Wall clock time and date at job start Mon Mar 30 2020 23:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48497 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47063 * 299.99843 * 3 2 1 6 6 H 1.48495 * 109.47345 * 59.99600 * 3 2 1 7 7 C 1.38952 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99384 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00269 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99753 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00330 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47441 * 180.02562 * 12 10 9 14 14 C 1.34774 * 119.99917 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00211 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99893 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.47321 * 305.00515 * 16 14 13 18 18 O 1.42897 * 109.47379 * 185.00004 * 16 14 13 19 19 C 1.50703 * 109.47293 * 64.99864 * 16 14 13 20 20 C 1.38235 * 120.00292 * 265.00268 * 19 16 14 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 16 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 84.97561 * 19 16 14 25 25 H 0.97004 * 119.99962 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00004 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46799 * 60.00204 * 12 10 9 28 28 H 1.09003 * 109.47388 * 300.00590 * 12 10 9 29 29 H 0.97002 * 119.99858 * 0.02562 * 13 12 10 30 30 H 0.96694 * 114.00150 * 300.00520 * 18 16 14 31 31 H 1.08001 * 119.99730 * 359.97438 * 20 19 16 32 32 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 34 34 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.00455 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2438 -4.8630 0.0011 13 7 2.1958 -5.9765 0.0016 14 6 1.7465 -7.2471 0.0017 15 8 0.5540 -7.4688 0.0008 16 6 2.7257 -8.3926 0.0016 17 1 3.4099 -8.2857 -0.8402 18 8 2.0152 -9.6268 -0.1158 19 6 3.5087 -8.3842 1.2892 20 6 4.7421 -7.7623 1.3442 21 6 5.4599 -7.7542 2.5255 22 6 4.9442 -8.3672 3.6520 23 6 3.7102 -8.9879 3.5974 24 6 2.9933 -8.9980 2.4155 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 0.6168 -4.9209 -0.8887 28 1 0.6174 -4.9205 0.8913 29 1 3.1494 -5.7992 0.0019 30 1 1.3868 -9.7886 0.6012 31 1 5.1447 -7.2828 0.4642 32 1 6.4237 -7.2687 2.5684 33 1 5.5070 -8.3648 4.5737 34 1 3.3074 -9.4672 4.4774 35 1 2.0297 -9.4838 2.3726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:15 Heat of formation + Delta-G solvation = -101.411677 kcal Electronic energy + Delta-G solvation = -20801.309232 eV Core-core repulsion = 17378.034345 eV Total energy + Delta-G solvation = -3423.274887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45272 -38.97646 -38.17598 -36.42841 -34.53362 -33.78226 -31.85994 -31.39454 -31.02477 -28.45827 -26.39744 -24.40750 -22.78354 -22.03243 -20.39191 -19.68112 -18.37485 -17.95667 -17.59080 -16.35114 -16.01383 -15.57851 -15.26123 -15.07488 -14.84042 -14.44154 -14.13541 -13.95348 -13.68956 -13.50219 -13.39464 -12.91486 -12.31298 -12.20934 -11.95996 -11.77718 -11.66709 -11.25129 -11.17000 -10.94335 -10.43475 -10.35443 -9.78795 -9.68118 -9.09022 -8.92945 -8.83812 -8.67301 -8.13751 -6.54753 -3.96841 1.08349 1.23275 2.62042 3.07881 3.16224 3.21397 3.28253 3.59209 3.69744 4.08145 4.23464 4.40285 4.63139 4.78327 4.82757 4.86547 4.95481 5.08603 5.13858 5.30261 5.46518 5.72638 5.83449 5.84150 5.89906 6.01911 6.25454 6.30230 6.34398 6.56089 6.78578 7.25771 7.43116 7.67946 7.88323 8.27347 8.41469 9.01225 9.35431 9.82978 10.62162 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023040 B = 0.003837 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.982227 B = 7296.063041 C = 8054.829448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.107 3.893 13 N -0.698 5.698 14 C 0.488 3.512 15 O -0.540 6.540 16 C 0.137 3.863 17 H 0.134 0.866 18 O -0.530 6.530 19 C -0.119 4.119 20 C -0.102 4.102 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.106 4.106 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.411 0.589 30 H 0.382 0.618 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 -15.552 4.673 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.021 4.021 13 N -0.353 5.353 14 C 0.272 3.728 15 O -0.418 6.418 16 C 0.074 3.926 17 H 0.151 0.849 18 O -0.336 6.336 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.134 4.134 23 C -0.135 4.135 24 C -0.124 4.124 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.250 0.750 30 H 0.231 0.769 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.307 -15.575 4.130 17.304 hybrid contribution -0.174 1.167 0.552 1.303 sum 6.133 -14.409 4.682 16.344 Atomic orbital electron populations 1.69621 1.06041 1.28473 1.49276 1.25332 0.95663 0.99963 0.96732 0.85754 0.79680 0.80780 0.77857 1.19116 1.20580 1.20590 1.19783 0.93496 0.81958 1.48213 0.87593 1.41799 1.09494 1.04485 1.62501 1.19704 0.88294 0.84949 0.85734 1.90493 1.13653 1.86790 1.57414 1.20994 0.91906 0.85828 1.03326 1.45690 1.11754 1.04587 1.73279 1.21253 0.90131 0.84532 0.76844 1.90707 1.16298 1.84645 1.50171 1.20653 0.91438 0.83729 0.96747 0.84907 1.86606 1.58278 1.35695 1.52999 1.20222 0.96007 1.00496 0.95275 1.21038 0.93793 0.98329 0.98871 1.21173 1.00187 0.99021 0.92745 1.21226 0.95963 0.97693 0.98520 1.21105 0.95092 0.99732 0.97616 1.20869 0.99771 0.99290 0.92492 0.91602 0.77037 0.89670 0.89812 0.75048 0.76856 0.85322 0.85536 0.85908 0.85825 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 13.05 55.50 0.72 -22.98 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.31 -8.21 9.68 -14.94 -0.14 -8.36 16 8 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.55 -13.47 5.29 -10.96 -0.06 -13.53 16 10 C 0.43 9.69 7.85 -10.99 -0.09 9.61 16 11 O -0.60 -15.00 15.24 5.55 0.08 -14.92 16 12 C 0.11 1.96 6.15 -5.20 -0.03 1.93 16 13 N -0.70 -11.46 5.48 -61.47 -0.34 -11.80 16 14 C 0.49 7.59 7.15 -10.99 -0.08 7.51 16 15 O -0.54 -9.95 16.32 -14.31 -0.23 -10.19 16 16 C 0.14 1.68 3.62 -29.03 -0.11 1.58 16 17 H 0.13 1.40 8.05 -51.93 -0.42 0.98 16 18 O -0.53 -6.58 12.79 -55.09 -0.70 -7.29 16 19 C -0.12 -1.38 4.95 -104.62 -0.52 -1.90 16 20 C -0.10 -1.13 9.51 -39.59 -0.38 -1.50 16 21 C -0.11 -1.17 10.05 -39.59 -0.40 -1.56 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.11 -1.15 9.33 -39.58 -0.37 -1.52 16 25 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.41 6.60 7.27 -40.82 -0.30 6.30 16 30 H 0.38 3.89 7.14 45.56 0.33 4.21 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 1.11 6.61 -52.49 -0.35 0.77 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -32.09 313.90 -6.92 -39.02 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -3.11 Total: 18.36 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -3.00 Total: 3.28 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.33 Total: -48.31 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.85 Total: -32.39 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.09 -6.92 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.395 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds