Wall clock time and date at job start Mon Mar 30 2020 23:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99629 * 2 1 4 4 H 1.48504 * 109.47119 * 269.99727 * 3 2 1 5 5 H 1.48500 * 109.47572 * 29.99975 * 3 2 1 6 6 H 1.48500 * 109.47309 * 149.99872 * 3 2 1 7 7 C 1.37873 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00404 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99894 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47376 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.47672 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00219 * 180.02562 * 11 10 9 13 13 O 1.20823 * 119.99909 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99921 * 180.02562 * 12 11 10 15 15 H 1.08995 * 115.56362 * 34.30842 * 14 12 11 16 16 C 1.53006 * 117.49412 * 248.62100 * 14 12 11 17 17 C 1.52999 * 117.49906 * 179.97438 * 14 12 11 18 18 H 1.09002 * 117.49803 * 214.97533 * 17 14 12 19 19 C 1.50700 * 117.51845 * 0.02562 * 17 14 12 20 20 C 1.38247 * 119.97056 * 59.61400 * 19 17 14 21 21 C 1.38197 * 120.02240 * 179.72761 * 20 19 17 22 22 C 1.38463 * 119.97548 * 0.52323 * 21 20 19 23 23 F 1.35097 * 120.02509 * 179.73372 * 22 21 20 24 24 C 1.38459 * 119.94812 * 359.74295 * 22 21 20 25 25 C 1.38199 * 119.97260 * 0.02562 * 24 22 21 26 26 H 0.96998 * 120.00221 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47397 * 59.99763 * 9 7 2 28 28 H 1.09003 * 109.47277 * 300.00334 * 9 7 2 29 29 H 1.09006 * 109.47222 * 59.99446 * 10 9 7 30 30 H 1.09003 * 109.47019 * 300.00282 * 10 9 7 31 31 H 1.09004 * 117.49624 * 145.02403 * 16 14 12 32 32 H 1.08992 * 117.49824 * 359.97438 * 16 14 12 33 33 H 1.07997 * 119.99011 * 359.97293 * 20 19 17 34 34 H 1.08007 * 120.01493 * 180.25135 * 21 20 19 35 35 H 1.08000 * 120.01476 * 179.97438 * 24 22 21 36 36 H 1.08002 * 119.98489 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0010 11 8 5.4737 -2.6363 0.0009 12 6 6.0831 -3.8323 0.0003 13 8 5.4251 -4.8456 0.0003 14 6 7.5880 -3.9111 0.0008 15 1 8.1000 -3.1250 0.5558 16 6 8.2680 -4.4412 -1.2632 17 6 8.2226 -5.3033 0.0006 18 1 9.1520 -5.4329 0.5551 19 6 7.2952 -6.4912 -0.0006 20 6 6.3935 -6.6623 -1.0345 21 6 5.5464 -7.7542 -1.0396 22 6 5.5936 -8.6712 -0.0032 23 9 4.7622 -9.7361 -0.0045 24 6 6.4933 -8.4958 1.0345 25 6 7.3427 -7.4057 1.0350 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6798 0.8911 28 1 3.8752 -0.6802 -0.8888 29 1 3.6586 -3.1501 -0.8892 30 1 3.6580 -3.1504 0.8907 31 1 9.2274 -4.0038 -1.5397 32 1 7.6269 -4.7333 -2.0948 33 1 6.3537 -5.9445 -1.8404 34 1 4.8448 -7.8899 -1.8494 35 1 6.5307 -9.2102 1.8436 36 1 8.0443 -7.2685 1.8445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806274092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:02 Heat of formation + Delta-G solvation = -96.330454 kcal Electronic energy + Delta-G solvation = -20744.557769 eV Core-core repulsion = 17301.583258 eV Total energy + Delta-G solvation = -3442.974511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.89413 -41.87573 -40.13218 -38.06230 -36.94135 -35.40381 -32.82150 -32.05343 -31.14012 -27.74195 -25.56064 -24.82240 -23.80701 -22.63793 -21.93586 -21.00124 -19.32848 -18.88507 -18.40988 -17.55509 -17.39934 -17.14704 -16.58751 -16.36114 -15.97142 -15.75601 -15.31222 -15.02577 -14.71999 -14.44689 -14.16983 -14.10037 -13.70749 -13.32053 -13.25551 -12.95367 -12.51971 -12.45360 -12.38735 -11.91917 -11.82723 -11.61266 -11.57175 -11.51007 -11.41641 -11.25756 -10.82976 -9.88156 -9.21961 -8.36198 -6.44965 0.14946 0.38595 1.16980 1.37096 1.39133 1.51889 1.72833 2.33212 2.51824 2.98699 3.01291 3.34705 3.47635 3.74710 3.76922 3.86791 3.92746 4.00094 4.15041 4.18844 4.30151 4.36227 4.54685 4.61084 4.81324 4.87490 5.01791 5.02877 5.07414 5.14343 5.23075 5.26848 5.34581 5.49030 5.59604 5.63747 6.00293 6.13355 6.61202 6.81266 7.20511 8.80126 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.003856 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.374700 B = 7259.299377 C = 8206.484169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.032 0.968 9 C -0.003 4.003 10 C 0.098 3.902 11 O -0.361 6.361 12 C 0.469 3.531 13 O -0.522 6.522 14 C -0.167 4.167 15 H 0.166 0.834 16 C -0.128 4.128 17 C -0.074 4.074 18 H 0.168 0.832 19 C -0.071 4.071 20 C -0.041 4.041 21 C -0.179 4.179 22 C 0.070 3.930 23 F -0.155 7.155 24 C -0.167 4.167 25 C -0.081 4.081 26 H 0.271 0.729 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.153 0.847 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.150 0.850 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.128 -11.509 -0.312 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.167 1.167 7 C -0.582 4.582 8 H 0.050 0.950 9 C -0.040 4.040 10 C 0.024 3.976 11 O -0.278 6.278 12 C 0.314 3.686 13 O -0.411 6.411 14 C -0.186 4.186 15 H 0.183 0.817 16 C -0.165 4.165 17 C -0.091 4.091 18 H 0.186 0.814 19 C -0.071 4.071 20 C -0.059 4.059 21 C -0.198 4.198 22 C 0.051 3.949 23 F -0.134 7.134 24 C -0.186 4.186 25 C -0.099 4.099 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.171 0.829 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.168 0.832 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 23.695 -11.728 -0.313 26.441 hybrid contribution -1.425 0.237 -0.079 1.447 sum 22.270 -11.491 -0.392 25.063 Atomic orbital electron populations 1.70047 1.08417 1.28687 1.51332 1.25980 0.95671 1.03683 0.93316 0.85576 0.79514 0.77488 0.79616 1.18652 1.20569 1.16662 1.21123 0.90843 0.93706 1.52564 0.94986 1.19449 0.94035 0.92092 0.98421 1.22836 0.74524 0.99549 1.00655 1.86456 1.23966 1.34114 1.83287 1.23628 0.92248 0.80859 0.71868 1.90728 1.68073 1.36147 1.46184 1.22040 0.85983 1.01856 1.08702 0.81695 1.23450 1.03264 0.99681 0.90086 1.21415 0.99319 0.85531 1.02868 0.81430 1.19296 0.97058 0.95976 0.94815 1.20769 0.92890 0.94007 0.98247 1.21148 1.02678 0.96267 0.99659 1.18004 0.92720 0.86174 0.98003 1.91438 1.70629 1.54602 1.96732 1.21291 0.97310 1.01287 0.98691 1.21081 0.98492 0.92286 0.98049 0.92018 0.94706 0.94715 0.92789 0.93030 0.82897 0.88739 0.86005 0.85437 0.83234 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 2 C 0.01 0.67 5.47 84.65 0.46 1.13 16 3 Si 0.96 43.32 27.47 68.60 1.88 45.21 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 7 C -0.54 -31.84 9.66 25.60 0.25 -31.59 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 9 C 0.00 -0.12 4.42 29.85 0.13 0.01 16 10 C 0.10 4.21 5.40 71.98 0.39 4.60 16 11 O -0.36 -12.98 10.22 -51.37 -0.53 -13.51 16 12 C 0.47 14.21 7.59 71.24 0.54 14.75 16 13 O -0.52 -18.45 11.43 21.97 0.25 -18.20 16 14 C -0.17 -2.98 6.30 -11.54 -0.07 -3.05 16 15 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 16 C -0.13 -1.58 9.58 30.61 0.29 -1.28 16 17 C -0.07 -1.01 6.04 -11.52 -0.07 -1.08 16 18 H 0.17 1.02 8.14 -2.39 -0.02 1.00 16 19 C -0.07 -1.48 4.38 -19.86 -0.09 -1.57 16 20 C -0.04 -1.04 6.16 22.26 0.14 -0.90 16 21 C -0.18 -4.94 10.03 22.31 0.22 -4.72 16 22 C 0.07 1.92 7.30 22.38 0.16 2.08 16 23 F -0.16 -4.51 17.27 44.97 0.78 -3.74 16 24 C -0.17 -3.73 10.03 22.31 0.22 -3.50 16 25 C -0.08 -1.55 9.73 22.26 0.22 -1.33 16 26 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.03 1.61 7.20 -2.38 -0.02 1.60 16 28 H 0.03 1.58 7.57 -2.39 -0.02 1.56 16 29 H 0.05 2.38 8.13 -2.38 -0.02 2.36 16 30 H 0.05 2.31 8.13 -2.39 -0.02 2.29 16 31 H 0.15 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.09 1.42 6.18 -2.39 -0.01 1.40 16 33 H 0.12 2.96 5.75 -2.91 -0.02 2.94 16 34 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 35 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -73.09 311.07 6.52 -66.56 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.04 Total: 8.98 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 2.80 Total: -26.46 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.30 Total: -58.85 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.27 Total: -31.71 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.78 Total: -3.74 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -73.09 6.52 -66.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806274092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.766 kcal (2) G-P(sol) polarization free energy of solvation -73.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds