CDS: 5.27 Total: 27.34 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -3.08 Total: -98.33 kcal Atomic # 8 Polarization: -71.24 SS G_CDS: 0.10 Total: -71.14 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -78.65 4.72 -73.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801447036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.255 kcal (2) G-P(sol) polarization free energy of solvation -78.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds