Wall clock time and date at job start Tue Mar 31 2020 00:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99755 * 2 1 4 4 H 1.48504 * 109.46550 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47531 * 299.99980 * 3 2 1 6 6 H 1.48501 * 109.47040 * 60.00465 * 3 2 1 7 7 C 1.37868 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00407 * 174.00615 * 7 2 1 9 9 C 1.50710 * 120.00284 * 354.00241 * 7 2 1 10 10 O 1.45196 * 112.84615 * 66.09412 * 9 7 2 11 11 C 1.34768 * 116.99684 * 54.09083 * 10 9 7 12 12 O 1.21534 * 120.00257 * 5.33853 * 11 10 9 13 13 C 1.47248 * 120.00064 * 185.33478 * 11 10 9 14 14 C 1.38295 * 126.46970 * 359.68788 * 13 11 10 15 15 N 1.34225 * 108.38711 * 179.86638 * 14 13 11 16 16 H 0.96995 * 125.38190 * 180.18892 * 15 14 13 17 17 C 1.37799 * 109.23119 * 0.40419 * 15 14 13 18 18 C 1.46822 * 125.83771 * 179.73012 * 17 15 14 19 19 N 1.34779 * 119.99587 * 0.02562 * 18 17 15 20 20 O 1.21667 * 120.00294 * 180.02562 * 18 17 15 21 21 C 1.36329 * 108.32248 * 359.75053 * 17 15 14 22 22 C 1.53779 * 113.60967 * 294.90652 * 9 7 2 23 23 C 1.53786 * 87.07933 * 219.92944 * 22 9 7 24 24 C 1.53791 * 87.17049 * 25.39307 * 23 22 9 25 25 H 0.97007 * 119.99978 * 5.02583 * 1 2 3 26 26 H 1.08000 * 125.80516 * 359.97438 * 14 13 11 27 27 H 0.96998 * 120.00581 * 0.02562 * 19 18 17 28 28 H 0.97008 * 119.99370 * 179.97438 * 19 18 17 29 29 H 1.07993 * 126.49756 * 179.97438 * 21 17 15 30 30 H 1.08996 * 113.61910 * 105.38632 * 22 9 7 31 31 H 1.09004 * 113.62030 * 334.47539 * 22 9 7 32 32 H 1.09003 * 113.61830 * 139.97583 * 23 22 9 33 33 H 1.08994 * 113.61563 * 270.80590 * 23 22 9 34 34 H 1.08994 * 113.61380 * 89.15507 * 24 23 22 35 35 H 1.08996 * 113.61199 * 220.06271 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0801 -1.1966 -0.0982 9 6 1.2572 -2.4957 0.1353 10 8 0.3987 -2.7741 -1.0021 11 6 0.9727 -2.7544 -2.2212 12 8 2.1747 -2.6077 -2.3247 13 6 0.1437 -2.9108 -3.4280 14 6 -1.2270 -3.0911 -3.4660 15 7 -1.6057 -3.1889 -4.7500 16 1 -2.5163 -3.3167 -5.0588 17 6 -0.4958 -3.0838 -5.5599 18 6 -0.4928 -3.1472 -7.0268 19 7 -1.6496 -3.3221 -7.6960 20 8 0.5538 -3.0420 -7.6382 21 6 0.5991 -2.9112 -4.7662 22 6 0.5549 -2.6640 1.4929 23 6 0.9983 -4.1359 1.4510 24 6 2.1498 -3.6838 0.5374 25 1 -0.4850 0.8369 -0.0736 26 1 -1.8815 -3.1426 -2.6085 27 1 -2.4841 -3.4056 -7.2086 28 1 -1.6477 -3.3636 -8.6651 29 1 1.6207 -2.7970 -5.0971 30 1 -0.5259 -2.5321 1.4448 31 1 1.0168 -2.0916 2.2975 32 1 1.3311 -4.5194 2.4156 33 1 0.2824 -4.7937 0.9582 34 1 3.0484 -3.3907 1.0802 35 1 2.3545 -4.3740 -0.2810 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:05 Heat of formation + Delta-G solvation = -53.861785 kcal Electronic energy + Delta-G solvation = -21552.308957 eV Core-core repulsion = 18131.095987 eV Total energy + Delta-G solvation = -3421.212969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.35734 -39.11933 -38.72552 -36.70352 -33.95250 -33.86370 -32.28069 -31.11279 -29.39960 -26.43356 -24.50796 -23.81011 -22.93683 -22.08281 -20.19231 -19.52303 -18.82708 -18.01563 -17.04098 -16.77530 -15.77000 -15.24832 -15.15702 -14.84183 -14.68077 -14.24119 -13.84485 -13.83439 -13.44014 -13.27557 -12.98007 -12.19620 -11.96081 -11.46410 -11.24973 -11.11686 -10.86973 -10.38663 -10.37213 -9.99778 -9.97960 -9.92641 -9.86918 -9.23248 -8.90958 -8.73252 -8.44171 -8.31103 -8.18320 -6.03621 -4.11660 1.47798 2.25249 2.98568 3.26740 3.30860 3.31786 3.39350 3.46437 4.06420 4.39399 4.46327 4.83222 5.16183 5.28224 5.37432 5.62552 5.75791 5.86063 5.94159 6.14411 6.33411 6.47364 6.48538 6.52565 6.69382 6.84219 6.86878 6.89272 7.10343 7.21594 7.30727 7.32996 7.62756 7.88210 7.97503 8.05177 8.43965 8.91583 9.37046 9.57073 11.00913 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.005349 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.241307 B = 5233.713854 C = 5917.550406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.235 3.765 10 O -0.339 6.339 11 C 0.535 3.465 12 O -0.506 6.506 13 C -0.201 4.201 14 C 0.100 3.900 15 N -0.534 5.534 16 H 0.416 0.584 17 C -0.087 4.087 18 C 0.599 3.401 19 N -0.859 5.859 20 O -0.531 6.531 21 C -0.037 4.037 22 C -0.094 4.094 23 C -0.151 4.151 24 C -0.153 4.153 25 H 0.260 0.740 26 H 0.190 0.810 27 H 0.395 0.605 28 H 0.406 0.594 29 H 0.157 0.843 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.631 -7.637 -7.911 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.201 3.799 10 O -0.256 6.256 11 C 0.379 3.621 12 O -0.395 6.395 13 C -0.209 4.209 14 C -0.041 4.041 15 N -0.130 5.130 16 H 0.253 0.747 17 C -0.197 4.197 18 C 0.386 3.614 19 N -0.423 5.423 20 O -0.407 6.407 21 C -0.063 4.063 22 C -0.132 4.132 23 C -0.189 4.189 24 C -0.191 4.191 25 H 0.070 0.930 26 H 0.207 0.793 27 H 0.222 0.778 28 H 0.237 0.763 29 H 0.175 0.825 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.745 -7.424 -8.171 14.084 hybrid contribution -0.504 0.971 -0.353 1.150 sum -9.249 -6.453 -8.523 14.136 Atomic orbital electron populations 1.70023 1.05804 1.26703 1.48061 1.25038 0.94850 0.99191 0.93914 0.86565 0.80684 0.83568 0.77483 1.19445 1.21004 1.20893 1.21242 0.93912 0.89338 1.50772 0.91468 1.20626 0.86394 0.91904 0.80964 1.86384 1.44847 1.79886 1.14463 1.19591 0.85786 0.73679 0.83091 1.90741 1.15735 1.45297 1.87694 1.19326 0.92657 1.16147 0.92769 1.22731 0.96166 0.99073 0.86120 1.41654 1.08869 1.56150 1.06355 0.74721 1.19793 0.87572 1.22049 0.90263 1.17037 0.83746 0.75390 0.85270 1.43697 1.09132 1.78117 1.11337 1.90890 1.31225 1.50236 1.68361 1.21134 0.98387 0.96530 0.90293 1.22721 1.00505 0.92841 0.97137 1.22987 0.99028 0.98077 0.98801 1.23467 0.97599 0.99326 0.98667 0.93043 0.79270 0.77791 0.76295 0.82508 0.91952 0.90040 0.93058 0.91378 0.90193 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.23 12.80 55.43 0.71 -23.52 16 2 C 0.07 2.07 5.36 -17.82 -0.10 1.98 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.43 6.82 -34.44 -0.24 -14.67 16 8 H 0.07 1.96 7.82 -52.49 -0.41 1.55 16 9 C 0.24 5.91 0.35 -90.87 -0.03 5.88 16 10 O -0.34 -8.35 9.72 -40.68 -0.40 -8.75 16 11 C 0.54 12.90 7.50 34.39 0.26 13.16 16 12 O -0.51 -13.67 15.36 -19.29 -0.30 -13.97 16 13 C -0.20 -3.87 6.13 -105.03 -0.64 -4.52 16 14 C 0.10 1.42 11.76 -16.48 -0.19 1.22 16 15 N -0.53 -5.69 5.91 -9.29 -0.05 -5.75 16 16 H 0.42 2.38 8.13 -40.82 -0.33 2.04 16 17 C -0.09 -1.22 6.99 -82.40 -0.58 -1.80 16 18 C 0.60 7.86 8.06 -12.79 -0.10 7.75 16 19 N -0.86 -6.42 8.87 30.29 0.27 -6.15 16 20 O -0.53 -9.23 17.69 5.22 0.09 -9.14 16 21 C -0.04 -0.67 10.37 -39.09 -0.41 -1.07 16 22 C -0.09 -2.12 7.02 -25.92 -0.18 -2.30 16 23 C -0.15 -2.92 8.02 -25.91 -0.21 -3.13 16 24 C -0.15 -3.38 7.10 -25.82 -0.18 -3.57 16 25 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 26 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 27 H 0.39 1.63 7.91 -40.82 -0.32 1.30 16 28 H 0.41 2.46 8.93 -40.82 -0.36 2.09 16 29 H 0.16 2.94 8.06 -52.49 -0.42 2.51 16 30 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.83 8.09 -51.93 -0.42 1.41 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 35 H 0.05 1.13 8.07 -51.93 -0.42 0.71 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -35.84 312.62 -6.53 -42.37 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.94 Total: 4.49 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.60 Total: -1.05 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.92 Total: -35.42 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.60 Total: -31.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.84 -6.53 -42.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.491 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds