Wall clock time and date at job start Tue Mar 31 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38201 * 120.09357 * 2 1 4 4 F 1.35096 * 119.94608 * 359.97338 * 3 2 1 5 5 C 1.38560 * 120.09644 * 180.29848 * 3 2 1 6 6 C 1.38351 * 120.27710 * 359.67521 * 5 3 2 7 7 C 1.37933 * 120.18207 * 0.04872 * 6 5 3 8 8 C 1.39586 * 120.08915 * 179.72063 * 2 1 3 9 9 C 1.47738 * 120.13648 * 359.97438 * 8 2 1 10 10 O 1.21468 * 120.00272 * 353.39744 * 9 8 2 11 11 O 1.34706 * 120.00180 * 173.39444 * 9 8 2 12 12 C 1.45203 * 117.00415 * 185.12616 * 11 9 8 13 13 C 1.53003 * 109.47275 * 184.56481 * 12 11 9 14 14 C 1.50695 * 115.54679 * 175.20298 * 13 12 11 15 15 H 1.07999 * 119.99767 * 209.85349 * 14 13 12 16 16 C 1.37875 * 120.00215 * 29.86137 * 14 13 12 17 17 N 1.31516 * 119.99674 * 209.13515 * 16 14 13 18 18 Si 1.86799 * 120.00319 * 29.12240 * 16 14 13 19 19 H 1.48499 * 109.47305 * 268.16018 * 18 16 14 20 20 H 1.48495 * 109.46888 * 28.16314 * 18 16 14 21 21 H 1.48492 * 109.47074 * 148.16193 * 18 16 14 22 22 C 1.53002 * 117.49647 * 320.87210 * 13 12 11 23 23 C 1.53001 * 117.50026 * 29.53138 * 13 12 11 24 24 H 1.08998 * 109.47390 * 264.57190 * 1 2 3 25 25 H 1.09003 * 109.47125 * 24.57699 * 1 2 3 26 26 H 1.09007 * 109.47077 * 144.57231 * 1 2 3 27 27 H 1.07995 * 119.85625 * 179.69697 * 5 3 2 28 28 H 1.08008 * 119.90543 * 180.02562 * 6 5 3 29 29 H 1.07997 * 120.05056 * 180.02562 * 7 6 5 30 30 H 1.08996 * 109.46891 * 64.56133 * 12 11 9 31 31 H 1.08998 * 109.46641 * 304.56142 * 12 11 9 32 32 H 0.97005 * 120.00144 * 180.02562 * 17 16 14 33 33 H 1.08998 * 117.49402 * 215.00510 * 22 13 12 34 34 H 1.08995 * 117.49674 * 0.02637 * 22 13 12 35 35 H 1.09006 * 117.49552 * 359.97438 * 23 13 12 36 36 H 1.08995 * 117.49474 * 144.97431 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5253 2.3662 -0.0005 5 6 3.5855 1.1958 -0.0062 6 6 4.2831 0.0011 -0.0057 7 6 3.6032 -1.1990 0.0000 8 6 2.2068 -1.2077 0.0059 9 6 1.4731 -2.4901 0.0127 10 8 0.2646 -2.4978 0.1342 11 8 2.1445 -3.6509 -0.1158 12 6 1.3518 -4.8633 -0.2157 13 6 2.2803 -6.0792 -0.2402 14 6 1.5945 -7.4210 -0.2283 15 1 2.0814 -8.2723 0.2240 16 6 0.3455 -7.5619 -0.7950 17 7 -0.4875 -8.4689 -0.3335 18 14 -0.1637 -6.4642 -2.2182 19 1 -0.8547 -5.2598 -1.6918 20 1 1.0419 -6.0501 -2.9798 21 1 -1.0832 -7.2103 -3.1143 22 6 3.5820 -5.9580 -1.0350 23 6 3.6168 -5.9623 0.4954 24 1 -0.3634 -0.0972 1.0230 25 1 -0.3633 0.9346 -0.4274 26 1 -0.3633 -0.8374 -0.5957 27 1 4.1231 2.1324 -0.0112 28 1 5.3632 0.0081 -0.0102 29 1 4.1499 -2.1304 0.0008 30 1 0.7625 -4.8376 -1.1323 31 1 0.6846 -4.9329 0.6434 32 1 -1.3661 -8.5684 -0.7324 33 1 3.9424 -6.8489 -1.5493 34 1 3.7771 -5.0120 -1.5400 35 1 3.8348 -5.0191 0.9964 36 1 3.9998 -6.8559 0.9881 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817721179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:23 Heat of formation + Delta-G solvation = -86.139719 kcal Electronic energy + Delta-G solvation = -21360.667141 eV Core-core repulsion = 17918.134533 eV Total energy + Delta-G solvation = -3442.532607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -50.00518 -41.87527 -39.93142 -38.70595 -37.03002 -34.47881 -33.84322 -32.22603 -29.50368 -28.36200 -27.29087 -25.16008 -23.04514 -22.95072 -22.11952 -21.09476 -19.50577 -18.80671 -18.04907 -17.74842 -17.33618 -16.83886 -16.80584 -16.77975 -16.58652 -15.61466 -15.18236 -14.87116 -14.69995 -14.39307 -14.34329 -14.15717 -13.57392 -13.51493 -13.06060 -13.03763 -12.94348 -12.84587 -12.38293 -12.32744 -12.07744 -12.03385 -11.60460 -11.25450 -11.08535 -10.58091 -10.31272 -10.17315 -9.76127 -8.53483 -6.33576 -0.54606 0.04225 1.18694 1.24971 1.31136 1.38197 1.48877 2.20167 2.49356 2.66479 3.13007 3.35909 3.43912 3.58023 3.79366 3.88106 3.94116 4.05721 4.18282 4.19685 4.43746 4.53105 4.56319 4.57881 4.78467 4.83463 4.96362 4.98029 5.00526 5.08989 5.18739 5.20239 5.26236 5.44128 5.57525 5.60056 5.72617 6.20547 6.55567 6.59833 7.17674 8.62805 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.004958 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.002771 B = 5646.100615 C = 6366.222978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 C 0.071 3.929 4 F -0.138 7.138 5 C -0.099 4.099 6 C -0.095 4.095 7 C -0.064 4.064 8 C -0.120 4.120 9 C 0.494 3.506 10 O -0.529 6.529 11 O -0.339 6.339 12 C 0.109 3.891 13 C -0.028 4.028 14 C -0.507 4.507 15 H 0.051 0.949 16 C 0.044 3.956 17 N -0.907 5.907 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.244 1.244 21 H -0.283 1.283 22 C -0.183 4.183 23 C -0.159 4.159 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.177 0.823 28 H 0.185 0.815 29 H 0.157 0.843 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.272 0.728 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.854 21.560 -0.725 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.072 4.072 3 C 0.052 3.948 4 F -0.116 7.116 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.082 4.082 8 C -0.121 4.121 9 C 0.341 3.659 10 O -0.421 6.421 11 O -0.255 6.255 12 C 0.036 3.964 13 C -0.029 4.029 14 C -0.543 4.543 15 H 0.069 0.931 16 C -0.159 4.159 17 N -0.542 5.542 18 Si 0.732 3.268 19 H -0.202 1.202 20 H -0.167 1.167 21 H -0.209 1.209 22 C -0.220 4.220 23 C -0.196 4.196 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.194 0.806 28 H 0.202 0.798 29 H 0.175 0.825 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.285 21.432 -0.689 23.782 hybrid contribution -1.405 -0.193 -0.499 1.504 sum 8.879 21.240 -1.189 23.052 Atomic orbital electron populations 1.20997 0.89839 1.03527 1.03609 1.20057 0.97642 0.91145 0.98366 1.17428 0.91018 0.79945 1.06452 1.91490 1.80719 1.45212 1.94198 1.21849 0.90809 1.02075 0.96971 1.21460 1.02606 0.89425 0.97775 1.21848 0.91252 1.01458 0.93649 1.18766 0.94793 0.88024 1.10553 1.21742 0.85970 0.85435 0.72727 1.90788 1.16576 1.88084 1.46642 1.86455 1.41221 1.15031 1.82760 1.22819 0.93239 0.80155 1.00199 1.19207 0.87521 0.90856 1.05335 1.20294 1.01852 0.93190 1.38964 0.93090 1.25559 0.95547 0.96687 0.98117 1.70185 1.07106 1.37887 1.39059 0.86544 0.79468 0.78965 0.81841 1.20218 1.16713 1.20945 1.23122 1.03354 1.01835 0.93735 1.22820 1.00240 1.02077 0.94488 0.90496 0.90288 0.90592 0.80560 0.79811 0.82540 0.93199 0.92540 0.91860 0.89914 0.88611 0.87847 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.36 8.63 71.24 0.61 -2.75 16 2 C -0.07 -1.81 5.92 -19.55 -0.12 -1.93 16 3 C 0.07 1.43 7.24 22.34 0.16 1.60 16 4 F -0.14 -2.89 16.38 44.97 0.74 -2.15 16 5 C -0.10 -1.30 10.02 22.37 0.22 -1.08 16 6 C -0.10 -1.16 10.03 22.22 0.22 -0.93 16 7 C -0.06 -1.23 9.61 22.54 0.22 -1.02 16 8 C -0.12 -3.26 5.87 -20.10 -0.12 -3.38 16 9 C 0.49 17.75 7.82 70.33 0.55 18.30 16 10 O -0.53 -22.06 13.04 19.94 0.26 -21.80 16 11 O -0.34 -12.70 7.76 -56.16 -0.44 -13.14 16 12 C 0.11 4.95 4.56 71.98 0.33 5.28 16 13 C -0.03 -1.31 1.89 -52.93 -0.10 -1.41 16 14 C -0.51 -28.48 9.45 25.60 0.24 -28.24 16 15 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 16 C 0.04 2.49 5.24 84.65 0.44 2.94 16 17 N -0.91 -54.99 13.96 21.45 0.30 -54.69 16 18 Si 0.91 44.27 24.80 68.60 1.70 45.97 16 19 H -0.28 -13.55 6.58 99.48 0.65 -12.90 16 20 H -0.24 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 22 C -0.18 -7.12 9.66 30.62 0.30 -6.83 16 23 C -0.16 -6.12 9.63 30.62 0.29 -5.82 16 24 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.08 1.83 7.49 -2.39 -0.02 1.81 16 26 H 0.08 2.45 5.80 -2.38 -0.01 2.43 16 27 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 28 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 29 H 0.16 2.75 7.63 -2.91 -0.02 2.73 16 30 H 0.05 2.39 3.25 -2.39 -0.01 2.39 16 31 H 0.06 2.77 7.98 -2.39 -0.02 2.75 16 32 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 33 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.10 3.29 7.81 -2.39 -0.02 3.27 16 35 H 0.10 3.45 7.50 -2.38 -0.02 3.43 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -67.37 306.69 6.87 -60.50 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.05 Total: 10.58 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 3.26 Total: -25.27 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.30 Total: -54.69 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.18 Total: -34.93 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.74 Total: -2.15 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.70 Total: 45.97 kcal Total: -67.37 6.87 -60.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817721179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.642 kcal (2) G-P(sol) polarization free energy of solvation -67.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds