Wall clock time and date at job start Tue Mar 31 2020 00:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00151 * 2 1 4 4 H 1.48501 * 109.46771 * 270.00226 * 3 2 1 5 5 H 1.48503 * 109.47017 * 29.99951 * 3 2 1 6 6 H 1.48495 * 109.47218 * 149.99900 * 3 2 1 7 7 C 1.37879 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46926 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47105 * 179.97438 * 10 9 7 12 12 O 1.20824 * 120.00056 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99858 * 179.97438 * 11 10 9 14 14 C 1.45206 * 116.99600 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46769 * 180.02562 * 14 13 11 16 16 N 1.31690 * 119.71664 * 263.05394 * 15 14 13 17 17 C 1.31926 * 121.87966 * 179.72552 * 16 15 14 18 18 C 1.38349 * 121.08213 * 0.59067 * 17 16 15 19 19 C 1.38357 * 119.29940 * 359.42117 * 18 17 16 20 20 C 1.39526 * 119.71822 * 83.07324 * 15 14 13 21 21 C 1.47840 * 120.55568 * 359.95930 * 20 15 14 22 22 N 1.34779 * 119.99605 * 173.93944 * 21 20 15 23 23 O 1.21549 * 120.00370 * 353.94180 * 21 20 15 24 24 H 0.96999 * 120.00074 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47291 * 59.99867 * 9 7 2 26 26 H 1.09000 * 109.47120 * 299.99403 * 9 7 2 27 27 H 1.08997 * 109.46982 * 59.99511 * 10 9 7 28 28 H 1.09000 * 109.46937 * 299.99765 * 10 9 7 29 29 H 1.08990 * 109.47272 * 60.00628 * 14 13 11 30 30 H 1.08997 * 109.46935 * 299.99846 * 14 13 11 31 31 H 1.08003 * 119.46491 * 180.31556 * 17 16 15 32 32 H 1.07998 * 120.35555 * 179.69974 * 18 17 16 33 33 H 1.08007 * 120.85613 * 180.29928 * 19 18 17 34 34 H 0.97000 * 120.00606 * 0.02562 * 22 21 20 35 35 H 0.97006 * 120.00000 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2836 -4.9672 0.0011 13 8 2.1630 -6.1296 0.0008 14 6 1.3721 -7.3474 0.0008 15 6 2.2901 -8.5425 0.0010 16 7 2.5781 -9.1445 -1.1343 17 6 3.3806 -10.1904 -1.1842 18 6 3.9486 -10.7104 -0.0349 19 6 3.6778 -10.1140 1.1838 20 6 2.8273 -9.0019 1.2039 21 6 2.5042 -8.3256 2.4782 22 7 2.9286 -8.8491 3.6454 23 8 1.8558 -7.2975 2.4733 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 0.7431 -7.3721 -0.8889 30 1 0.7436 -7.3723 0.8910 31 1 3.5943 -10.6511 -2.1375 32 1 4.6002 -11.5701 -0.0888 33 1 4.1116 -10.4962 2.0961 34 1 3.4463 -9.6693 3.6494 35 1 2.7163 -8.4055 4.4816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813088018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:49 Heat of formation + Delta-G solvation = -90.486572 kcal Electronic energy + Delta-G solvation = -20749.500211 eV Core-core repulsion = 17326.699072 eV Total energy + Delta-G solvation = -3422.801139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12971 -39.55988 -39.02182 -35.99697 -34.38992 -33.46202 -32.75145 -32.29846 -30.98843 -27.61817 -25.68506 -25.00742 -22.76057 -21.81441 -21.31841 -19.63744 -18.44497 -17.51132 -17.18263 -16.92937 -16.29790 -16.02743 -15.64119 -15.23879 -15.16149 -14.90878 -14.39260 -13.92957 -13.76083 -13.48004 -13.25320 -12.66246 -12.16603 -12.08038 -11.94424 -11.07816 -10.89529 -10.59301 -10.54395 -10.39392 -10.13741 -9.96441 -9.92622 -9.78310 -9.65164 -9.56058 -9.31091 -9.07309 -8.29183 -5.93000 -3.97367 0.22886 0.69111 2.56291 3.06442 3.09608 3.12002 3.37208 3.42782 3.46211 3.65289 4.05737 4.19146 4.31497 4.33497 4.52148 4.62776 4.99168 5.11267 5.29479 5.42063 5.50179 5.59353 5.77019 5.86611 6.13333 6.27447 6.34625 6.47867 6.80692 6.93867 7.14213 7.53021 7.76940 7.86379 7.95211 8.08472 8.38738 8.60934 9.09926 9.65847 11.18122 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.003427 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.382218 B = 8168.239683 C = 8491.088117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.101 4.101 11 C 0.463 3.537 12 O -0.505 6.505 13 O -0.351 6.351 14 C 0.109 3.891 15 C 0.190 3.810 16 N -0.470 5.470 17 C 0.127 3.873 18 C -0.177 4.177 19 C -0.045 4.045 20 C -0.172 4.172 21 C 0.561 3.439 22 N -0.851 5.851 23 O -0.507 6.507 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.166 0.834 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.398 0.602 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 -26.659 4.118 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.138 4.138 11 C 0.307 3.693 12 O -0.392 6.392 13 O -0.268 6.268 14 C 0.034 3.966 15 C 0.051 3.949 16 N -0.179 5.179 17 C -0.031 4.031 18 C -0.197 4.197 19 C -0.071 4.071 20 C -0.178 4.178 21 C 0.345 3.655 22 N -0.416 5.416 23 O -0.382 6.382 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.183 0.817 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.227 0.773 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.974 -25.568 3.159 27.281 hybrid contribution 1.006 0.055 1.120 1.507 sum 9.980 -25.513 4.279 27.728 Atomic orbital electron populations 1.70001 1.06065 1.26632 1.50119 1.25023 0.94849 0.99261 0.95246 0.86548 0.79758 0.83323 0.78069 1.20641 1.21229 1.19832 1.21173 0.93053 0.90704 1.51518 0.92363 1.19018 0.93254 0.89188 0.98942 1.21729 1.00632 0.87675 1.03782 1.24614 0.87925 0.85286 0.71499 1.90614 1.15858 1.87513 1.45187 1.86506 1.41422 1.14126 1.84757 1.21676 0.91137 0.79181 1.04591 1.21078 0.92767 0.94030 0.86979 1.67616 1.13574 1.08603 1.28127 1.23091 0.90349 0.90669 0.98990 1.22162 1.02253 1.02112 0.93160 1.21741 0.93751 0.92581 0.99059 1.20780 1.02560 0.99119 0.95304 1.18013 0.79416 0.84269 0.83782 1.43700 1.58917 1.30307 1.08675 1.90923 1.37823 1.22729 1.86711 0.92919 0.95558 0.95490 0.89123 0.89173 0.90212 0.87351 0.81734 0.83750 0.84135 0.77346 0.75971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.93 13.29 55.43 0.74 -27.19 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.40 9.11 -34.44 -0.31 -15.72 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.93 4.26 -27.88 -0.12 0.81 16 10 C -0.10 -2.29 5.75 -27.88 -0.16 -2.45 16 11 C 0.46 10.48 7.96 36.00 0.29 10.76 16 12 O -0.51 -12.85 15.73 -18.75 -0.29 -13.15 16 13 O -0.35 -6.97 9.64 -44.61 -0.43 -7.40 16 14 C 0.11 1.87 4.70 36.01 0.17 2.04 16 15 C 0.19 2.65 6.46 -82.17 -0.53 2.12 16 16 N -0.47 -5.97 10.26 -9.14 -0.09 -6.06 16 17 C 0.13 1.05 11.17 -17.47 -0.20 0.85 16 18 C -0.18 -1.05 10.10 -39.50 -0.40 -1.45 16 19 C -0.04 -0.30 9.63 -38.87 -0.37 -0.68 16 20 C -0.17 -1.91 5.89 -104.82 -0.62 -2.53 16 21 C 0.56 6.72 7.98 -12.33 -0.10 6.62 16 22 N -0.85 -5.77 8.83 30.53 0.27 -5.50 16 23 O -0.51 -8.65 13.78 -9.33 -0.13 -8.77 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 26 H 0.03 0.82 8.10 -51.93 -0.42 0.40 16 27 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 28 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 29 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 30 H 0.11 1.96 5.87 -51.93 -0.30 1.66 16 31 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 33 H 0.14 0.37 6.57 -52.48 -0.34 0.03 16 34 H 0.40 1.21 6.97 -40.82 -0.28 0.93 16 35 H 0.41 2.47 8.93 -40.82 -0.36 2.10 16 LS Contribution 311.98 15.07 4.70 4.70 Total: -1.00 -38.66 311.98 -6.50 -45.17 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -3.79 Total: -0.92 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.45 Total: 2.02 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.91 Total: -38.75 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.85 Total: -29.33 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -38.66 -6.50 -45.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813088018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.317 kcal (2) G-P(sol) polarization free energy of solvation -38.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds