Wall clock time and date at job start Mon Mar 30 2020 23:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48507 * 109.46771 * 239.99565 * 3 2 1 5 5 H 1.48496 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47291 * 119.99690 * 3 2 1 7 7 C 1.37875 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00281 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47163 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47079 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47052 * 64.99768 * 12 11 10 14 14 C 1.34234 * 116.99674 * 180.02562 * 13 12 11 15 15 O 1.20820 * 120.00012 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99848 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.43513 * 302.54369 * 16 14 13 18 18 C 1.54263 * 110.48777 * 179.97438 * 16 14 13 19 19 C 1.53873 * 106.60043 * 217.71252 * 18 16 14 20 20 C 1.54262 * 106.59789 * 0.02562 * 19 18 16 21 21 F 1.39900 * 110.48492 * 142.29145 * 20 19 18 22 22 F 1.39903 * 110.48727 * 264.79760 * 20 19 18 23 23 C 1.54884 * 104.20018 * 23.61034 * 20 19 18 24 24 H 0.97007 * 119.99648 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46854 * 59.99681 * 9 7 2 26 26 H 1.08997 * 109.47005 * 299.99947 * 9 7 2 27 27 H 1.09004 * 109.47054 * 299.99711 * 11 10 9 28 28 H 1.09000 * 109.47187 * 59.99767 * 11 10 9 29 29 H 1.08997 * 109.47011 * 184.99710 * 12 11 10 30 30 H 1.09005 * 109.46847 * 304.99836 * 12 11 10 31 31 H 1.08996 * 110.03161 * 336.99932 * 18 16 14 32 32 H 1.08998 * 110.02972 * 98.37834 * 18 16 14 33 33 H 1.08998 * 110.02909 * 119.28744 * 19 18 16 34 34 H 1.08997 * 110.03283 * 240.71464 * 19 18 16 35 35 H 1.08996 * 110.75873 * 203.74673 * 23 20 19 36 36 H 1.09005 * 110.75574 * 80.36516 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9563 0.0006 13 8 3.3982 -5.8888 1.2419 14 6 4.3929 -6.7759 1.4017 15 8 4.6283 -7.5824 0.5334 16 6 5.2158 -6.7660 2.6641 17 1 5.6780 -5.7896 2.8094 18 6 6.2910 -7.8711 2.6164 19 6 6.3960 -8.4441 4.0406 20 6 5.3804 -7.6676 4.9039 21 9 4.7714 -8.5211 5.8300 22 9 6.0082 -6.6032 5.5600 23 6 4.3392 -7.1417 3.8850 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.9445 -4.9827 0.8898 28 1 0.9450 -4.9822 -0.8903 29 1 2.1819 -6.9375 -0.0893 30 1 3.3220 -5.7956 -0.8407 31 1 5.9910 -8.6542 1.9201 32 1 7.2482 -7.4478 2.3119 33 1 6.1469 -9.5052 4.0354 34 1 7.4043 -8.2987 4.4282 35 1 3.8253 -6.2636 4.2761 36 1 3.6261 -7.9233 3.6230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815244347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:37 Heat of formation + Delta-G solvation = -269.645133 kcal Electronic energy + Delta-G solvation = -21478.519070 eV Core-core repulsion = 17597.259846 eV Total energy + Delta-G solvation = -3881.259224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.92862 -48.06590 -41.75072 -38.97068 -38.14304 -37.22476 -34.95344 -31.92381 -30.53080 -29.33644 -28.92935 -24.83481 -24.44404 -23.16116 -22.18924 -21.14926 -19.27765 -18.71249 -18.35535 -18.07222 -17.95241 -17.27839 -17.07741 -16.74428 -16.34824 -16.22282 -15.68763 -15.25803 -15.15792 -14.52554 -14.39483 -14.24403 -14.12695 -13.78590 -13.47804 -13.22312 -13.16864 -12.93915 -12.75986 -12.64685 -12.53081 -12.40241 -12.02092 -11.82062 -11.78942 -11.69193 -11.48513 -11.30131 -10.89675 -10.28250 -8.32869 -6.45279 1.03278 1.40623 1.44983 1.53435 1.55513 2.34199 2.66628 2.75901 3.01296 3.04108 3.05597 3.33145 3.67404 3.88878 3.91051 3.97427 4.09793 4.13051 4.17692 4.28089 4.40884 4.50179 4.61200 4.66860 4.79564 4.84478 4.86557 5.05394 5.10850 5.16573 5.38685 5.53443 5.94250 6.48547 6.62028 6.78432 7.26483 8.79105 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.003382 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.089495 B = 8278.154295 C = 8932.057537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.052 3.948 12 C 0.077 3.923 13 O -0.356 6.356 14 C 0.472 3.528 15 O -0.527 6.527 16 C -0.087 4.087 17 H 0.131 0.869 18 C -0.107 4.107 19 C -0.150 4.150 20 C 0.276 3.724 21 F -0.203 7.203 22 F -0.201 7.201 23 C -0.147 4.147 24 H 0.271 0.729 25 H -0.008 1.008 26 H -0.010 1.010 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.051 -18.214 7.639 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.025 4.025 12 C 0.004 3.996 13 O -0.272 6.272 14 C 0.316 3.684 15 O -0.417 6.417 16 C -0.106 4.106 17 H 0.149 0.851 18 C -0.145 4.145 19 C -0.188 4.188 20 C 0.240 3.760 21 F -0.184 7.184 22 F -0.182 7.182 23 C -0.185 4.185 24 H 0.080 0.920 25 H 0.010 0.990 26 H 0.007 0.993 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.126 -18.300 7.395 22.658 hybrid contribution -0.462 0.868 -0.036 0.984 sum 10.664 -17.432 7.359 21.720 Atomic orbital electron populations 1.70053 1.07703 1.28773 1.50320 1.25931 0.95956 1.03297 0.93829 0.85256 0.78141 0.76785 0.79381 1.19023 1.19926 1.19043 1.21369 0.94129 0.90947 1.52554 0.92103 1.19861 0.88551 0.84374 0.93875 1.87857 1.35536 1.14226 1.95332 1.22665 0.94603 0.83368 1.01836 1.23219 0.93169 0.99187 0.84020 1.86607 1.44089 1.54849 1.41684 1.23769 0.78483 0.77060 0.89100 1.90627 1.68085 1.38725 1.44265 1.21924 0.95370 1.04572 0.88756 0.85123 1.22146 0.98537 0.97142 0.96658 1.23151 1.00119 1.01801 0.93680 1.22033 0.91347 0.79433 0.83195 1.93001 1.84556 1.71058 1.69776 1.93020 1.83451 1.58249 1.83519 1.23407 0.97394 1.04862 0.92857 0.91973 0.99029 0.99269 0.92542 0.90049 0.87116 0.90902 0.88956 0.88176 0.86667 0.87015 0.87742 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.49 5.46 84.65 0.46 0.96 16 3 Si 0.98 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -32.86 9.43 25.60 0.24 -32.61 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.57 5.69 71.24 0.41 11.98 16 10 O -0.41 -19.83 10.30 -145.57 -1.50 -21.33 16 11 C 0.05 1.83 6.33 71.98 0.46 2.29 16 12 C 0.08 2.27 5.84 71.98 0.42 2.69 16 13 O -0.36 -10.95 10.19 -48.82 -0.50 -11.45 16 14 C 0.47 12.18 7.25 71.24 0.52 12.70 16 15 O -0.53 -15.19 15.17 21.98 0.33 -14.85 16 16 C -0.09 -1.62 3.37 -10.45 -0.04 -1.66 16 17 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 18 C -0.11 -1.48 6.18 31.32 0.19 -1.29 16 19 C -0.15 -1.72 6.41 31.32 0.20 -1.52 16 20 C 0.28 4.67 2.49 31.67 0.08 4.74 16 21 F -0.20 -3.97 17.16 44.97 0.77 -3.20 16 22 F -0.20 -4.14 17.17 44.97 0.77 -3.37 16 23 C -0.15 -2.55 5.90 31.90 0.19 -2.36 16 24 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.11 2.54 8.13 -2.39 -0.02 2.52 16 30 H 0.07 2.21 8.13 -2.38 -0.02 2.19 16 31 H 0.09 1.43 6.85 -2.39 -0.02 1.42 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.11 1.02 8.11 -2.39 -0.02 1.00 16 34 H 0.11 0.98 8.12 -2.39 -0.02 0.96 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.11 1.76 8.05 -2.38 -0.02 1.75 16 Total: -1.00 -70.00 319.01 6.40 -63.60 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.08 Total: 3.69 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 3.13 Total: -4.08 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.28 Total: -55.12 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -1.66 Total: -47.63 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 1.54 Total: -6.57 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.00 6.40 -63.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815244347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.042 kcal (2) G-P(sol) polarization free energy of solvation -70.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds