Wall clock time and date at job start Mon Mar 30 2020 23:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48503 * 109.47037 * 270.00191 * 3 2 1 5 5 H 1.48496 * 109.46967 * 29.99868 * 3 2 1 6 6 H 1.48497 * 109.47019 * 150.00296 * 3 2 1 7 7 C 1.37869 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00097 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99953 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00084 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46881 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46867 * 65.00259 * 12 11 10 14 14 C 1.34232 * 116.99450 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99784 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.43448 * 300.70049 * 16 14 13 18 18 C 1.54887 * 110.48739 * 63.24084 * 16 14 13 19 19 C 1.55029 * 102.68478 * 156.51628 * 18 16 14 20 20 C 1.54260 * 104.28181 * 322.23333 * 19 18 16 21 21 F 1.39896 * 110.03451 * 264.23538 * 20 19 18 22 22 F 1.39902 * 110.07170 * 142.81985 * 20 19 18 23 23 C 1.53883 * 106.59744 * 23.51963 * 20 19 18 24 24 H 0.97000 * 119.99915 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47388 * 60.00141 * 9 7 2 26 26 H 1.08996 * 109.47223 * 299.99819 * 9 7 2 27 27 H 1.08992 * 109.47198 * 60.00172 * 11 10 9 28 28 H 1.08997 * 109.46749 * 299.99934 * 11 10 9 29 29 H 1.09001 * 109.47002 * 184.99708 * 12 11 10 30 30 H 1.08993 * 109.46955 * 305.00145 * 12 11 10 31 31 H 1.08997 * 110.75944 * 274.94051 * 18 16 14 32 32 H 1.09005 * 110.75745 * 38.30631 * 18 16 14 33 33 H 1.08998 * 110.52377 * 203.48876 * 19 18 16 34 34 H 1.08999 * 110.47795 * 80.96202 * 19 18 16 35 35 H 1.09004 * 110.03053 * 240.71439 * 23 20 19 36 36 H 1.08997 * 110.07369 * 119.30799 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4124 -2.6541 -0.0009 12 6 5.8069 -4.1324 -0.0002 13 8 5.3727 -4.7498 -1.2406 14 6 5.6445 -6.0547 -1.3995 15 8 6.2263 -6.6607 -0.5311 16 6 5.2239 -6.7637 -2.6610 17 1 4.1430 -6.7045 -2.7886 18 6 5.9487 -6.1600 -3.8896 19 6 5.9022 -7.3206 -4.9164 20 6 6.1155 -8.5898 -4.0661 21 9 7.4653 -8.9572 -4.0837 22 9 5.3280 -9.6359 -4.5589 23 6 5.6842 -8.2358 -2.6320 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 5.8151 -2.1705 0.8890 28 1 5.8151 -2.1706 -0.8909 29 1 6.8897 -4.2195 0.0894 30 1 5.3310 -4.6350 0.8418 31 1 5.4127 -5.2881 -4.2643 32 1 6.9793 -5.9047 -3.6431 33 1 6.7014 -7.2140 -5.6499 34 1 4.9322 -7.3522 -5.4125 35 1 6.5266 -8.3503 -1.9498 36 1 4.8611 -8.8784 -2.3196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815244348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:40 Heat of formation + Delta-G solvation = -245.729579 kcal Electronic energy + Delta-G solvation = -21448.327370 eV Core-core repulsion = 17568.105202 eV Total energy + Delta-G solvation = -3880.222168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.20870 -47.27680 -40.69871 -37.80370 -36.95656 -36.12744 -32.74500 -30.65106 -29.74810 -28.60652 -27.56750 -23.68957 -22.16839 -21.90208 -21.48439 -20.32673 -18.37076 -17.63099 -17.22431 -17.05770 -16.60498 -16.23541 -16.03897 -15.41912 -14.97282 -14.60191 -14.55379 -14.44435 -13.84601 -13.60706 -13.57532 -13.06836 -12.82482 -12.56657 -12.46107 -12.23508 -12.14736 -11.80111 -11.77883 -11.33596 -11.22992 -11.06369 -10.91262 -10.72623 -10.57637 -10.43252 -9.91938 -9.25817 -8.96511 -8.56000 -6.16419 -4.16151 2.08379 2.50759 3.20615 3.27859 3.28399 3.40971 3.56971 3.68959 4.04809 4.30416 4.39747 4.45599 4.63804 4.69271 4.75755 4.83604 4.98353 5.06566 5.14656 5.28558 5.30614 5.41006 5.57691 5.59871 5.61946 5.66257 5.73130 5.88951 6.43613 6.50056 6.91276 7.52317 7.66997 7.89913 8.58165 8.94527 9.42111 10.96545 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.003102 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.543302 B = 9023.135277 C = 9394.204481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.376 6.376 11 C 0.057 3.943 12 C 0.073 3.927 13 O -0.336 6.336 14 C 0.470 3.530 15 O -0.512 6.512 16 C -0.086 4.086 17 H 0.128 0.872 18 C -0.110 4.110 19 C -0.161 4.161 20 C 0.283 3.717 21 F -0.196 7.196 22 F -0.197 7.197 23 C -0.157 4.157 24 H 0.267 0.733 25 H 0.004 0.996 26 H 0.001 0.999 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.679 -13.365 -8.572 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.020 4.020 12 C 0.000 4.000 13 O -0.251 6.251 14 C 0.313 3.687 15 O -0.401 6.401 16 C -0.105 4.105 17 H 0.146 0.854 18 C -0.148 4.148 19 C -0.199 4.199 20 C 0.247 3.753 21 F -0.177 7.177 22 F -0.178 7.178 23 C -0.195 4.195 24 H 0.077 0.923 25 H 0.022 0.978 26 H 0.019 0.981 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.571 -13.578 -8.292 21.574 hybrid contribution 0.629 0.963 0.161 1.161 sum 15.200 -12.616 -8.131 21.362 Atomic orbital electron populations 1.69871 1.06072 1.27165 1.50127 1.24767 0.94816 0.98767 0.94583 0.86843 0.80316 0.83729 0.78806 1.19866 1.20740 1.19117 1.20872 0.88173 0.95384 1.51459 0.89926 1.20638 0.96337 0.79189 0.94487 1.87975 1.16613 1.29830 1.95092 1.22400 0.86176 0.92754 1.00696 1.23225 0.99190 0.93219 0.84390 1.86591 1.73258 1.23778 1.41494 1.23227 0.75849 0.81278 0.88325 1.90652 1.39015 1.67070 1.43370 1.21770 1.04026 0.93231 0.91522 0.85410 1.22513 1.01883 0.98171 0.92202 1.23424 1.05989 0.91870 0.98586 1.21726 0.73161 0.84755 0.95693 1.93028 1.34318 1.92941 1.97445 1.93028 1.74062 1.61363 1.89375 1.23160 1.05807 0.95904 0.94589 0.92291 0.97831 0.98144 0.91747 0.92987 0.90205 0.90216 0.87916 0.89887 0.88276 0.87618 0.86750 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 20.88 27.47 -169.99 -4.67 16.22 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -15.25 9.99 -34.44 -0.34 -15.59 16 8 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.17 4.16 4.76 36.01 0.17 4.33 16 10 O -0.38 -8.50 10.30 -38.80 -0.40 -8.90 16 11 C 0.06 0.94 6.33 37.16 0.24 1.17 16 12 C 0.07 1.05 5.84 37.16 0.22 1.27 16 13 O -0.34 -5.01 10.19 -42.03 -0.43 -5.44 16 14 C 0.47 6.19 7.25 36.01 0.26 6.45 16 15 O -0.51 -7.77 15.19 -18.75 -0.28 -8.05 16 16 C -0.09 -0.82 3.36 -90.11 -0.30 -1.12 16 17 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 18 C -0.11 -0.84 6.33 -24.66 -0.16 -1.00 16 19 C -0.16 -1.09 6.40 -25.00 -0.16 -1.25 16 20 C 0.28 2.57 2.58 -25.61 -0.07 2.50 16 21 F -0.20 -2.10 17.04 2.25 0.04 -2.07 16 22 F -0.20 -2.02 17.04 2.25 0.04 -1.98 16 23 C -0.16 -1.44 5.87 -25.61 -0.15 -1.59 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 26 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 30 H 0.08 1.19 8.13 -51.93 -0.42 0.77 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 33 H 0.10 0.58 8.11 -51.93 -0.42 0.16 16 34 H 0.11 0.60 8.12 -51.93 -0.42 0.17 16 35 H 0.11 1.20 6.75 -51.93 -0.35 0.85 16 36 H 0.10 0.87 8.02 -51.93 -0.42 0.45 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -33.36 315.13 -5.49 -38.85 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.92 Total: -4.12 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.39 Total: -2.82 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.77 Total: -26.43 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.11 Total: -22.39 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.36 -5.49 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815244348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.875 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds