Wall clock time and date at job start Mon Mar 30 2020 23:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48497 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47063 * 299.99843 * 3 2 1 6 6 H 1.48495 * 109.47345 * 59.99600 * 3 2 1 7 7 C 1.38952 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99384 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00269 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99753 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00330 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47441 * 180.02562 * 12 10 9 14 14 C 1.34774 * 119.99917 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00211 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99893 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.47321 * 305.00515 * 16 14 13 18 18 O 1.42897 * 109.47379 * 185.00004 * 16 14 13 19 19 C 1.50703 * 109.47293 * 64.99864 * 16 14 13 20 20 C 1.38235 * 120.00292 * 265.00268 * 19 16 14 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 16 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 84.97561 * 19 16 14 25 25 H 0.97004 * 119.99962 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00004 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46799 * 60.00204 * 12 10 9 28 28 H 1.09003 * 109.47388 * 300.00590 * 12 10 9 29 29 H 0.97002 * 119.99858 * 0.02562 * 13 12 10 30 30 H 0.96694 * 114.00150 * 300.00520 * 18 16 14 31 31 H 1.08001 * 119.99730 * 359.97438 * 20 19 16 32 32 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 34 34 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.00455 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2438 -4.8630 0.0011 13 7 2.1958 -5.9765 0.0016 14 6 1.7465 -7.2471 0.0017 15 8 0.5540 -7.4688 0.0008 16 6 2.7257 -8.3926 0.0016 17 1 3.4099 -8.2857 -0.8402 18 8 2.0152 -9.6268 -0.1158 19 6 3.5087 -8.3842 1.2892 20 6 4.7421 -7.7623 1.3442 21 6 5.4599 -7.7542 2.5255 22 6 4.9442 -8.3672 3.6520 23 6 3.7102 -8.9879 3.5974 24 6 2.9933 -8.9980 2.4155 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 0.6168 -4.9209 -0.8887 28 1 0.6174 -4.9205 0.8913 29 1 3.1494 -5.7992 0.0019 30 1 1.3868 -9.7886 0.6012 31 1 5.1447 -7.2828 0.4642 32 1 6.4237 -7.2687 2.5684 33 1 5.5070 -8.3648 4.5737 34 1 3.3074 -9.4672 4.4774 35 1 2.0297 -9.4838 2.3726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:15 Heat of formation + Delta-G solvation = -125.121276 kcal Electronic energy + Delta-G solvation = -20802.337358 eV Core-core repulsion = 17378.034345 eV Total energy + Delta-G solvation = -3424.303013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.57774 -40.31915 -39.60809 -37.45765 -36.26501 -35.40003 -33.40568 -32.71553 -31.78828 -29.82242 -27.71229 -26.15670 -23.55763 -22.96727 -21.57214 -21.42404 -20.13399 -19.31006 -18.63077 -17.57060 -17.28302 -16.92774 -16.70309 -16.37713 -16.25580 -15.80835 -15.45772 -15.34291 -14.96226 -14.62519 -14.25262 -13.99619 -13.83844 -13.56375 -13.55921 -13.16402 -12.92004 -12.65833 -12.45409 -12.11615 -12.02053 -11.87337 -11.58870 -10.91980 -10.57916 -10.29450 -10.10190 -9.86655 -9.71557 -8.52171 -6.02360 0.27517 0.45679 1.34181 1.40266 1.42919 1.56715 1.88856 1.90428 2.29866 2.77375 3.08557 3.15112 3.33552 3.47533 3.69474 3.85249 4.07969 4.19160 4.24079 4.28404 4.38047 4.38797 4.57060 4.70101 4.96730 5.09613 5.16533 5.37753 5.49417 5.50847 5.58474 5.90297 6.03699 6.27222 6.46076 6.51363 6.99488 7.02750 7.42418 7.92322 8.64975 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023040 B = 0.003837 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.982227 B = 7296.063041 C = 8054.829448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.621 6.621 12 C 0.118 3.882 13 N -0.698 5.698 14 C 0.490 3.510 15 O -0.570 6.570 16 C 0.148 3.852 17 H 0.151 0.849 18 O -0.537 6.537 19 C -0.133 4.133 20 C -0.115 4.115 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.120 4.120 25 H 0.280 0.720 26 H 0.398 0.602 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.414 0.586 30 H 0.390 0.610 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -15.845 5.251 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.509 6.509 12 C -0.009 4.009 13 N -0.353 5.353 14 C 0.277 3.723 15 O -0.450 6.450 16 C 0.086 3.914 17 H 0.168 0.832 18 O -0.344 6.344 19 C -0.134 4.134 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.138 4.138 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.253 0.747 30 H 0.241 0.759 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.877 -15.893 4.713 17.947 hybrid contribution -0.342 1.177 0.410 1.292 sum 6.535 -14.716 5.122 16.897 Atomic orbital electron populations 1.69685 1.07049 1.29591 1.49333 1.26124 0.96506 1.02683 0.95742 0.84812 0.78173 0.76717 0.78291 1.19351 1.19670 1.19664 1.19781 0.92986 0.83485 1.50306 0.89487 1.41849 1.09584 1.04636 1.63370 1.20364 0.88148 0.85839 0.83683 1.90471 1.15020 1.87481 1.57956 1.20818 0.91786 0.84080 1.04249 1.45698 1.11517 1.04510 1.73585 1.21879 0.90310 0.84691 0.75430 1.90690 1.17811 1.85018 1.51469 1.20632 0.90640 0.82090 0.98076 0.83194 1.86589 1.58620 1.35474 1.53700 1.20202 0.96384 1.01672 0.95114 1.21260 0.93891 0.98476 0.99708 1.21475 1.00921 0.99226 0.92758 1.21585 0.96080 0.96859 0.99263 1.21435 0.95139 0.99572 0.98070 1.21145 1.00497 0.99407 0.92725 0.91069 0.76748 0.88630 0.88902 0.74728 0.75879 0.84460 0.84029 0.83671 0.83667 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.32 13.05 21.66 0.28 -48.03 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 41.28 29.55 68.60 2.03 43.30 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.34 -18.32 9.68 84.04 0.81 -17.50 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -27.76 5.29 -306.98 -1.62 -29.39 16 10 C 0.43 19.67 7.85 87.66 0.69 20.35 16 11 O -0.62 -31.40 15.24 -3.06 -0.05 -31.45 16 12 C 0.12 4.27 6.15 85.63 0.53 4.80 16 13 N -0.70 -22.38 5.48 -466.79 -2.56 -24.94 16 14 C 0.49 14.79 7.15 87.66 0.63 15.42 16 15 O -0.57 -20.55 16.32 15.95 0.26 -20.29 16 16 C 0.15 3.45 3.62 29.10 0.11 3.56 16 17 H 0.15 2.93 8.05 -2.38 -0.02 2.91 16 18 O -0.54 -12.66 12.79 -129.99 -1.66 -14.33 16 19 C -0.13 -2.92 4.95 -19.87 -0.10 -3.02 16 20 C -0.12 -2.41 9.51 22.27 0.21 -2.19 16 21 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 22 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 23 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 24 C -0.12 -2.42 9.33 22.27 0.21 -2.21 16 25 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 26 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 27 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 28 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.41 13.01 7.27 -92.71 -0.67 12.34 16 30 H 0.39 7.53 7.14 -74.06 -0.53 7.00 16 31 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.13 2.25 6.61 -2.91 -0.02 2.23 16 Total: -1.00 -67.34 313.90 0.12 -67.22 By element: Atomic # 1 Polarization: 45.55 SS G_CDS: -0.78 Total: 44.77 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 4.22 Total: 13.12 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -3.90 Total: -102.36 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -1.45 Total: -66.06 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -67.34 0.12 -67.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.901 kcal (2) G-P(sol) polarization free energy of solvation -67.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds