Wall clock time and date at job start Mon Mar 30 2020 23:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48507 * 109.46771 * 239.99565 * 3 2 1 5 5 H 1.48496 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47291 * 119.99690 * 3 2 1 7 7 C 1.37875 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00281 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47163 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47079 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47052 * 64.99768 * 12 11 10 14 14 C 1.34234 * 116.99674 * 180.02562 * 13 12 11 15 15 O 1.20820 * 120.00012 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99848 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.43513 * 302.54369 * 16 14 13 18 18 C 1.54263 * 110.48777 * 179.97438 * 16 14 13 19 19 C 1.53873 * 106.60043 * 217.71252 * 18 16 14 20 20 C 1.54262 * 106.59789 * 0.02562 * 19 18 16 21 21 F 1.39900 * 110.48492 * 142.29145 * 20 19 18 22 22 F 1.39903 * 110.48727 * 264.79760 * 20 19 18 23 23 C 1.54884 * 104.20018 * 23.61034 * 20 19 18 24 24 H 0.97007 * 119.99648 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46854 * 59.99681 * 9 7 2 26 26 H 1.08997 * 109.47005 * 299.99947 * 9 7 2 27 27 H 1.09004 * 109.47054 * 299.99711 * 11 10 9 28 28 H 1.09000 * 109.47187 * 59.99767 * 11 10 9 29 29 H 1.08997 * 109.47011 * 184.99710 * 12 11 10 30 30 H 1.09005 * 109.46847 * 304.99836 * 12 11 10 31 31 H 1.08996 * 110.03161 * 336.99932 * 18 16 14 32 32 H 1.08998 * 110.02972 * 98.37834 * 18 16 14 33 33 H 1.08998 * 110.02909 * 119.28744 * 19 18 16 34 34 H 1.08997 * 110.03283 * 240.71464 * 19 18 16 35 35 H 1.08996 * 110.75873 * 203.74673 * 23 20 19 36 36 H 1.09005 * 110.75574 * 80.36516 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9563 0.0006 13 8 3.3982 -5.8888 1.2419 14 6 4.3929 -6.7759 1.4017 15 8 4.6283 -7.5824 0.5334 16 6 5.2158 -6.7660 2.6641 17 1 5.6780 -5.7896 2.8094 18 6 6.2910 -7.8711 2.6164 19 6 6.3960 -8.4441 4.0406 20 6 5.3804 -7.6676 4.9039 21 9 4.7714 -8.5211 5.8300 22 9 6.0082 -6.6032 5.5600 23 6 4.3392 -7.1417 3.8850 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.9445 -4.9827 0.8898 28 1 0.9450 -4.9822 -0.8903 29 1 2.1819 -6.9375 -0.0893 30 1 3.3220 -5.7956 -0.8407 31 1 5.9910 -8.6542 1.9201 32 1 7.2482 -7.4478 2.3119 33 1 6.1469 -9.5052 4.0354 34 1 7.4043 -8.2987 4.4282 35 1 3.8253 -6.2636 4.2761 36 1 3.6261 -7.9233 3.6230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815244347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:37 Heat of formation + Delta-G solvation = -250.196957 kcal Electronic energy + Delta-G solvation = -21477.675734 eV Core-core repulsion = 17597.259846 eV Total energy + Delta-G solvation = -3880.415888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.15797 -47.28204 -40.67145 -37.76307 -36.79989 -36.01794 -32.79970 -30.65385 -29.58206 -28.52205 -26.94677 -23.69305 -22.42300 -21.93151 -21.45212 -20.25085 -18.37115 -17.40043 -17.27973 -16.82244 -16.51213 -16.05742 -15.99974 -15.42638 -14.95585 -14.65058 -14.39904 -14.32650 -13.86529 -13.60706 -13.47387 -13.07898 -12.90207 -12.56800 -12.37616 -12.11649 -11.95423 -11.74607 -11.47952 -11.11171 -11.09834 -10.97195 -10.86340 -10.78776 -10.48374 -10.41414 -10.07717 -9.17172 -8.90681 -8.24492 -6.14087 -4.16119 2.08300 2.57841 3.30951 3.33651 3.37470 3.37971 3.45451 3.76845 4.05735 4.29910 4.47010 4.64874 4.70600 4.72516 4.77682 4.87731 4.95911 5.15199 5.22542 5.27871 5.39604 5.42091 5.49842 5.64847 5.74834 5.80897 5.87955 6.02915 6.48869 7.01795 7.36516 7.70282 7.75437 8.09633 8.48762 8.95877 9.48804 10.97405 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.003382 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.089495 B = 8278.154295 C = 8932.057537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.073 3.927 13 O -0.336 6.336 14 C 0.471 3.529 15 O -0.511 6.511 16 C -0.088 4.088 17 H 0.126 0.874 18 C -0.113 4.113 19 C -0.160 4.160 20 C 0.281 3.719 21 F -0.195 7.195 22 F -0.190 7.190 23 C -0.148 4.148 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.859 -17.972 7.393 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.000 4.000 13 O -0.252 6.252 14 C 0.314 3.686 15 O -0.400 6.400 16 C -0.107 4.107 17 H 0.144 0.856 18 C -0.151 4.151 19 C -0.198 4.198 20 C 0.244 3.756 21 F -0.176 7.176 22 F -0.171 7.171 23 C -0.186 4.186 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.931 -18.029 7.147 21.789 hybrid contribution -0.045 0.886 0.036 0.888 sum 9.887 -17.144 7.184 21.053 Atomic orbital electron populations 1.69951 1.06118 1.27351 1.50368 1.24944 0.94987 0.99449 0.95037 0.86380 0.79317 0.81811 0.78890 1.19996 1.21120 1.19944 1.21008 0.94070 0.89303 1.51126 0.91552 1.20235 0.88727 0.83451 0.95523 1.87916 1.35356 1.12609 1.95232 1.22326 0.93218 0.85484 1.00633 1.23265 0.93735 0.98883 0.84113 1.86609 1.43194 1.53763 1.41603 1.23175 0.79126 0.78007 0.88324 1.90639 1.67763 1.38203 1.43385 1.21803 0.95250 1.03380 0.90303 0.85603 1.22142 0.98776 0.98051 0.96093 1.23157 1.00013 1.01468 0.95131 1.21823 0.90829 0.79507 0.83412 1.93017 1.84293 1.70905 1.69406 1.93041 1.83290 1.57572 1.83220 1.23408 0.97240 1.04768 0.93153 0.92541 0.97604 0.97464 0.93157 0.91864 0.90339 0.90362 0.88393 0.89494 0.88148 0.88569 0.87150 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -15.16 9.43 -34.44 -0.32 -15.48 16 8 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 9 C 0.19 5.28 5.69 36.00 0.20 5.48 16 10 O -0.39 -9.33 10.30 -38.80 -0.40 -9.73 16 11 C 0.06 1.08 6.33 37.16 0.24 1.32 16 12 C 0.07 1.11 5.84 37.16 0.22 1.33 16 13 O -0.34 -5.25 10.19 -42.04 -0.43 -5.68 16 14 C 0.47 6.29 7.25 36.00 0.26 6.55 16 15 O -0.51 -7.65 15.17 -18.75 -0.28 -7.93 16 16 C -0.09 -0.87 3.37 -90.10 -0.30 -1.18 16 17 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 18 C -0.11 -0.90 6.18 -25.62 -0.16 -1.05 16 19 C -0.16 -1.10 6.41 -25.62 -0.16 -1.27 16 20 C 0.28 2.57 2.49 -25.08 -0.06 2.51 16 21 F -0.20 -2.03 17.16 2.25 0.04 -2.00 16 22 F -0.19 -2.06 17.17 2.25 0.04 -2.02 16 23 C -0.15 -1.35 5.90 -24.72 -0.15 -1.49 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 31 H 0.10 0.85 6.85 -51.93 -0.36 0.50 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.58 8.11 -51.93 -0.42 0.16 16 34 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.11 0.88 8.05 -51.93 -0.42 0.46 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -32.81 319.01 -5.82 -38.63 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.97 Total: -5.07 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.34 Total: -1.74 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -1.11 Total: -23.35 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.08 Total: -4.02 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.81 -5.82 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815244347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.572 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds