Wall clock time and date at job start Mon Mar 30 2020 23:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99629 * 2 1 4 4 H 1.48504 * 109.47119 * 269.99727 * 3 2 1 5 5 H 1.48500 * 109.47572 * 29.99975 * 3 2 1 6 6 H 1.48500 * 109.47309 * 149.99872 * 3 2 1 7 7 C 1.37873 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00404 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99894 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47376 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.47672 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00219 * 180.02562 * 11 10 9 13 13 O 1.20823 * 119.99909 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99921 * 180.02562 * 12 11 10 15 15 H 1.08995 * 115.56362 * 34.30842 * 14 12 11 16 16 C 1.53006 * 117.49412 * 248.62100 * 14 12 11 17 17 C 1.52999 * 117.49906 * 179.97438 * 14 12 11 18 18 H 1.09002 * 117.49803 * 214.97533 * 17 14 12 19 19 C 1.50700 * 117.51845 * 0.02562 * 17 14 12 20 20 C 1.38247 * 119.97056 * 59.61400 * 19 17 14 21 21 C 1.38197 * 120.02240 * 179.72761 * 20 19 17 22 22 C 1.38463 * 119.97548 * 0.52323 * 21 20 19 23 23 F 1.35097 * 120.02509 * 179.73372 * 22 21 20 24 24 C 1.38459 * 119.94812 * 359.74295 * 22 21 20 25 25 C 1.38199 * 119.97260 * 0.02562 * 24 22 21 26 26 H 0.96998 * 120.00221 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47397 * 59.99763 * 9 7 2 28 28 H 1.09003 * 109.47277 * 300.00334 * 9 7 2 29 29 H 1.09006 * 109.47222 * 59.99446 * 10 9 7 30 30 H 1.09003 * 109.47019 * 300.00282 * 10 9 7 31 31 H 1.09004 * 117.49624 * 145.02403 * 16 14 12 32 32 H 1.08992 * 117.49824 * 359.97438 * 16 14 12 33 33 H 1.07997 * 119.99011 * 359.97293 * 20 19 17 34 34 H 1.08007 * 120.01493 * 180.25135 * 21 20 19 35 35 H 1.08000 * 120.01476 * 179.97438 * 24 22 21 36 36 H 1.08002 * 119.98489 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0010 11 8 5.4737 -2.6363 0.0009 12 6 6.0831 -3.8323 0.0003 13 8 5.4251 -4.8456 0.0003 14 6 7.5880 -3.9111 0.0008 15 1 8.1000 -3.1250 0.5558 16 6 8.2680 -4.4412 -1.2632 17 6 8.2226 -5.3033 0.0006 18 1 9.1520 -5.4329 0.5551 19 6 7.2952 -6.4912 -0.0006 20 6 6.3935 -6.6623 -1.0345 21 6 5.5464 -7.7542 -1.0396 22 6 5.5936 -8.6712 -0.0032 23 9 4.7622 -9.7361 -0.0045 24 6 6.4933 -8.4958 1.0345 25 6 7.3427 -7.4057 1.0350 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6798 0.8911 28 1 3.8752 -0.6802 -0.8888 29 1 3.6586 -3.1501 -0.8892 30 1 3.6580 -3.1504 0.8907 31 1 9.2274 -4.0038 -1.5397 32 1 7.6269 -4.7333 -2.0948 33 1 6.3537 -5.9445 -1.8404 34 1 4.8448 -7.8899 -1.8494 35 1 6.5307 -9.2102 1.8436 36 1 8.0443 -7.2685 1.8445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806274092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:02 Heat of formation + Delta-G solvation = -78.753342 kcal Electronic energy + Delta-G solvation = -20743.795568 eV Core-core repulsion = 17301.583258 eV Total energy + Delta-G solvation = -3442.212310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.85337 -40.76595 -39.04982 -36.99359 -35.75053 -33.32696 -31.14963 -30.85896 -30.19422 -26.10776 -24.17135 -23.98710 -22.90161 -21.09055 -20.66548 -19.93377 -18.08391 -17.55640 -16.86653 -16.23107 -16.09308 -16.01223 -15.54035 -15.00381 -14.95462 -14.28484 -14.15841 -13.62302 -13.45768 -13.17692 -13.01176 -12.80705 -12.53195 -12.15556 -11.75155 -11.55394 -11.29592 -11.09283 -10.85047 -10.75954 -10.69505 -10.50087 -10.01346 -9.93670 -9.72531 -9.37074 -8.93885 -8.64250 -8.27274 -6.14648 -4.16081 1.08738 1.30638 2.31811 2.96775 3.26133 3.33639 3.37873 3.40619 3.80541 4.26466 4.30258 4.36794 4.51312 4.60383 4.67672 4.88727 4.92004 5.11256 5.18836 5.20167 5.37750 5.41690 5.58638 5.70468 5.88019 5.94012 5.95102 5.99725 6.14334 6.25351 6.42706 6.48781 6.77884 6.90924 7.16991 7.19757 7.60431 8.12931 8.37781 8.86908 9.44799 10.97955 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.003856 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.374700 B = 7259.299377 C = 8206.484169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.084 3.916 11 O -0.358 6.358 12 C 0.478 3.522 13 O -0.497 6.497 14 C -0.155 4.155 15 H 0.139 0.861 16 C -0.145 4.145 17 C -0.082 4.082 18 H 0.128 0.872 19 C -0.064 4.064 20 C -0.026 4.026 21 C -0.158 4.158 22 C 0.098 3.902 23 F -0.145 7.145 24 C -0.164 4.164 25 C -0.082 4.082 26 H 0.266 0.734 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.172 -12.868 -0.872 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.012 3.988 11 O -0.274 6.274 12 C 0.321 3.679 13 O -0.386 6.386 14 C -0.174 4.174 15 H 0.156 0.844 16 C -0.182 4.182 17 C -0.100 4.100 18 H 0.146 0.854 19 C -0.064 4.064 20 C -0.044 4.044 21 C -0.177 4.177 22 C 0.079 3.921 23 F -0.124 7.124 24 C -0.183 4.183 25 C -0.100 4.100 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.716 -13.061 -0.867 23.666 hybrid contribution -0.159 0.799 0.110 0.822 sum 19.557 -12.262 -0.757 23.095 Atomic orbital electron populations 1.69894 1.06294 1.27229 1.50059 1.24934 0.94760 0.99180 0.94103 0.86749 0.80420 0.83280 0.78740 1.20045 1.21143 1.18776 1.20839 0.88273 0.95040 1.52441 0.90684 1.19622 0.97002 0.90185 0.97843 1.23372 0.72183 1.01545 1.01720 1.86468 1.26235 1.32145 1.82590 1.22456 0.90060 0.82206 0.73143 1.90715 1.66963 1.35690 1.45194 1.21881 0.90083 0.99699 1.05784 0.84355 1.23231 1.02479 1.01216 0.91245 1.21156 0.99100 0.87839 1.01900 0.85430 1.18895 0.97226 0.94887 0.95400 1.20621 0.92268 0.94191 0.97326 1.20993 1.01979 0.95445 0.99254 1.17698 0.91649 0.85924 0.96872 1.91475 1.70142 1.54148 1.96599 1.20950 0.97924 1.00493 0.98913 1.20642 0.98566 0.93247 0.97531 0.92411 0.95417 0.95851 0.91790 0.91714 0.86652 0.87621 0.85936 0.85138 0.85165 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.53 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 10 C 0.08 1.79 5.40 37.15 0.20 1.99 16 11 O -0.36 -6.63 10.22 -39.25 -0.40 -7.03 16 12 C 0.48 7.56 7.59 36.01 0.27 7.83 16 13 O -0.50 -8.78 11.43 -18.75 -0.21 -9.00 16 14 C -0.16 -1.67 6.30 -91.77 -0.58 -2.25 16 15 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.14 -1.18 9.58 -26.70 -0.26 -1.44 16 17 C -0.08 -0.73 6.04 -91.74 -0.55 -1.29 16 18 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.06 -0.73 4.38 -104.62 -0.46 -1.19 16 20 C -0.03 -0.33 6.16 -39.59 -0.24 -0.57 16 21 C -0.16 -2.08 10.03 -39.51 -0.40 -2.48 16 22 C 0.10 1.30 7.30 -39.42 -0.29 1.02 16 23 F -0.14 -2.02 17.27 2.25 0.04 -1.98 16 24 C -0.16 -1.91 10.03 -39.51 -0.40 -2.31 16 25 C -0.08 -0.88 9.73 -39.59 -0.39 -1.27 16 26 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 28 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 29 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 30 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 31 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.92 6.18 -51.93 -0.32 0.60 16 33 H 0.12 1.47 5.75 -52.49 -0.30 1.16 16 34 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -32.25 311.07 -7.78 -40.03 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.36 Total: -1.14 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -3.64 Total: -15.66 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.77 Total: -26.60 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.62 Total: -16.02 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.25 -7.78 -40.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806274092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.724 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds