Wall clock time and date at job start Mon Mar 30 2020 23:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.34233 * 117.00244 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99569 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99946 * 179.97438 * 12 11 10 15 15 H 1.09002 * 115.54892 * 325.58093 * 14 12 11 16 16 C 1.52996 * 117.49466 * 111.25525 * 14 12 11 17 17 C 1.53004 * 117.49469 * 179.91562 * 14 12 11 18 18 H 1.08998 * 117.49859 * 145.01950 * 17 14 12 19 19 C 1.50702 * 117.49749 * 0.02562 * 17 14 12 20 20 C 1.38247 * 119.97199 * 299.72068 * 19 17 14 21 21 C 1.38203 * 120.01972 * 179.76935 * 20 19 17 22 22 C 1.38457 * 119.97287 * 0.51318 * 21 20 19 23 23 F 1.35111 * 120.02201 * 179.76702 * 22 21 20 24 24 C 1.38454 * 119.95395 * 359.74329 * 22 21 20 25 25 C 1.38195 * 119.97101 * 0.02562 * 24 22 21 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 1.09002 * 117.49776 * 214.97561 * 16 14 12 32 32 H 1.08996 * 117.50299 * 359.97438 * 16 14 12 33 33 H 1.07999 * 119.98928 * 0.02562 * 20 19 17 34 34 H 1.08001 * 120.00956 * 180.25237 * 21 20 19 35 35 H 1.07997 * 120.01622 * 179.97438 * 24 22 21 36 36 H 1.07997 * 119.98724 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2505 -6.0453 0.0004 13 8 3.4570 -5.9820 0.0017 14 6 1.5663 -7.3880 0.0004 15 1 0.6298 -7.4385 0.5559 16 6 1.6844 -8.2409 -1.2643 17 6 2.4548 -8.6336 -0.0011 18 1 2.1027 -9.5036 0.5531 19 6 3.9472 -8.4237 -0.0018 20 6 4.5478 -7.7388 -1.0417 21 6 5.9157 -7.5416 -1.0410 22 6 6.6858 -8.0395 -0.0037 23 9 8.0237 -7.8514 -0.0044 24 6 6.0838 -8.7299 1.0346 25 6 4.7152 -8.9217 1.0341 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 0.8257 -8.8529 -1.5406 32 1 2.2566 -7.8308 -2.0964 33 1 3.9473 -7.3541 -1.8528 34 1 6.3842 -7.0030 -1.8514 35 1 6.6836 -9.1191 1.8440 36 1 4.2454 -9.4606 1.8436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806274094.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:07 Heat of formation + Delta-G solvation = -103.874891 kcal Electronic energy + Delta-G solvation = -20736.479697 eV Core-core repulsion = 17293.178035 eV Total energy + Delta-G solvation = -3443.301662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.90576 -41.92852 -40.18039 -38.12607 -37.00322 -35.83731 -32.20647 -32.07667 -31.13566 -27.26303 -25.60307 -24.85964 -23.84806 -23.29636 -21.97420 -21.05723 -19.30693 -18.82369 -18.51026 -17.70403 -17.49850 -17.16608 -16.59930 -16.10023 -15.84295 -15.65880 -15.46909 -15.07411 -14.76724 -14.47069 -14.16578 -13.96665 -13.67482 -13.63376 -13.24708 -13.04497 -12.53613 -12.47505 -12.17805 -11.95812 -11.90698 -11.66547 -11.60376 -11.52301 -11.39004 -10.89561 -10.62447 -9.91020 -9.25399 -8.79616 -6.52171 0.12339 0.35944 1.10687 1.51365 1.60016 1.67570 1.80505 2.47941 2.53232 2.97046 3.07232 3.32013 3.43536 3.70636 3.72377 3.82380 3.88836 3.97457 4.04598 4.09582 4.26003 4.33151 4.50960 4.51938 4.76557 4.82979 4.98617 4.98901 5.02080 5.11029 5.16847 5.20423 5.31810 5.53636 5.59049 5.79720 5.97758 6.04289 6.43016 6.74566 7.30024 8.62410 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.003831 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.175291 B = 7307.854798 C = 8400.606055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.030 4.030 3 Si 1.121 2.879 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.627 4.627 8 H 0.054 0.946 9 C 0.015 3.985 10 C 0.102 3.898 11 O -0.368 6.368 12 C 0.469 3.531 13 O -0.519 6.519 14 C -0.171 4.171 15 H 0.162 0.838 16 C -0.128 4.128 17 C -0.071 4.071 18 H 0.169 0.831 19 C -0.071 4.071 20 C -0.044 4.044 21 C -0.176 4.176 22 C 0.071 3.929 23 F -0.154 7.154 24 C -0.166 4.166 25 C -0.082 4.082 26 H 0.258 0.742 27 H 0.003 0.997 28 H 0.004 0.996 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.153 0.847 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.840 -22.925 -0.334 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.228 4.228 3 Si 0.941 3.059 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.665 4.665 8 H 0.072 0.928 9 C -0.022 4.022 10 C 0.029 3.971 11 O -0.285 6.285 12 C 0.314 3.686 13 O -0.409 6.409 14 C -0.190 4.190 15 H 0.179 0.821 16 C -0.165 4.165 17 C -0.088 4.088 18 H 0.186 0.814 19 C -0.071 4.071 20 C -0.062 4.062 21 C -0.195 4.195 22 C 0.052 3.948 23 F -0.133 7.133 24 C -0.184 4.184 25 C -0.100 4.100 26 H 0.068 0.932 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.171 0.829 32 H 0.113 0.887 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.056 -21.230 -0.338 22.079 hybrid contribution 0.596 -1.006 -0.059 1.171 sum 6.652 -22.236 -0.397 23.213 Atomic orbital electron populations 1.70907 1.07868 1.30137 1.47588 1.27499 0.96536 1.06697 0.92084 0.82891 0.74124 0.70729 0.78148 1.20374 1.19359 1.19302 1.22219 0.94818 0.92484 1.56949 0.92793 1.19143 0.95056 0.92064 0.95944 1.22861 0.94512 0.79167 1.00607 1.86491 1.42889 1.15772 1.83314 1.23625 0.86180 0.86873 0.71875 1.90711 1.16164 1.87830 1.46166 1.22036 1.03521 0.84519 1.08881 0.82062 1.23453 1.03577 0.99365 0.90094 1.21426 0.88120 0.96617 1.02656 0.81377 1.19285 0.94513 0.98463 0.94866 1.20770 0.93021 0.94201 0.98216 1.21141 0.95074 1.03628 0.99645 1.17980 0.76886 1.01974 0.97945 1.91445 1.31233 1.93880 1.96733 1.21292 0.96542 1.01880 0.98704 1.21075 0.92148 0.98691 0.98047 0.93233 0.97861 0.97764 0.92512 0.92744 0.82940 0.88679 0.86120 0.85275 0.83127 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.65 21.45 0.29 -57.08 16 2 C -0.03 -1.72 5.46 84.65 0.46 -1.26 16 3 Si 1.12 50.01 29.90 68.60 2.05 52.06 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.63 -36.40 9.11 25.60 0.23 -36.17 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.02 0.81 4.66 29.85 0.14 0.95 16 10 C 0.10 4.66 5.40 71.98 0.39 5.05 16 11 O -0.37 -14.53 10.22 -51.44 -0.53 -15.06 16 12 C 0.47 15.19 7.61 71.24 0.54 15.73 16 13 O -0.52 -18.84 11.49 21.98 0.25 -18.59 16 14 C -0.17 -3.40 6.30 -11.54 -0.07 -3.47 16 15 H 0.16 2.49 8.14 -2.39 -0.02 2.47 16 16 C -0.13 -1.78 9.58 30.62 0.29 -1.49 16 17 C -0.07 -1.05 6.04 -11.51 -0.07 -1.12 16 18 H 0.17 1.20 8.14 -2.39 -0.02 1.18 16 19 C -0.07 -1.52 4.35 -19.86 -0.09 -1.60 16 20 C -0.04 -1.12 6.20 22.26 0.14 -0.98 16 21 C -0.18 -4.80 10.03 22.31 0.22 -4.58 16 22 C 0.07 1.92 7.30 22.37 0.16 2.08 16 23 F -0.15 -4.36 17.27 44.97 0.78 -3.58 16 24 C -0.17 -3.65 10.03 22.31 0.22 -3.43 16 25 C -0.08 -1.58 9.73 22.26 0.22 -1.36 16 26 H 0.26 16.11 7.22 -92.71 -0.67 15.44 16 27 H 0.00 0.17 8.01 -2.39 -0.02 0.15 16 28 H 0.00 0.23 8.01 -2.38 -0.02 0.21 16 29 H 0.06 2.59 8.13 -2.39 -0.02 2.57 16 30 H 0.05 2.52 8.13 -2.39 -0.02 2.50 16 31 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.56 6.18 -2.39 -0.01 1.54 16 33 H 0.12 2.98 5.80 -2.91 -0.02 2.96 16 34 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -72.25 313.48 6.83 -65.41 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.19 Total: 8.49 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 2.80 Total: -31.65 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.29 Total: -57.08 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.27 Total: -33.65 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.06 kcal Total: -72.25 6.83 -65.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806274094.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.463 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds