Wall clock time and date at job start Mon Mar 30 2020 23:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48503 * 109.47037 * 270.00191 * 3 2 1 5 5 H 1.48496 * 109.46967 * 29.99868 * 3 2 1 6 6 H 1.48497 * 109.47019 * 150.00296 * 3 2 1 7 7 C 1.37869 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00097 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99953 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00084 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46881 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46867 * 65.00259 * 12 11 10 14 14 C 1.34232 * 116.99450 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99784 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.43448 * 300.70049 * 16 14 13 18 18 C 1.54887 * 110.48739 * 63.24084 * 16 14 13 19 19 C 1.55029 * 102.68478 * 156.51628 * 18 16 14 20 20 C 1.54260 * 104.28181 * 322.23333 * 19 18 16 21 21 F 1.39896 * 110.03451 * 264.23538 * 20 19 18 22 22 F 1.39902 * 110.07170 * 142.81985 * 20 19 18 23 23 C 1.53883 * 106.59744 * 23.51963 * 20 19 18 24 24 H 0.97000 * 119.99915 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47388 * 60.00141 * 9 7 2 26 26 H 1.08996 * 109.47223 * 299.99819 * 9 7 2 27 27 H 1.08992 * 109.47198 * 60.00172 * 11 10 9 28 28 H 1.08997 * 109.46749 * 299.99934 * 11 10 9 29 29 H 1.09001 * 109.47002 * 184.99708 * 12 11 10 30 30 H 1.08993 * 109.46955 * 305.00145 * 12 11 10 31 31 H 1.08997 * 110.75944 * 274.94051 * 18 16 14 32 32 H 1.09005 * 110.75745 * 38.30631 * 18 16 14 33 33 H 1.08998 * 110.52377 * 203.48876 * 19 18 16 34 34 H 1.08999 * 110.47795 * 80.96202 * 19 18 16 35 35 H 1.09004 * 110.03053 * 240.71439 * 23 20 19 36 36 H 1.08997 * 110.07369 * 119.30799 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4124 -2.6541 -0.0009 12 6 5.8069 -4.1324 -0.0002 13 8 5.3727 -4.7498 -1.2406 14 6 5.6445 -6.0547 -1.3995 15 8 6.2263 -6.6607 -0.5311 16 6 5.2239 -6.7637 -2.6610 17 1 4.1430 -6.7045 -2.7886 18 6 5.9487 -6.1600 -3.8896 19 6 5.9022 -7.3206 -4.9164 20 6 6.1155 -8.5898 -4.0661 21 9 7.4653 -8.9572 -4.0837 22 9 5.3280 -9.6359 -4.5589 23 6 5.6842 -8.2358 -2.6320 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 5.8151 -2.1705 0.8890 28 1 5.8151 -2.1706 -0.8909 29 1 6.8897 -4.2195 0.0894 30 1 5.3310 -4.6350 0.8418 31 1 5.4127 -5.2881 -4.2643 32 1 6.9793 -5.9047 -3.6431 33 1 6.7014 -7.2140 -5.6499 34 1 4.9322 -7.3522 -5.4125 35 1 6.5266 -8.3503 -1.9498 36 1 4.8611 -8.8784 -2.3196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815244348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:39 Heat of formation + Delta-G solvation = -266.796015 kcal Electronic energy + Delta-G solvation = -21449.240879 eV Core-core repulsion = 17568.105202 eV Total energy + Delta-G solvation = -3881.135677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.97476 -48.05570 -41.74830 -38.99460 -38.15190 -37.27422 -34.88428 -31.98928 -30.53644 -29.75060 -29.09508 -24.70086 -23.98540 -23.19758 -22.19197 -21.23712 -19.25365 -19.10030 -18.47611 -18.07519 -17.90792 -17.35676 -16.88521 -16.82648 -16.41187 -16.28607 -15.39534 -15.24416 -15.07920 -14.67143 -14.43961 -14.38732 -14.13035 -14.08644 -13.46203 -13.23384 -13.01240 -12.97352 -12.84330 -12.63485 -12.50330 -12.26698 -12.01158 -11.86053 -11.75198 -11.71186 -11.49559 -11.34187 -10.92297 -10.40035 -8.36183 -6.44793 1.05800 1.35829 1.39124 1.49714 1.53290 2.30999 2.72123 2.86868 2.94899 2.96767 2.97747 3.33781 3.69460 3.82275 3.92340 3.96281 4.10073 4.12187 4.19431 4.30182 4.38135 4.50204 4.59305 4.67164 4.71689 4.83297 4.89331 4.99694 5.01275 5.05422 5.37483 5.43716 5.91866 6.58754 6.61622 6.72034 7.19672 8.81010 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.003102 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.543302 B = 9023.135277 C = 9394.204481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.548 4.548 8 H 0.028 0.972 9 C 0.179 3.821 10 O -0.407 6.407 11 C 0.050 3.950 12 C 0.072 3.928 13 O -0.351 6.351 14 C 0.469 3.531 15 O -0.537 6.537 16 C -0.085 4.085 17 H 0.142 0.858 18 C -0.106 4.106 19 C -0.151 4.151 20 C 0.278 3.722 21 F -0.207 7.207 22 F -0.204 7.204 23 C -0.154 4.154 24 H 0.273 0.727 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.610 -11.938 -9.459 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.165 1.165 7 C -0.586 4.586 8 H 0.046 0.954 9 C 0.103 3.897 10 O -0.327 6.327 11 C -0.026 4.026 12 C -0.001 4.001 13 O -0.267 6.267 14 C 0.314 3.686 15 O -0.427 6.427 16 C -0.104 4.104 17 H 0.159 0.841 18 C -0.143 4.143 19 C -0.189 4.189 20 C 0.242 3.758 21 F -0.189 7.189 22 F -0.185 7.185 23 C -0.192 4.192 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.521 -12.180 -9.185 22.486 hybrid contribution -0.004 0.372 0.464 0.595 sum 16.517 -11.807 -8.720 22.097 Atomic orbital electron populations 1.70037 1.08383 1.28828 1.51024 1.25874 0.95807 1.03538 0.93388 0.85580 0.79502 0.77206 0.79871 1.18247 1.20149 1.16471 1.21182 0.91136 0.93794 1.52508 0.95367 1.20359 0.93188 0.80625 0.95511 1.87917 1.20718 1.28684 1.95389 1.22756 0.82785 0.94410 1.02689 1.23261 1.00811 0.92025 0.83997 1.86589 1.73662 1.24770 1.41644 1.23893 0.75033 0.80625 0.89066 1.90638 1.40241 1.67308 1.44519 1.21904 1.04976 0.92954 0.90547 0.84077 1.22540 1.01710 0.98734 0.91314 1.23435 1.07476 0.89772 0.98190 1.21952 0.72460 0.85366 0.96008 1.93006 1.35211 1.93134 1.97501 1.93013 1.74204 1.61913 1.89418 1.23117 1.05478 0.95989 0.94656 0.91800 0.96505 0.96562 0.89291 0.91271 0.87122 0.91477 0.86850 0.89947 0.86850 0.86021 0.88225 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.66 13.96 21.44 0.30 -58.36 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.96 41.90 27.47 68.60 1.88 43.78 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 7 C -0.55 -32.83 9.99 25.60 0.26 -32.57 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.18 8.59 4.76 71.24 0.34 8.93 16 10 O -0.41 -18.18 10.30 -145.57 -1.50 -19.68 16 11 C 0.05 1.53 6.33 71.98 0.46 1.98 16 12 C 0.07 1.98 5.84 71.98 0.42 2.40 16 13 O -0.35 -10.16 10.19 -48.79 -0.50 -10.65 16 14 C 0.47 12.07 7.25 71.24 0.52 12.59 16 15 O -0.54 -16.19 15.19 21.97 0.33 -15.85 16 16 C -0.08 -1.52 3.36 -10.47 -0.04 -1.55 16 17 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 18 C -0.11 -1.40 6.33 31.93 0.20 -1.20 16 19 C -0.15 -1.72 6.40 31.72 0.20 -1.51 16 20 C 0.28 4.72 2.58 31.32 0.08 4.80 16 21 F -0.21 -4.28 17.04 44.97 0.77 -3.51 16 22 F -0.20 -3.97 17.04 44.97 0.77 -3.20 16 23 C -0.15 -2.74 5.87 31.32 0.18 -2.56 16 24 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 26 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.11 2.34 8.13 -2.39 -0.02 2.32 16 30 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.12 8.05 -2.38 -0.02 1.10 16 33 H 0.11 1.02 8.11 -2.39 -0.02 1.00 16 34 H 0.12 1.03 8.12 -2.39 -0.02 1.01 16 35 H 0.10 2.10 6.75 -2.39 -0.02 2.08 16 36 H 0.11 1.79 8.02 -2.39 -0.02 1.77 16 Total: -1.00 -74.12 315.13 6.16 -67.96 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.03 Total: 7.07 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 3.08 Total: -7.56 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.30 Total: -58.36 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -1.66 Total: -46.19 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 1.53 Total: -6.71 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.78 kcal Total: -74.12 6.16 -67.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815244348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.837 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds