Wall clock time and date at job start Mon Mar 30 2020 23:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00146 * 2 1 4 4 H 1.48493 * 109.47145 * 240.00642 * 3 2 1 5 5 H 1.48500 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47324 * 119.99825 * 3 2 1 7 7 C 1.37881 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99381 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46808 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47108 * 180.02562 * 10 9 7 12 12 C 1.34227 * 117.00055 * 180.02562 * 11 10 9 13 13 O 1.20831 * 120.00135 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99993 * 179.97438 * 12 11 10 15 15 H 1.08991 * 115.55210 * 325.66554 * 14 12 11 16 16 C 1.53001 * 117.49730 * 111.37733 * 14 12 11 17 17 C 1.53002 * 117.49699 * 180.02562 * 14 12 11 18 18 H 1.09001 * 117.49890 * 0.02562 * 17 14 12 19 19 C 1.50694 * 117.50157 * 145.02248 * 17 14 12 20 20 C 1.38241 * 119.97560 * 239.99961 * 19 17 14 21 21 C 1.38205 * 120.02917 * 179.97438 * 20 19 17 22 22 C 1.38462 * 119.97060 * 0.02562 * 21 20 19 23 23 F 1.35093 * 120.02496 * 179.97438 * 22 21 20 24 24 C 1.38458 * 119.95069 * 0.02562 * 22 21 20 25 25 C 1.38201 * 119.97488 * 359.97277 * 24 22 21 26 26 H 0.96997 * 119.99759 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47368 * 60.00270 * 9 7 2 28 28 H 1.08993 * 109.47756 * 300.00011 * 9 7 2 29 29 H 1.08998 * 109.46849 * 60.00059 * 10 9 7 30 30 H 1.09000 * 109.47339 * 300.00351 * 10 9 7 31 31 H 1.09002 * 117.50040 * 0.02562 * 16 14 12 32 32 H 1.08994 * 117.49878 * 214.97794 * 16 14 12 33 33 H 1.07998 * 119.98964 * 359.97438 * 20 19 17 34 34 H 1.07996 * 120.01353 * 179.74365 * 21 20 19 35 35 H 1.07997 * 120.01365 * 180.02562 * 24 22 21 36 36 H 1.07993 * 119.99092 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 8 1.5194 -4.9195 -0.0024 12 6 2.2504 -6.0452 -0.0030 13 8 3.4571 -5.9820 -0.0035 14 6 1.5662 -7.3880 -0.0031 15 1 0.6296 -7.4384 0.5519 16 6 1.6858 -8.2416 -1.2672 17 6 2.4548 -8.6335 -0.0032 18 1 3.5342 -8.4818 -0.0028 19 6 1.9673 -9.8361 0.7629 20 6 2.7208 -10.3429 1.8053 21 6 2.2745 -11.4455 2.5091 22 6 1.0724 -12.0428 2.1694 23 9 0.6354 -13.1209 2.8562 24 6 0.3192 -11.5350 1.1245 25 6 0.7675 -10.4324 0.4222 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8726 -3.6047 0.8877 30 1 2.8714 -3.6039 -0.8922 31 1 2.2596 -7.8323 -2.0986 32 1 0.8275 -8.8537 -1.5441 33 1 3.6585 -9.8771 2.0699 34 1 2.8653 -11.8437 3.3207 35 1 -0.6188 -11.9999 0.8589 36 1 0.1799 -10.0359 -0.3926 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806274093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:04 Heat of formation + Delta-G solvation = -110.556288 kcal Electronic energy + Delta-G solvation = -19786.552172 eV Core-core repulsion = 16342.960783 eV Total energy + Delta-G solvation = -3443.591389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.89528 -41.72979 -40.37407 -38.21443 -37.02136 -35.45890 -32.39589 -32.12251 -31.21751 -27.57254 -25.74068 -24.84302 -23.77636 -22.94321 -21.87338 -21.12049 -19.20667 -18.72148 -18.29664 -17.67742 -17.48540 -17.04703 -16.73866 -16.58635 -16.47253 -15.58849 -15.07429 -14.93769 -14.49321 -14.38748 -14.23958 -13.90633 -13.59506 -13.36667 -13.14908 -12.97270 -12.62494 -12.58964 -12.55636 -12.02818 -11.94608 -11.66845 -11.59053 -11.53266 -11.47920 -11.31796 -10.61878 -10.06891 -9.47706 -8.27912 -6.41516 0.04377 0.27576 1.05239 1.40482 1.44367 1.51937 1.68324 2.38562 2.44048 2.92153 3.06410 3.28234 3.46775 3.56091 3.69985 3.79834 3.93923 4.01304 4.16061 4.20652 4.24377 4.30739 4.47766 4.65590 4.68530 4.89791 4.94746 5.00358 5.08128 5.17557 5.25107 5.27998 5.44798 5.52565 5.55297 5.73053 5.90443 6.05068 6.69542 6.74065 7.28390 8.84558 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040686 B = 0.002503 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.027884 B =11182.660239 C =11278.933108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.363 6.363 12 C 0.482 3.518 13 O -0.543 6.543 14 C -0.167 4.167 15 H 0.151 0.849 16 C -0.120 4.120 17 C -0.076 4.076 18 H 0.121 0.879 19 C -0.070 4.070 20 C -0.087 4.087 21 C -0.155 4.155 22 C 0.076 3.924 23 F -0.150 7.150 24 C -0.151 4.151 25 C -0.086 4.086 26 H 0.268 0.732 27 H 0.007 0.993 28 H 0.006 0.994 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 -24.721 0.484 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.279 6.279 12 C 0.327 3.673 13 O -0.434 6.434 14 C -0.186 4.186 15 H 0.169 0.831 16 C -0.156 4.156 17 C -0.094 4.094 18 H 0.139 0.861 19 C -0.070 4.070 20 C -0.104 4.104 21 C -0.174 4.174 22 C 0.057 3.943 23 F -0.129 7.129 24 C -0.170 4.170 25 C -0.104 4.104 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.172 0.828 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.929 -24.585 0.511 24.666 hybrid contribution 0.333 0.968 0.395 1.097 sum 2.262 -23.617 0.906 23.742 Atomic orbital electron populations 1.70085 1.07837 1.28398 1.50272 1.25973 0.95847 1.03437 0.94019 0.85374 0.78200 0.77391 0.79340 1.18983 1.20441 1.19064 1.21349 0.93708 0.91245 1.52692 0.91674 1.18976 0.94339 0.90618 0.96694 1.23175 0.95059 0.79081 1.00973 1.86505 1.42627 1.15802 1.82948 1.23343 0.85822 0.86902 0.71226 1.90606 1.16846 1.88489 1.47433 1.21974 1.03212 0.84525 1.08843 0.83086 1.23456 1.03539 0.98686 0.89948 1.21105 0.98617 0.89931 0.99776 0.86147 1.19182 0.95666 0.95619 0.96556 1.21069 1.00469 0.94917 0.93994 1.21321 0.95895 0.97677 1.02510 1.18039 0.95481 0.86602 0.94227 1.91477 1.89615 1.53105 1.78654 1.21377 1.01560 0.98322 0.95716 1.21216 0.95153 0.94322 0.99688 0.92279 0.97443 0.97597 0.92306 0.92090 0.87468 0.83489 0.83889 0.83350 0.82775 0.82249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.67 5.35 29.85 0.16 1.83 16 10 C 0.09 4.09 5.40 71.98 0.39 4.48 16 11 O -0.36 -14.61 10.22 -51.39 -0.53 -15.14 16 12 C 0.48 16.32 7.74 71.24 0.55 16.87 16 13 O -0.54 -20.86 16.01 21.95 0.35 -20.51 16 14 C -0.17 -3.74 5.93 -11.54 -0.07 -3.80 16 15 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 16 C -0.12 -1.86 9.56 30.61 0.29 -1.57 16 17 C -0.08 -1.38 5.56 -11.52 -0.06 -1.44 16 18 H 0.12 2.47 7.67 -2.39 -0.02 2.45 16 19 C -0.07 -1.11 5.61 -19.86 -0.11 -1.23 16 20 C -0.09 -1.37 9.73 22.26 0.22 -1.15 16 21 C -0.16 -2.43 10.03 22.32 0.22 -2.20 16 22 C 0.08 1.28 7.30 22.38 0.16 1.44 16 23 F -0.15 -2.84 17.27 44.97 0.78 -2.07 16 24 C -0.15 -2.10 10.03 22.31 0.22 -1.87 16 25 C -0.09 -1.12 9.30 22.26 0.21 -0.91 16 26 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 30 H 0.06 2.71 8.13 -2.39 -0.02 2.69 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.15 1.28 6.17 -2.39 -0.01 1.27 16 33 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.16 1.25 6.02 -2.91 -0.02 1.23 16 Total: -1.00 -68.39 322.67 6.88 -61.51 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.09 Total: 5.84 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 2.88 Total: -19.89 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.17 Total: -35.65 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.39 6.88 -61.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806274093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.047 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds