Wall clock time and date at job start Mon Mar 30 2020 23:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.34233 * 117.00244 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99569 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99946 * 179.97438 * 12 11 10 15 15 H 1.09002 * 115.54892 * 325.58093 * 14 12 11 16 16 C 1.52996 * 117.49466 * 111.25525 * 14 12 11 17 17 C 1.53004 * 117.49469 * 179.91562 * 14 12 11 18 18 H 1.08998 * 117.49859 * 145.01950 * 17 14 12 19 19 C 1.50702 * 117.49749 * 0.02562 * 17 14 12 20 20 C 1.38247 * 119.97199 * 299.72068 * 19 17 14 21 21 C 1.38203 * 120.01972 * 179.76935 * 20 19 17 22 22 C 1.38457 * 119.97287 * 0.51318 * 21 20 19 23 23 F 1.35111 * 120.02201 * 179.76702 * 22 21 20 24 24 C 1.38454 * 119.95395 * 359.74329 * 22 21 20 25 25 C 1.38195 * 119.97101 * 0.02562 * 24 22 21 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 1.09002 * 117.49776 * 214.97561 * 16 14 12 32 32 H 1.08996 * 117.50299 * 359.97438 * 16 14 12 33 33 H 1.07999 * 119.98928 * 0.02562 * 20 19 17 34 34 H 1.08001 * 120.00956 * 180.25237 * 21 20 19 35 35 H 1.07997 * 120.01622 * 179.97438 * 24 22 21 36 36 H 1.07997 * 119.98724 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2505 -6.0453 0.0004 13 8 3.4570 -5.9820 0.0017 14 6 1.5663 -7.3880 0.0004 15 1 0.6298 -7.4385 0.5559 16 6 1.6844 -8.2409 -1.2643 17 6 2.4548 -8.6336 -0.0011 18 1 2.1027 -9.5036 0.5531 19 6 3.9472 -8.4237 -0.0018 20 6 4.5478 -7.7388 -1.0417 21 6 5.9157 -7.5416 -1.0410 22 6 6.6858 -8.0395 -0.0037 23 9 8.0237 -7.8514 -0.0044 24 6 6.0838 -8.7299 1.0346 25 6 4.7152 -8.9217 1.0341 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 0.8257 -8.8529 -1.5406 32 1 2.2566 -7.8308 -2.0964 33 1 3.9473 -7.3541 -1.8528 34 1 6.3842 -7.0030 -1.8514 35 1 6.6836 -9.1191 1.8440 36 1 4.2454 -9.4606 1.8436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806274094.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:07 Heat of formation + Delta-G solvation = -86.885681 kcal Electronic energy + Delta-G solvation = -20735.742989 eV Core-core repulsion = 17293.178035 eV Total energy + Delta-G solvation = -3442.564955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.87174 -40.75667 -39.05363 -36.99338 -35.74571 -33.70684 -31.16617 -30.44342 -29.95307 -25.68082 -24.04334 -23.89095 -22.91813 -21.42793 -20.95276 -19.92963 -18.08937 -17.52453 -16.71512 -16.36984 -16.15383 -16.00163 -15.55959 -15.03575 -14.93256 -14.29346 -13.75971 -13.63245 -13.41656 -13.21887 -13.12495 -12.82404 -12.36906 -11.86264 -11.75182 -11.67570 -11.36676 -11.09863 -10.82300 -10.75790 -10.69671 -10.27244 -10.17036 -9.94022 -9.78879 -8.96187 -8.76840 -8.42551 -8.28463 -6.47817 -4.18818 1.07430 1.28813 2.32255 2.97847 3.39699 3.41474 3.42559 3.61454 3.80035 4.25632 4.28982 4.47097 4.51753 4.61321 4.66541 4.86928 4.91920 5.12354 5.19859 5.30979 5.36917 5.41870 5.58930 5.70275 5.86519 5.94369 5.96098 5.98208 6.12428 6.23652 6.46393 6.47612 6.84818 6.89280 7.27619 7.30870 7.98739 8.15939 8.32701 8.74647 9.53805 10.93628 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.003831 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.175291 B = 7307.854798 C = 8400.606055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 1.073 2.927 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.608 4.608 8 H 0.052 0.948 9 C 0.012 3.988 10 C 0.084 3.916 11 O -0.357 6.357 12 C 0.478 3.522 13 O -0.499 6.499 14 C -0.155 4.155 15 H 0.139 0.861 16 C -0.145 4.145 17 C -0.083 4.083 18 H 0.128 0.872 19 C -0.061 4.061 20 C -0.028 4.028 21 C -0.157 4.157 22 C 0.096 3.904 23 F -0.145 7.145 24 C -0.163 4.163 25 C -0.083 4.083 26 H 0.270 0.730 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.059 -21.309 -0.890 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.900 3.100 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.646 4.646 8 H 0.071 0.929 9 C -0.025 4.025 10 C 0.012 3.988 11 O -0.273 6.273 12 C 0.321 3.679 13 O -0.388 6.388 14 C -0.174 4.174 15 H 0.157 0.843 16 C -0.181 4.181 17 C -0.101 4.101 18 H 0.146 0.854 19 C -0.062 4.062 20 C -0.046 4.046 21 C -0.175 4.175 22 C 0.077 3.923 23 F -0.124 7.124 24 C -0.182 4.182 25 C -0.101 4.101 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.268 -19.569 -0.889 20.568 hybrid contribution 0.516 -1.399 0.128 1.497 sum 6.784 -20.969 -0.760 22.052 Atomic orbital electron populations 1.70780 1.06868 1.30807 1.45754 1.25896 0.96478 1.02720 0.93361 0.83490 0.74855 0.74949 0.76697 1.20571 1.21267 1.21277 1.21823 0.94453 0.91134 1.57162 0.92918 1.19296 0.94863 0.90827 0.97548 1.23441 0.95916 0.78366 1.01112 1.86496 1.42569 1.15746 1.82478 1.22477 0.86056 0.86275 0.73079 1.90705 1.15126 1.87621 1.45353 1.21882 1.02360 0.87399 1.05778 0.84336 1.23229 1.02815 1.00869 0.91218 1.21166 0.90027 0.96916 1.01948 0.85396 1.18900 0.92776 0.99206 0.95277 1.20630 0.93198 0.93460 0.97359 1.20982 0.94405 1.02954 0.99206 1.17692 0.77065 1.00606 0.96917 1.91477 1.30649 1.93651 1.96615 1.20949 0.95679 1.02675 0.98868 1.20645 0.92533 0.99293 0.97600 0.91911 0.96277 0.96282 0.92211 0.92159 0.86609 0.87656 0.85958 0.85173 0.85150 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.61 13.65 55.43 0.76 -26.86 16 2 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 3 Si 1.07 25.15 29.90 -169.99 -5.08 20.06 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.61 -17.40 9.11 -34.44 -0.31 -17.72 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.01 0.31 4.66 -27.88 -0.13 0.18 16 10 C 0.08 1.88 5.40 37.16 0.20 2.08 16 11 O -0.36 -7.02 10.22 -39.27 -0.40 -7.42 16 12 C 0.48 7.92 7.61 36.01 0.27 8.19 16 13 O -0.50 -9.09 11.49 -18.75 -0.22 -9.31 16 14 C -0.16 -1.77 6.30 -91.77 -0.58 -2.34 16 15 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.14 -1.25 9.58 -26.69 -0.26 -1.51 16 17 C -0.08 -0.77 6.04 -91.73 -0.55 -1.33 16 18 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.06 -0.72 4.35 -104.62 -0.46 -1.18 16 20 C -0.03 -0.37 6.20 -39.59 -0.25 -0.61 16 21 C -0.16 -2.08 10.03 -39.51 -0.40 -2.48 16 22 C 0.10 1.29 7.30 -39.42 -0.29 1.00 16 23 F -0.15 -2.01 17.27 2.25 0.04 -1.97 16 24 C -0.16 -1.92 10.03 -39.52 -0.40 -2.31 16 25 C -0.08 -0.91 9.73 -39.60 -0.39 -1.29 16 26 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 27 H 0.02 0.51 8.01 -51.93 -0.42 0.10 16 28 H 0.02 0.51 8.01 -51.93 -0.42 0.10 16 29 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 31 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.11 0.97 6.18 -51.93 -0.32 0.65 16 33 H 0.12 1.50 5.80 -52.49 -0.30 1.19 16 34 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -32.57 313.48 -8.14 -40.70 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.34 Total: -1.10 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.62 Total: -18.83 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.76 Total: -26.86 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.62 Total: -16.73 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.57 -8.14 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806274094.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.182 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds