Wall clock time and date at job start Tue Mar 31 2020 00:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00151 * 2 1 4 4 H 1.48501 * 109.46771 * 270.00226 * 3 2 1 5 5 H 1.48503 * 109.47017 * 29.99951 * 3 2 1 6 6 H 1.48495 * 109.47218 * 149.99900 * 3 2 1 7 7 C 1.37879 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46926 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47105 * 179.97438 * 10 9 7 12 12 O 1.20824 * 120.00056 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99858 * 179.97438 * 11 10 9 14 14 C 1.45206 * 116.99600 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46769 * 180.02562 * 14 13 11 16 16 N 1.31690 * 119.71664 * 263.05394 * 15 14 13 17 17 C 1.31926 * 121.87966 * 179.72552 * 16 15 14 18 18 C 1.38349 * 121.08213 * 0.59067 * 17 16 15 19 19 C 1.38357 * 119.29940 * 359.42117 * 18 17 16 20 20 C 1.39526 * 119.71822 * 83.07324 * 15 14 13 21 21 C 1.47840 * 120.55568 * 359.95930 * 20 15 14 22 22 N 1.34779 * 119.99605 * 173.93944 * 21 20 15 23 23 O 1.21549 * 120.00370 * 353.94180 * 21 20 15 24 24 H 0.96999 * 120.00074 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47291 * 59.99867 * 9 7 2 26 26 H 1.09000 * 109.47120 * 299.99403 * 9 7 2 27 27 H 1.08997 * 109.46982 * 59.99511 * 10 9 7 28 28 H 1.09000 * 109.46937 * 299.99765 * 10 9 7 29 29 H 1.08990 * 109.47272 * 60.00628 * 14 13 11 30 30 H 1.08997 * 109.46935 * 299.99846 * 14 13 11 31 31 H 1.08003 * 119.46491 * 180.31556 * 17 16 15 32 32 H 1.07998 * 120.35555 * 179.69974 * 18 17 16 33 33 H 1.08007 * 120.85613 * 180.29928 * 19 18 17 34 34 H 0.97000 * 120.00606 * 0.02562 * 22 21 20 35 35 H 0.97006 * 120.00000 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2836 -4.9672 0.0011 13 8 2.1630 -6.1296 0.0008 14 6 1.3721 -7.3474 0.0008 15 6 2.2901 -8.5425 0.0010 16 7 2.5781 -9.1445 -1.1343 17 6 3.3806 -10.1904 -1.1842 18 6 3.9486 -10.7104 -0.0349 19 6 3.6778 -10.1140 1.1838 20 6 2.8273 -9.0019 1.2039 21 6 2.5042 -8.3256 2.4782 22 7 2.9286 -8.8491 3.6454 23 8 1.8558 -7.2975 2.4733 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 0.7431 -7.3721 -0.8889 30 1 0.7436 -7.3723 0.8910 31 1 3.5943 -10.6511 -2.1375 32 1 4.6002 -11.5701 -0.0888 33 1 4.1116 -10.4962 2.0961 34 1 3.4463 -9.6693 3.6494 35 1 2.7163 -8.4055 4.4816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813088018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:48 Heat of formation + Delta-G solvation = -120.491755 kcal Electronic energy + Delta-G solvation = -20750.801333 eV Core-core repulsion = 17326.699072 eV Total energy + Delta-G solvation = -3424.102262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.03517 -41.21337 -39.88670 -37.68355 -35.66391 -35.23987 -33.57761 -33.23760 -32.93486 -28.96388 -27.59082 -25.74364 -24.30173 -23.22462 -22.10133 -21.51140 -19.19336 -19.10787 -18.35051 -18.21218 -17.76720 -17.50846 -16.88029 -16.49148 -16.42879 -16.05110 -15.84668 -15.20239 -14.79712 -14.72312 -14.28737 -14.19330 -13.77509 -13.76353 -13.33385 -13.06803 -12.82920 -12.50978 -12.04496 -11.92449 -11.77004 -11.50465 -11.32203 -11.12747 -11.02642 -10.76015 -10.58831 -10.55671 -10.21168 -8.20193 -6.34990 -0.53231 0.03660 1.25300 1.42119 1.45927 1.56873 1.69642 1.82462 2.36376 2.42847 2.78313 3.07704 3.12835 3.47843 3.70286 3.76687 3.98516 4.01909 4.22685 4.28984 4.40443 4.42794 4.46706 4.55699 4.86367 4.90026 5.00180 5.36542 5.44822 5.52062 5.52201 5.78852 5.81200 6.11604 6.33351 6.77166 6.79697 6.84712 7.23408 7.34951 8.92895 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.003427 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.382218 B = 8168.239683 C = 8491.088117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.980 3.020 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.041 3.959 10 C -0.090 4.090 11 C 0.467 3.533 12 O -0.545 6.545 13 O -0.343 6.343 14 C 0.110 3.890 15 C 0.154 3.846 16 N -0.505 5.505 17 C 0.116 3.884 18 C -0.150 4.150 19 C -0.033 4.033 20 C -0.183 4.183 21 C 0.555 3.445 22 N -0.822 5.822 23 O -0.573 6.573 24 H 0.265 0.735 25 H -0.009 1.009 26 H -0.013 1.013 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.197 0.803 32 H 0.196 0.804 33 H 0.190 0.810 34 H 0.419 0.581 35 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.255 -28.934 4.609 32.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.803 3.197 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.583 4.583 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.128 4.128 11 C 0.313 3.687 12 O -0.435 6.435 13 O -0.260 6.260 14 C 0.035 3.965 15 C 0.016 3.984 16 N -0.216 5.216 17 C -0.041 4.041 18 C -0.169 4.169 19 C -0.058 4.058 20 C -0.189 4.189 21 C 0.340 3.660 22 N -0.388 5.388 23 O -0.453 6.453 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.006 0.994 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.213 0.787 32 H 0.213 0.787 33 H 0.207 0.793 34 H 0.252 0.748 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 12.971 -27.926 3.682 31.011 hybrid contribution -0.167 0.505 0.970 1.106 sum 12.804 -27.421 4.652 30.619 Atomic orbital electron populations 1.70177 1.08332 1.28020 1.51063 1.26167 0.95796 1.04034 0.94340 0.85238 0.78571 0.77283 0.78636 1.19493 1.20956 1.17947 1.21620 0.94085 0.91166 1.51470 0.90432 1.18788 0.93592 0.91904 0.95391 1.21504 0.99399 0.85981 1.05879 1.24518 0.87263 0.86328 0.70640 1.90592 1.17507 1.88232 1.47166 1.86452 1.41325 1.14355 1.83819 1.21728 0.92176 0.79478 1.03076 1.20581 0.94889 0.93969 0.88979 1.67468 1.15414 1.10638 1.28056 1.23774 0.89236 0.89451 1.01635 1.22732 1.00520 1.02109 0.91541 1.22287 0.91653 0.90323 1.01583 1.20782 1.03721 1.00797 0.93597 1.18340 0.78768 0.83641 0.85278 1.43468 1.57379 1.30496 1.07409 1.90898 1.40991 1.25737 1.87654 0.92670 0.99077 0.99418 0.87194 0.86594 0.91555 0.89021 0.78655 0.78684 0.79335 0.74767 0.75319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.75 13.29 21.45 0.28 -60.46 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 3 Si 0.98 45.50 29.54 68.60 2.03 47.53 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.55 -32.43 9.11 25.60 0.23 -32.20 16 8 H 0.08 4.21 7.74 -2.91 -0.02 4.19 16 9 C 0.04 2.40 4.26 29.85 0.13 2.53 16 10 C -0.09 -4.23 5.75 29.85 0.17 -4.06 16 11 C 0.47 22.44 7.96 71.23 0.57 23.01 16 12 O -0.55 -30.05 15.73 21.97 0.35 -29.70 16 13 O -0.34 -14.43 9.64 -46.28 -0.45 -14.87 16 14 C 0.11 4.10 4.70 71.24 0.33 4.44 16 15 C 0.15 4.39 6.46 42.89 0.28 4.66 16 16 N -0.51 -12.63 10.26 -182.84 -1.88 -14.51 16 17 C 0.12 1.56 11.17 84.71 0.95 2.51 16 18 C -0.15 -0.98 10.10 22.32 0.23 -0.76 16 19 C -0.03 -0.29 9.63 22.73 0.22 -0.07 16 20 C -0.18 -3.84 5.89 -19.99 -0.12 -3.96 16 21 C 0.55 13.15 7.98 86.78 0.69 13.84 16 22 N -0.82 -9.43 8.83 -175.61 -1.55 -10.98 16 23 O -0.57 -20.71 13.78 10.14 0.14 -20.57 16 24 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 25 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 26 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 27 H 0.11 4.73 8.14 -2.39 -0.02 4.71 16 28 H 0.12 4.82 8.14 -2.39 -0.02 4.80 16 29 H 0.07 2.53 8.13 -2.39 -0.02 2.52 16 30 H 0.09 3.71 5.87 -2.39 -0.01 3.69 16 31 H 0.20 1.21 8.06 -2.91 -0.02 1.18 16 32 H 0.20 -0.61 8.06 -2.91 -0.02 -0.63 16 33 H 0.19 -0.25 6.57 -2.91 -0.02 -0.27 16 34 H 0.42 0.88 6.97 -92.71 -0.65 0.23 16 35 H 0.41 4.36 8.93 -92.70 -0.83 3.53 16 Total: -1.00 -92.48 311.98 2.74 -89.74 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -0.32 Total: 3.77 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 4.14 Total: 10.06 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -3.14 Total: -85.95 kcal Atomic # 8 Polarization: -65.19 SS G_CDS: 0.04 Total: -65.15 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -92.48 2.74 -89.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813088018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.749 kcal (2) G-P(sol) polarization free energy of solvation -92.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds