Wall clock time and date at job start Mon Mar 30 2020 23:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00146 * 2 1 4 4 H 1.48493 * 109.47145 * 240.00642 * 3 2 1 5 5 H 1.48500 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47324 * 119.99825 * 3 2 1 7 7 C 1.37881 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99381 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46808 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47108 * 180.02562 * 10 9 7 12 12 C 1.34227 * 117.00055 * 180.02562 * 11 10 9 13 13 O 1.20831 * 120.00135 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99993 * 179.97438 * 12 11 10 15 15 H 1.08991 * 115.55210 * 325.66554 * 14 12 11 16 16 C 1.53001 * 117.49730 * 111.37733 * 14 12 11 17 17 C 1.53002 * 117.49699 * 180.02562 * 14 12 11 18 18 H 1.09001 * 117.49890 * 0.02562 * 17 14 12 19 19 C 1.50694 * 117.50157 * 145.02248 * 17 14 12 20 20 C 1.38241 * 119.97560 * 239.99961 * 19 17 14 21 21 C 1.38205 * 120.02917 * 179.97438 * 20 19 17 22 22 C 1.38462 * 119.97060 * 0.02562 * 21 20 19 23 23 F 1.35093 * 120.02496 * 179.97438 * 22 21 20 24 24 C 1.38458 * 119.95069 * 0.02562 * 22 21 20 25 25 C 1.38201 * 119.97488 * 359.97277 * 24 22 21 26 26 H 0.96997 * 119.99759 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47368 * 60.00270 * 9 7 2 28 28 H 1.08993 * 109.47756 * 300.00011 * 9 7 2 29 29 H 1.08998 * 109.46849 * 60.00059 * 10 9 7 30 30 H 1.09000 * 109.47339 * 300.00351 * 10 9 7 31 31 H 1.09002 * 117.50040 * 0.02562 * 16 14 12 32 32 H 1.08994 * 117.49878 * 214.97794 * 16 14 12 33 33 H 1.07998 * 119.98964 * 359.97438 * 20 19 17 34 34 H 1.07996 * 120.01353 * 179.74365 * 21 20 19 35 35 H 1.07997 * 120.01365 * 180.02562 * 24 22 21 36 36 H 1.07993 * 119.99092 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 8 1.5194 -4.9195 -0.0024 12 6 2.2504 -6.0452 -0.0030 13 8 3.4571 -5.9820 -0.0035 14 6 1.5662 -7.3880 -0.0031 15 1 0.6296 -7.4384 0.5519 16 6 1.6858 -8.2416 -1.2672 17 6 2.4548 -8.6335 -0.0032 18 1 3.5342 -8.4818 -0.0028 19 6 1.9673 -9.8361 0.7629 20 6 2.7208 -10.3429 1.8053 21 6 2.2745 -11.4455 2.5091 22 6 1.0724 -12.0428 2.1694 23 9 0.6354 -13.1209 2.8562 24 6 0.3192 -11.5350 1.1245 25 6 0.7675 -10.4324 0.4222 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8726 -3.6047 0.8877 30 1 2.8714 -3.6039 -0.8922 31 1 2.2596 -7.8323 -2.0986 32 1 0.8275 -8.8537 -1.5441 33 1 3.6585 -9.8771 2.0699 34 1 2.8653 -11.8437 3.3207 35 1 -0.6188 -11.9999 0.8589 36 1 0.1799 -10.0359 -0.3926 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806274093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:05 Heat of formation + Delta-G solvation = -95.068600 kcal Electronic energy + Delta-G solvation = -19785.880576 eV Core-core repulsion = 16342.960783 eV Total energy + Delta-G solvation = -3442.919793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.18518 -40.51686 -39.46224 -37.07883 -35.73511 -33.36136 -31.51234 -30.67498 -30.20802 -25.89829 -24.28617 -24.10261 -23.09651 -21.18054 -20.82175 -19.99761 -18.17979 -17.69747 -16.72047 -16.32434 -15.98855 -15.93436 -15.85281 -15.78681 -14.90750 -14.55475 -13.94403 -13.82707 -13.46641 -13.23768 -12.99780 -12.84872 -12.37919 -12.22980 -11.87501 -11.36909 -11.28153 -11.07982 -10.97401 -10.78611 -10.74289 -10.68107 -10.25910 -9.67517 -9.65299 -9.46127 -9.33517 -8.77523 -8.45841 -6.11954 -4.16628 0.72533 0.88261 2.33981 2.93894 3.22162 3.28939 3.33082 3.36653 3.72766 3.93192 4.25873 4.35476 4.39232 4.46120 4.55839 4.61286 4.87189 4.91527 5.11923 5.20181 5.24506 5.38468 5.57452 5.62055 5.74295 5.75179 5.78965 5.92428 6.05914 6.06443 6.20448 6.53013 6.60691 6.94847 7.53500 7.60119 7.84665 8.15786 8.23831 8.88711 9.47820 10.99529 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040686 B = 0.002503 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.027884 B =11182.660239 C =11278.933108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.351 6.351 12 C 0.485 3.515 13 O -0.518 6.518 14 C -0.150 4.150 15 H 0.137 0.863 16 C -0.140 4.140 17 C -0.087 4.087 18 H 0.131 0.869 19 C -0.061 4.061 20 C -0.079 4.079 21 C -0.151 4.151 22 C 0.092 3.908 23 F -0.142 7.142 24 C -0.150 4.150 25 C -0.089 4.089 26 H 0.264 0.736 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 -24.014 0.970 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.267 6.267 12 C 0.328 3.672 13 O -0.408 6.408 14 C -0.169 4.169 15 H 0.155 0.845 16 C -0.177 4.177 17 C -0.105 4.105 18 H 0.149 0.851 19 C -0.061 4.061 20 C -0.097 4.097 21 C -0.170 4.170 22 C 0.073 3.927 23 F -0.120 7.120 24 C -0.169 4.169 25 C -0.107 4.107 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.681 -23.850 0.998 23.930 hybrid contribution 0.418 0.855 0.234 0.980 sum 2.099 -22.996 1.232 23.124 Atomic orbital electron populations 1.69961 1.06103 1.27137 1.49639 1.24985 0.94921 0.99392 0.94828 0.86525 0.79485 0.82450 0.78795 1.20055 1.21101 1.20048 1.20939 0.93140 0.90119 1.52397 0.92301 1.19168 0.94178 0.88978 0.98910 1.23680 0.96414 0.78671 1.00976 1.86513 1.42281 1.15655 1.82262 1.22353 0.85857 0.86344 0.72614 1.90624 1.15659 1.88223 1.46258 1.21886 1.02354 0.87042 1.05619 0.84547 1.23221 1.02881 1.00528 0.91086 1.21157 0.99323 0.90897 0.99166 0.85096 1.19171 0.94913 0.95767 0.96272 1.20905 1.00024 0.94780 0.93949 1.21155 0.95854 0.97774 1.02174 1.17761 0.94853 0.86455 0.93599 1.91499 1.89492 1.52659 1.78372 1.21130 1.01037 0.98401 0.96303 1.20984 0.95594 0.94761 0.99390 0.92619 0.95328 0.95328 0.92252 0.92269 0.87258 0.86888 0.84594 0.84574 0.84576 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.07 1.67 5.40 37.16 0.20 1.87 16 11 O -0.35 -7.01 10.22 -39.25 -0.40 -7.41 16 12 C 0.49 8.29 7.74 36.01 0.28 8.57 16 13 O -0.52 -9.95 16.01 -18.75 -0.30 -10.25 16 14 C -0.15 -1.80 5.93 -91.77 -0.54 -2.34 16 15 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 16 C -0.14 -1.28 9.56 -26.70 -0.26 -1.54 16 17 C -0.09 -0.87 5.56 -91.74 -0.51 -1.38 16 18 H 0.13 1.40 7.67 -51.93 -0.40 1.01 16 19 C -0.06 -0.55 5.61 -104.62 -0.59 -1.14 16 20 C -0.08 -0.68 9.73 -39.59 -0.39 -1.06 16 21 C -0.15 -1.27 10.03 -39.51 -0.40 -1.67 16 22 C 0.09 0.85 7.30 -39.42 -0.29 0.56 16 23 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 24 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 25 C -0.09 -0.71 9.30 -39.59 -0.37 -1.08 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 30 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.11 0.74 6.17 -51.93 -0.32 0.42 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.14 0.82 6.02 -52.49 -0.32 0.51 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -31.53 322.67 -8.28 -39.81 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.38 Total: -2.52 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -3.81 Total: -13.83 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.70 Total: -17.66 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.53 -8.28 -39.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806274093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.259 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds