Wall clock time and date at job start Tue Mar 31 2020 00:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38201 * 120.09357 * 2 1 4 4 F 1.35096 * 119.94608 * 359.97338 * 3 2 1 5 5 C 1.38560 * 120.09644 * 180.29848 * 3 2 1 6 6 C 1.38351 * 120.27710 * 359.67521 * 5 3 2 7 7 C 1.37933 * 120.18207 * 0.04872 * 6 5 3 8 8 C 1.39586 * 120.08915 * 179.72063 * 2 1 3 9 9 C 1.47738 * 120.13648 * 359.97438 * 8 2 1 10 10 O 1.21468 * 120.00272 * 353.39744 * 9 8 2 11 11 O 1.34706 * 120.00180 * 173.39444 * 9 8 2 12 12 C 1.45203 * 117.00415 * 185.12616 * 11 9 8 13 13 C 1.53003 * 109.47275 * 184.56481 * 12 11 9 14 14 C 1.50695 * 115.54679 * 175.20298 * 13 12 11 15 15 H 1.07999 * 119.99767 * 209.85349 * 14 13 12 16 16 C 1.37875 * 120.00215 * 29.86137 * 14 13 12 17 17 N 1.31516 * 119.99674 * 209.13515 * 16 14 13 18 18 Si 1.86799 * 120.00319 * 29.12240 * 16 14 13 19 19 H 1.48499 * 109.47305 * 268.16018 * 18 16 14 20 20 H 1.48495 * 109.46888 * 28.16314 * 18 16 14 21 21 H 1.48492 * 109.47074 * 148.16193 * 18 16 14 22 22 C 1.53002 * 117.49647 * 320.87210 * 13 12 11 23 23 C 1.53001 * 117.50026 * 29.53138 * 13 12 11 24 24 H 1.08998 * 109.47390 * 264.57190 * 1 2 3 25 25 H 1.09003 * 109.47125 * 24.57699 * 1 2 3 26 26 H 1.09007 * 109.47077 * 144.57231 * 1 2 3 27 27 H 1.07995 * 119.85625 * 179.69697 * 5 3 2 28 28 H 1.08008 * 119.90543 * 180.02562 * 6 5 3 29 29 H 1.07997 * 120.05056 * 180.02562 * 7 6 5 30 30 H 1.08996 * 109.46891 * 64.56133 * 12 11 9 31 31 H 1.08998 * 109.46641 * 304.56142 * 12 11 9 32 32 H 0.97005 * 120.00144 * 180.02562 * 17 16 14 33 33 H 1.08998 * 117.49402 * 215.00510 * 22 13 12 34 34 H 1.08995 * 117.49674 * 0.02637 * 22 13 12 35 35 H 1.09006 * 117.49552 * 359.97438 * 23 13 12 36 36 H 1.08995 * 117.49474 * 144.97431 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5253 2.3662 -0.0005 5 6 3.5855 1.1958 -0.0062 6 6 4.2831 0.0011 -0.0057 7 6 3.6032 -1.1990 0.0000 8 6 2.2068 -1.2077 0.0059 9 6 1.4731 -2.4901 0.0127 10 8 0.2646 -2.4978 0.1342 11 8 2.1445 -3.6509 -0.1158 12 6 1.3518 -4.8633 -0.2157 13 6 2.2803 -6.0792 -0.2402 14 6 1.5945 -7.4210 -0.2283 15 1 2.0814 -8.2723 0.2240 16 6 0.3455 -7.5619 -0.7950 17 7 -0.4875 -8.4689 -0.3335 18 14 -0.1637 -6.4642 -2.2182 19 1 -0.8547 -5.2598 -1.6918 20 1 1.0419 -6.0501 -2.9798 21 1 -1.0832 -7.2103 -3.1143 22 6 3.5820 -5.9580 -1.0350 23 6 3.6168 -5.9623 0.4954 24 1 -0.3634 -0.0972 1.0230 25 1 -0.3633 0.9346 -0.4274 26 1 -0.3633 -0.8374 -0.5957 27 1 4.1231 2.1324 -0.0112 28 1 5.3632 0.0081 -0.0102 29 1 4.1499 -2.1304 0.0008 30 1 0.7625 -4.8376 -1.1323 31 1 0.6846 -4.9329 0.6434 32 1 -1.3661 -8.5684 -0.7324 33 1 3.9424 -6.8489 -1.5493 34 1 3.7771 -5.0120 -1.5400 35 1 3.8348 -5.0191 0.9964 36 1 3.9998 -6.8559 0.9881 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817721179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:30 Heat of formation + Delta-G solvation = -70.372624 kcal Electronic energy + Delta-G solvation = -21359.983428 eV Core-core repulsion = 17918.134533 eV Total energy + Delta-G solvation = -3441.848895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -49.13649 -40.54019 -38.81271 -37.12564 -35.43890 -32.90773 -32.38407 -31.26082 -27.89027 -27.21310 -25.46343 -24.00233 -21.98157 -21.38710 -20.92752 -19.19896 -18.32028 -17.17647 -16.56984 -16.43303 -16.16441 -15.99591 -15.76845 -15.51487 -14.74084 -14.04191 -13.79616 -13.63860 -13.43812 -13.05658 -12.91371 -12.59851 -12.47438 -12.16121 -12.05711 -11.81877 -11.48151 -11.11604 -10.93351 -10.47868 -10.42568 -10.23590 -9.96270 -9.60531 -9.30877 -9.22956 -8.89440 -8.72915 -8.30192 -6.39268 -4.18172 0.42193 0.88983 2.51028 2.85032 3.16299 3.31483 3.35638 3.44237 4.00575 4.25695 4.44030 4.49041 4.63944 4.70037 4.79876 4.99098 5.28146 5.37914 5.48525 5.65101 5.68035 5.70259 5.81343 5.84335 5.97392 5.99206 6.00305 6.15688 6.25264 6.52024 6.53410 6.58038 6.69901 6.92419 6.97671 7.19996 7.59823 7.98539 8.34403 8.75964 9.31867 10.72451 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.004958 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.002771 B = 5646.100615 C = 6366.222978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.054 4.054 3 C 0.080 3.920 4 F -0.135 7.135 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.066 4.066 8 C -0.096 4.096 9 C 0.499 3.501 10 O -0.498 6.498 11 O -0.347 6.347 12 C 0.096 3.904 13 C 0.012 3.988 14 C -0.500 4.500 15 H 0.084 0.916 16 C 0.089 3.911 17 N -0.860 5.860 18 Si 0.850 3.150 19 H -0.270 1.270 20 H -0.258 1.258 21 H -0.287 1.287 22 C -0.205 4.205 23 C -0.180 4.180 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.149 0.851 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.269 0.731 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.758 18.461 -0.019 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.056 4.056 3 C 0.061 3.939 4 F -0.113 7.113 5 C -0.138 4.138 6 C -0.130 4.130 7 C -0.084 4.084 8 C -0.097 4.097 9 C 0.343 3.657 10 O -0.388 6.388 11 O -0.263 6.263 12 C 0.024 3.976 13 C 0.010 3.990 14 C -0.535 4.535 15 H 0.102 0.898 16 C -0.118 4.118 17 N -0.493 5.493 18 Si 0.677 3.323 19 H -0.197 1.197 20 H -0.182 1.182 21 H -0.214 1.214 22 C -0.243 4.243 23 C -0.218 4.218 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.167 0.833 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.162 18.317 0.024 19.667 hybrid contribution -0.552 0.683 -0.804 1.190 sum 6.610 19.000 -0.780 20.132 Atomic orbital electron populations 1.21104 0.88867 1.03933 1.04327 1.20040 0.97941 0.90399 0.97182 1.17278 0.89955 0.80788 1.05900 1.91494 1.80393 1.45326 1.94112 1.21382 0.92048 1.00241 1.00128 1.21007 1.00705 0.90973 1.00347 1.21637 0.92681 0.99698 0.94384 1.18917 0.93612 0.90115 1.07090 1.20953 0.85926 0.84885 0.73909 1.90792 1.15057 1.87811 1.45093 1.86485 1.42045 1.15476 1.82306 1.23338 0.93617 0.78692 1.01904 1.19316 0.86221 0.92362 1.01057 1.20120 1.01654 0.92004 1.39754 0.89778 1.24926 0.95335 0.95302 0.96252 1.70106 1.06382 1.35397 1.37398 0.87439 0.79353 0.80878 0.84582 1.19709 1.18246 1.21370 1.23139 1.07196 1.00671 0.93247 1.22757 1.03861 1.00836 0.94335 0.89906 0.91703 0.88089 0.84202 0.84061 0.83344 0.91830 0.90229 0.92075 0.89837 0.91018 0.90391 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.63 36.00 0.31 -1.38 16 2 C -0.05 -0.73 5.92 -104.13 -0.62 -1.35 16 3 C 0.08 0.93 7.24 -39.48 -0.29 0.64 16 4 F -0.13 -1.58 16.38 2.25 0.04 -1.54 16 5 C -0.12 -1.09 10.02 -39.42 -0.39 -1.49 16 6 C -0.11 -1.00 10.03 -39.65 -0.40 -1.39 16 7 C -0.07 -0.76 9.61 -39.17 -0.38 -1.13 16 8 C -0.10 -1.38 5.87 -104.99 -0.62 -1.99 16 9 C 0.50 8.99 7.82 34.61 0.27 9.26 16 10 O -0.50 -10.03 13.04 -19.24 -0.25 -10.28 16 11 O -0.35 -6.69 7.76 -40.51 -0.31 -7.01 16 12 C 0.10 2.19 4.56 37.16 0.17 2.36 16 13 C 0.01 0.27 1.89 -155.66 -0.29 -0.02 16 14 C -0.50 -13.68 9.45 -34.44 -0.33 -14.00 16 15 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 16 C 0.09 2.47 5.24 -17.82 -0.09 2.37 16 17 N -0.86 -25.09 13.96 55.43 0.77 -24.31 16 18 Si 0.85 20.95 24.80 -169.99 -4.22 16.73 16 19 H -0.27 -6.64 6.58 56.52 0.37 -6.26 16 20 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C -0.20 -4.25 9.66 -26.69 -0.26 -4.50 16 23 C -0.18 -3.66 9.63 -26.69 -0.26 -3.91 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.75 7.49 -51.93 -0.39 0.36 16 26 H 0.10 1.55 5.80 -51.93 -0.30 1.25 16 27 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.15 1.62 7.63 -52.49 -0.40 1.22 16 30 H 0.06 1.52 3.25 -51.93 -0.17 1.35 16 31 H 0.08 1.88 7.98 -51.93 -0.41 1.46 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.07 1.37 7.81 -51.93 -0.41 0.97 16 35 H 0.08 1.43 7.50 -51.93 -0.39 1.04 16 36 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -29.59 306.69 -6.68 -36.27 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.17 Total: 2.08 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -3.17 Total: -16.55 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.77 Total: -24.31 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.57 Total: -17.29 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.22 Total: 16.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.59 -6.68 -36.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817721179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.103 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds