Wall clock time and date at job start Mon Mar 30 2020 23:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00513 * 2 1 4 4 H 1.48494 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46664 * 299.99780 * 3 2 1 6 6 H 1.48497 * 109.47236 * 59.99398 * 3 2 1 7 7 C 1.38948 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00602 * 180.02562 * 7 2 1 9 9 N 1.37110 * 119.99926 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99765 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00043 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47317 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00266 * 180.02562 * 13 12 10 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.47260 * 55.00037 * 16 14 13 18 18 O 1.42902 * 109.46921 * 174.99818 * 16 14 13 19 19 C 1.50703 * 109.47259 * 294.99659 * 16 14 13 20 20 C 1.38234 * 119.99664 * 279.72937 * 19 16 14 21 21 C 1.38240 * 119.99654 * 179.81009 * 20 19 16 22 22 C 1.38233 * 119.99722 * 0.39757 * 21 20 19 23 23 C 1.38234 * 120.00355 * 359.85429 * 22 21 20 24 24 C 1.38229 * 119.99756 * 99.99924 * 19 16 14 25 25 H 0.97002 * 119.99686 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99966 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.47103 * 60.00237 * 12 10 9 28 28 H 1.09000 * 109.47247 * 300.00115 * 12 10 9 29 29 H 0.96999 * 119.99691 * 359.97438 * 13 12 10 30 30 H 0.96699 * 113.99932 * 59.99379 * 18 16 14 31 31 H 1.08001 * 120.00577 * 359.97438 * 20 19 16 32 32 H 1.07997 * 119.99943 * 180.23035 * 21 20 19 33 33 H 1.08001 * 120.00157 * 179.83373 * 22 21 20 34 34 H 1.07996 * 120.00182 * 179.97438 * 23 22 21 35 35 H 1.07998 * 120.00428 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8895 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0011 12 6 1.2435 -4.8630 0.0022 13 7 2.1954 -5.9765 0.0027 14 6 1.7461 -7.2472 0.0027 15 8 0.5538 -7.4688 -0.0026 16 6 2.7254 -8.3927 0.0027 17 1 3.4096 -8.2858 0.8444 18 8 2.0148 -9.6269 0.1202 19 6 3.5081 -8.3844 -1.2852 20 6 2.9519 -8.9120 -2.4354 21 6 3.6683 -8.9009 -3.6176 22 6 4.9441 -8.3695 -3.6475 23 6 5.5023 -7.8466 -2.4961 24 6 4.7843 -7.8542 -1.3148 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3907 0.0016 27 1 0.6165 -4.9209 -0.8876 28 1 0.6172 -4.9205 0.8924 29 1 3.1491 -5.7993 0.0022 30 1 1.3863 -9.7887 -0.5967 31 1 1.9565 -9.3306 -2.4111 32 1 3.2323 -9.3097 -4.5171 33 1 5.5049 -8.3632 -4.5705 34 1 6.4992 -7.4319 -2.5195 35 1 5.2204 -7.4456 -0.4153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:18 Heat of formation + Delta-G solvation = -125.300946 kcal Electronic energy + Delta-G solvation = -20796.281225 eV Core-core repulsion = 17371.970421 eV Total energy + Delta-G solvation = -3424.310804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.57237 -40.31858 -39.60689 -37.44842 -36.26329 -35.39616 -33.40472 -32.71368 -31.79631 -29.82383 -27.70311 -26.15321 -23.57217 -22.97111 -21.56095 -21.42340 -20.13223 -19.29458 -18.62076 -17.57511 -17.28013 -16.92707 -16.70217 -16.37802 -16.25536 -15.81264 -15.44552 -15.34246 -14.94872 -14.63944 -14.25313 -13.99636 -13.83629 -13.56035 -13.55573 -13.16591 -12.91979 -12.67450 -12.45505 -12.11622 -12.02386 -11.86644 -11.58836 -10.90480 -10.57881 -10.29207 -10.10145 -9.86605 -9.72405 -8.52173 -6.02418 0.27604 0.45677 1.34211 1.40420 1.42910 1.56725 1.88891 1.90552 2.29896 2.76948 3.08576 3.15094 3.35459 3.48126 3.69014 3.85222 4.07975 4.19268 4.23816 4.28844 4.38129 4.38829 4.57163 4.69966 4.96750 5.09793 5.16830 5.37782 5.49402 5.50949 5.58406 5.90390 6.03742 6.27404 6.46072 6.51486 6.99746 7.02777 7.42430 7.92340 8.64983 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022881 B = 0.003836 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.433768 B = 7298.027505 C = 8046.289974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.621 6.621 12 C 0.119 3.881 13 N -0.698 5.698 14 C 0.490 3.510 15 O -0.570 6.570 16 C 0.148 3.852 17 H 0.151 0.849 18 O -0.538 6.538 19 C -0.133 4.133 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.114 4.114 25 H 0.280 0.720 26 H 0.398 0.602 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.414 0.586 30 H 0.390 0.610 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -15.812 -5.189 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.509 6.509 12 C -0.009 4.009 13 N -0.353 5.353 14 C 0.277 3.723 15 O -0.450 6.450 16 C 0.086 3.914 17 H 0.168 0.832 18 O -0.344 6.344 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.132 4.132 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.253 0.747 30 H 0.241 0.759 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.950 -15.860 -4.653 17.930 hybrid contribution -0.363 1.165 -0.424 1.292 sum 6.587 -14.695 -5.077 16.885 Atomic orbital electron populations 1.69686 1.07047 1.29589 1.49341 1.26124 0.96507 1.02682 0.95739 0.84811 0.78170 0.76716 0.78294 1.19356 1.19662 1.19666 1.19782 0.92982 0.83487 1.50310 0.89494 1.41855 1.09583 1.04636 1.63381 1.20368 0.88146 0.85844 0.83670 1.90472 1.15029 1.87482 1.57950 1.20816 0.91784 0.84077 1.04241 1.45693 1.11512 1.04508 1.73578 1.21883 0.90309 0.84691 0.75426 1.90687 1.17822 1.85017 1.51471 1.20642 0.90666 0.82081 0.98056 0.83203 1.86590 1.58605 1.35519 1.53685 1.20192 0.95991 1.02320 0.94865 1.21142 1.00467 0.99559 0.92679 1.21426 0.95037 0.99650 0.98168 1.21586 0.95702 0.97268 0.99214 1.21488 1.01073 0.99194 0.92613 1.21289 0.93503 0.98531 0.99856 0.91069 0.76746 0.88898 0.88643 0.74727 0.75907 0.85184 0.83774 0.83681 0.83904 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.33 13.05 21.66 0.28 -48.05 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 41.29 29.55 68.60 2.03 43.32 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.34 -18.33 9.68 84.04 0.81 -17.52 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -27.78 5.29 -306.98 -1.62 -29.41 16 10 C 0.43 19.68 7.85 87.66 0.69 20.37 16 11 O -0.62 -31.45 15.24 -3.06 -0.05 -31.50 16 12 C 0.12 4.28 6.15 85.63 0.53 4.81 16 13 N -0.70 -22.38 5.48 -466.79 -2.56 -24.93 16 14 C 0.49 14.77 7.15 87.66 0.63 15.40 16 15 O -0.57 -20.52 16.32 15.97 0.26 -20.26 16 16 C 0.15 3.45 3.62 29.10 0.11 3.55 16 17 H 0.15 2.91 8.00 -2.39 -0.02 2.89 16 18 O -0.54 -12.73 12.84 -130.00 -1.67 -14.40 16 19 C -0.13 -2.91 4.92 -19.87 -0.10 -3.01 16 20 C -0.12 -2.47 9.32 22.27 0.21 -2.26 16 21 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 22 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 23 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 24 C -0.11 -2.33 9.67 22.27 0.22 -2.11 16 25 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 26 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 27 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 28 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.41 13.04 7.44 -92.71 -0.69 12.35 16 30 H 0.39 7.61 7.24 -74.06 -0.54 7.07 16 31 H 0.13 2.30 6.78 -2.91 -0.02 2.28 16 32 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.14 2.41 8.04 -2.91 -0.02 2.38 16 Total: -1.00 -67.39 314.42 0.10 -67.29 By element: Atomic # 1 Polarization: 45.59 SS G_CDS: -0.80 Total: 44.79 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 4.22 Total: 13.15 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -3.90 Total: -102.39 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: -1.46 Total: -66.16 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -67.39 0.10 -67.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.012 kcal (2) G-P(sol) polarization free energy of solvation -67.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds