Wall clock time and date at job start Tue Mar 31 2020 00:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38199 * 120.08497 * 2 1 4 4 F 1.35100 * 119.95552 * 359.96827 * 3 2 1 5 5 C 1.38554 * 120.09375 * 179.97438 * 3 2 1 6 6 C 1.38353 * 120.27983 * 0.02944 * 5 3 2 7 7 C 1.37932 * 120.17900 * 0.25280 * 6 5 3 8 8 C 1.39575 * 120.08998 * 179.97438 * 2 1 3 9 9 C 1.47726 * 120.13887 * 0.02562 * 8 2 1 10 10 O 1.21470 * 120.00063 * 6.22338 * 9 8 2 11 11 O 1.34722 * 119.99996 * 186.22607 * 9 8 2 12 12 C 1.45201 * 116.99678 * 185.24635 * 11 9 8 13 13 C 1.50700 * 112.84801 * 285.28612 * 12 11 9 14 14 H 1.08006 * 119.99938 * 124.71745 * 13 12 11 15 15 C 1.37878 * 120.00104 * 304.71499 * 13 12 11 16 16 N 1.31516 * 119.99974 * 184.79728 * 15 13 12 17 17 Si 1.86798 * 120.00013 * 4.80102 * 15 13 12 18 18 H 1.48500 * 109.47250 * 94.50369 * 17 15 13 19 19 H 1.48506 * 109.47078 * 214.50324 * 17 15 13 20 20 H 1.48502 * 109.46988 * 334.49966 * 17 15 13 21 21 C 1.53784 * 113.61337 * 153.98648 * 12 11 9 22 22 C 1.53782 * 87.08224 * 220.01553 * 21 12 11 23 23 C 1.53778 * 113.61672 * 56.48796 * 12 11 9 24 24 H 1.09001 * 109.47611 * 96.94316 * 1 2 3 25 25 H 1.09008 * 109.46379 * 216.93825 * 1 2 3 26 26 H 1.09001 * 109.47109 * 336.93362 * 1 2 3 27 27 H 1.08001 * 119.86039 * 180.02562 * 5 3 2 28 28 H 1.08005 * 119.91132 * 179.97438 * 6 5 3 29 29 H 1.07995 * 120.04710 * 179.70333 * 7 6 5 30 30 H 0.97002 * 120.00208 * 179.97438 * 16 15 13 31 31 H 1.09005 * 113.61249 * 334.56384 * 21 12 11 32 32 H 1.08994 * 113.61936 * 105.46360 * 21 12 11 33 33 H 1.08996 * 113.61417 * 270.88471 * 22 21 12 34 34 H 1.08994 * 113.69039 * 139.98703 * 22 21 12 35 35 H 1.09005 * 113.61253 * 254.52559 * 23 12 11 36 36 H 1.08992 * 113.61826 * 25.34483 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1998 1.1958 0.0000 4 9 1.5252 2.3663 -0.0006 5 6 3.5854 1.1960 0.0005 6 6 4.2832 0.0014 0.0005 7 6 3.6033 -1.1988 -0.0054 8 6 2.2068 -1.2077 0.0005 9 6 1.4733 -2.4899 0.0005 10 8 0.2640 -2.4979 -0.1140 11 8 2.1456 -3.6505 0.1276 12 6 1.3758 -4.8753 0.0020 13 6 0.5300 -5.1619 1.2159 14 1 -0.5341 -5.3128 1.1093 15 6 1.1147 -5.2317 2.4627 16 7 0.3946 -5.5744 3.5084 17 14 2.9296 -4.8392 2.6664 18 1 3.0876 -3.4136 3.0511 19 1 3.5073 -5.7047 3.7259 20 1 3.6367 -5.0874 1.3844 21 6 2.2072 -6.0797 -0.4701 22 6 1.0002 -6.4727 -1.3383 23 6 0.6066 -4.9861 -1.3249 24 1 -0.3634 -0.1242 -1.0201 25 1 -0.3632 -0.8215 0.6177 26 1 -0.3633 0.9455 0.4026 27 1 4.1229 2.1327 0.0010 28 1 5.3632 0.0085 0.0005 29 1 4.1501 -2.1300 -0.0103 30 1 0.8060 -5.6239 4.3855 31 1 3.0888 -5.8021 -1.0480 32 1 2.4272 -6.7958 0.3216 33 1 0.2862 -7.1181 -0.8268 34 1 1.2735 -6.8431 -2.3262 35 1 -0.4659 -4.8194 -1.2232 36 1 1.0496 -4.4084 -2.1361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817735222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:59 Heat of formation + Delta-G solvation = -94.714970 kcal Electronic energy + Delta-G solvation = -22114.509425 eV Core-core repulsion = 18671.604967 eV Total energy + Delta-G solvation = -3442.904458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -49.99454 -41.68428 -40.13768 -38.64485 -36.44533 -34.55153 -33.76464 -32.02994 -28.81581 -28.21692 -26.58761 -25.67717 -24.29826 -22.85393 -21.89630 -20.44919 -19.45261 -18.60154 -17.63394 -17.31267 -17.00542 -16.86383 -16.82355 -16.77167 -16.12968 -15.63892 -15.06290 -14.86227 -14.47940 -14.32928 -14.27886 -13.55825 -13.44737 -13.10200 -13.06768 -13.03508 -12.95784 -12.83743 -12.43129 -12.31514 -11.96277 -11.83977 -11.63956 -11.17802 -10.98893 -10.66324 -10.55981 -10.10791 -9.74065 -8.42136 -6.54864 -0.41970 0.05929 1.29779 1.34859 1.49285 1.67694 1.93546 2.31920 2.58377 2.94900 3.18927 3.59805 3.63562 3.83922 3.87811 3.89993 3.99097 4.16095 4.19653 4.34224 4.57274 4.61603 4.63074 4.78704 4.85325 4.88816 5.00331 5.09107 5.12523 5.13927 5.21030 5.25882 5.27856 5.52530 5.65103 5.73378 5.80982 6.25050 6.54616 7.02244 7.19896 8.72180 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020222 B = 0.006505 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.269459 B = 4303.064248 C = 4540.995402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 C 0.072 3.928 4 F -0.137 7.137 5 C -0.105 4.105 6 C -0.096 4.096 7 C -0.078 4.078 8 C -0.123 4.123 9 C 0.491 3.509 10 O -0.514 6.514 11 O -0.360 6.360 12 C 0.182 3.818 13 C -0.509 4.509 14 H 0.033 0.967 15 C 0.026 3.974 16 N -0.934 5.934 17 Si 0.939 3.061 18 H -0.284 1.284 19 H -0.294 1.294 20 H -0.209 1.209 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.141 4.141 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.179 0.821 28 H 0.185 0.815 29 H 0.150 0.850 30 H 0.269 0.731 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.047 11.019 -9.971 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C 0.052 3.948 4 F -0.116 7.116 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.096 4.096 8 C -0.124 4.124 9 C 0.337 3.663 10 O -0.404 6.404 11 O -0.278 6.278 12 C 0.148 3.852 13 C -0.546 4.546 14 H 0.051 0.949 15 C -0.174 4.174 16 N -0.573 5.573 17 Si 0.764 3.236 18 H -0.210 1.210 19 H -0.221 1.221 20 H -0.131 1.131 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.179 4.179 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.196 0.804 28 H 0.203 0.797 29 H 0.168 0.832 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.062 0.938 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.629 10.960 -9.833 18.763 hybrid contribution -0.646 0.123 0.906 1.119 sum 10.983 11.082 -8.927 17.976 Atomic orbital electron populations 1.20927 0.89885 1.03025 1.03570 1.20100 0.97716 0.91272 0.98735 1.17444 0.91071 0.79892 1.06354 1.91478 1.80744 1.45139 1.94211 1.21795 0.90736 1.01931 0.97832 1.21450 1.02523 0.89436 0.97896 1.21826 0.91605 1.01292 0.94867 1.19153 0.94996 0.89477 1.08783 1.21354 0.86165 0.85392 0.73428 1.90725 1.16054 1.88196 1.45455 1.86481 1.44580 1.15426 1.81341 1.21872 0.90700 0.79005 0.93669 1.20879 0.94086 1.48408 0.91255 0.94861 1.25898 1.03524 0.92760 0.95188 1.70061 1.39122 1.47722 1.00361 0.85842 0.80110 0.77673 0.80003 1.21021 1.22133 1.13073 1.23314 0.97818 0.95203 0.99143 1.22476 0.97420 0.94882 1.00338 1.23306 0.99747 0.98066 0.96769 0.90233 0.91180 0.90621 0.80364 0.79739 0.83201 0.92233 0.88151 0.91823 0.91251 0.88080 0.93821 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.60 71.24 0.61 -3.42 16 2 C -0.08 -2.51 5.92 -19.55 -0.12 -2.63 16 3 C 0.07 1.87 7.24 22.34 0.16 2.03 16 4 F -0.14 -3.55 16.36 44.97 0.74 -2.81 16 5 C -0.10 -1.94 10.02 22.37 0.22 -1.71 16 6 C -0.10 -1.72 10.03 22.22 0.22 -1.50 16 7 C -0.08 -2.07 9.61 22.54 0.22 -1.85 16 8 C -0.12 -4.31 5.87 -20.11 -0.12 -4.43 16 9 C 0.49 21.60 7.39 70.33 0.52 22.12 16 10 O -0.51 -25.42 11.84 19.93 0.24 -25.18 16 11 O -0.36 -16.00 6.43 -56.32 -0.36 -16.36 16 12 C 0.18 8.48 0.24 -11.01 0.00 8.47 16 13 C -0.51 -29.60 8.25 25.60 0.21 -29.39 16 14 H 0.03 2.21 8.05 -2.91 -0.02 2.19 16 15 C 0.03 1.55 5.47 84.65 0.46 2.02 16 16 N -0.93 -59.02 13.96 21.45 0.30 -58.72 16 17 Si 0.94 44.76 25.41 68.60 1.74 46.50 16 18 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.21 -8.67 5.59 99.48 0.56 -8.12 16 21 C -0.12 -4.48 5.95 31.12 0.19 -4.30 16 22 C -0.11 -4.03 7.81 31.12 0.24 -3.79 16 23 C -0.14 -5.83 5.97 31.12 0.19 -5.64 16 24 H 0.08 2.61 8.14 -2.39 -0.02 2.60 16 25 H 0.07 2.91 5.88 -2.38 -0.01 2.89 16 26 H 0.07 2.24 7.45 -2.39 -0.02 2.23 16 27 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 29 H 0.15 3.74 7.63 -2.91 -0.02 3.71 16 30 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 32 H 0.06 2.54 7.51 -2.39 -0.02 2.53 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.04 2.01 8.09 -2.38 -0.02 1.99 16 36 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -72.94 301.90 6.60 -66.34 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.94 Total: 14.26 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 3.01 Total: -24.02 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.30 Total: -58.72 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.13 Total: -41.55 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.74 Total: -2.81 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.74 Total: 46.50 kcal Total: -72.94 6.60 -66.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817735222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.380 kcal (2) G-P(sol) polarization free energy of solvation -72.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds