Wall clock time and date at job start Mon Mar 30 2020 23:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48500 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47441 * 299.99506 * 3 2 1 6 6 H 1.48499 * 109.47198 * 59.99844 * 3 2 1 7 7 C 1.38951 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99514 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00166 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99807 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.46895 * 180.02562 * 12 10 9 14 14 C 1.39669 * 119.99833 * 180.02562 * 13 12 10 15 15 C 1.38937 * 120.07255 * 359.97391 * 14 13 12 16 16 C 1.38082 * 119.92115 * 180.02562 * 15 14 13 17 17 C 1.38315 * 120.07931 * 359.72519 * 16 15 14 18 18 C 1.38271 * 120.14399 * 0.54850 * 17 16 15 19 19 C 1.50694 * 119.95861 * 179.72520 * 18 17 16 20 20 C 1.50706 * 109.47327 * 269.72764 * 19 18 17 21 21 O 1.20825 * 119.99859 * 359.97438 * 20 19 18 22 22 O 1.34224 * 120.00295 * 180.02562 * 20 19 18 23 23 C 1.38121 * 120.07345 * 359.45299 * 18 17 16 24 24 H 0.97000 * 119.99505 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00376 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47021 * 60.00081 * 12 10 9 27 27 H 1.08998 * 109.47036 * 299.99683 * 12 10 9 28 28 H 0.96997 * 120.00044 * 359.97438 * 13 12 10 29 29 H 1.07997 * 120.03916 * 0.02562 * 15 14 13 30 30 H 1.08004 * 119.96434 * 179.97438 * 16 15 14 31 31 H 1.07989 * 119.92896 * 180.29562 * 17 16 15 32 32 H 1.08997 * 109.46894 * 149.72963 * 19 18 17 33 33 H 1.09000 * 109.47644 * 29.73111 * 19 18 17 34 34 H 0.96700 * 117.00196 * 179.97438 * 22 20 19 35 35 H 1.08001 * 120.03528 * 180.24863 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1956 -5.9765 0.0016 14 6 1.7300 -7.2933 0.0017 15 6 0.3644 -7.5489 0.0018 16 6 -0.0925 -8.8519 0.0024 17 6 0.8076 -9.9021 -0.0029 18 6 2.1674 -9.6512 0.0027 19 6 3.1443 -10.7986 0.0031 20 6 3.4700 -11.1805 1.4241 21 8 2.9614 -10.5820 2.3423 22 8 4.3259 -12.1849 1.6698 23 6 2.6311 -8.3502 0.0021 24 1 -0.4849 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6166 -4.9209 -0.8886 27 1 0.6173 -4.9205 0.8914 28 1 3.1493 -5.7993 0.0012 29 1 -0.3390 -6.7294 0.0014 30 1 -1.1540 -9.0514 0.0029 31 1 0.4476 -10.9202 -0.0073 32 1 4.0574 -10.4985 -0.5108 33 1 2.7023 -11.6525 -0.5104 34 1 4.5039 -12.3930 2.5972 35 1 3.6933 -8.1550 0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819091218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:03 Heat of formation + Delta-G solvation = -106.673395 kcal Electronic energy + Delta-G solvation = -20127.451810 eV Core-core repulsion = 16703.948758 eV Total energy + Delta-G solvation = -3423.503053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53103 -39.31654 -38.28101 -36.33334 -35.25256 -34.01319 -32.54724 -31.41780 -30.04163 -27.92879 -26.66364 -24.40929 -22.83591 -22.04912 -20.38194 -19.34504 -18.27334 -18.09298 -17.28878 -16.64781 -16.33362 -15.91312 -15.39624 -15.22232 -14.78396 -14.50946 -14.13491 -13.68526 -13.48424 -13.44377 -13.11604 -12.84663 -12.44219 -12.20104 -11.92886 -11.68505 -11.65025 -11.33525 -11.16354 -10.90494 -10.75173 -10.42126 -10.33358 -9.87786 -9.65269 -8.71869 -8.63711 -8.11918 -7.15998 -6.53477 -3.95204 1.41936 1.77106 2.05290 2.93511 3.09125 3.21307 3.28000 3.65206 3.72250 4.05441 4.11882 4.48057 4.79549 4.85625 5.12025 5.14791 5.19293 5.20850 5.33953 5.48400 5.66326 5.72175 5.88355 5.89391 6.10455 6.10569 6.29443 6.47371 6.59319 6.71327 6.97832 7.44774 7.55852 7.71383 7.92059 8.10298 8.44101 9.03586 9.37625 9.85990 10.63657 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036893 B = 0.002881 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.770720 B = 9717.751256 C =10215.307187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.430 3.570 11 O -0.595 6.595 12 C 0.113 3.887 13 N -0.725 5.725 14 C 0.230 3.770 15 C -0.198 4.198 16 C -0.069 4.069 17 C -0.174 4.174 18 C -0.037 4.037 19 C -0.070 4.070 20 C 0.476 3.524 21 O -0.500 6.500 22 O -0.522 6.522 23 C -0.183 4.183 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.411 0.589 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.409 0.591 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -20.798 -0.593 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.186 5.186 10 C 0.215 3.785 11 O -0.481 6.481 12 C -0.016 4.016 13 N -0.355 5.355 14 C 0.124 3.876 15 C -0.221 4.221 16 C -0.088 4.088 17 C -0.194 4.194 18 C -0.038 4.038 19 C -0.107 4.107 20 C 0.317 3.683 21 O -0.386 6.386 22 O -0.335 6.335 23 C -0.206 4.206 24 H 0.083 0.917 25 H 0.229 0.771 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.249 0.751 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.268 0.732 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.289 -20.152 -0.746 20.206 hybrid contribution 0.168 0.862 0.686 1.114 sum 1.457 -19.289 -0.060 19.344 Atomic orbital electron populations 1.69619 1.06007 1.28404 1.49622 1.25319 0.95678 0.99926 0.96827 0.85758 0.79709 0.80804 0.77837 1.19134 1.20590 1.20595 1.19777 0.93487 0.82018 1.48040 0.87685 1.41806 1.09398 1.04510 1.62931 1.19748 0.88336 0.84965 0.85423 1.90504 1.13815 1.86790 1.56976 1.20946 0.92193 0.86489 1.01948 1.44520 1.09659 1.01069 1.80213 1.17787 0.92808 0.84481 0.92505 1.20729 0.93579 0.97469 1.10320 1.20787 0.99068 0.91985 0.96935 1.20586 0.92174 0.98649 1.07999 1.18822 0.93292 0.92217 0.99487 1.20255 1.01087 0.98827 0.90538 1.23465 0.75375 0.76543 0.92910 1.90782 1.49640 1.51373 1.46853 1.84524 1.61026 1.51599 1.36345 1.20331 0.98734 0.91089 1.10466 0.91659 0.77129 0.90617 0.90650 0.75096 0.85945 0.86253 0.86904 0.86817 0.86804 0.73228 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.84 13.05 55.50 0.72 -23.11 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 10 C 0.43 9.92 7.85 -10.98 -0.09 9.83 16 11 O -0.59 -15.67 15.24 5.55 0.08 -15.59 16 12 C 0.11 2.00 5.39 -5.19 -0.03 1.97 16 13 N -0.72 -12.40 5.70 -59.80 -0.34 -12.74 16 14 C 0.23 3.54 6.65 -83.79 -0.56 2.99 16 15 C -0.20 -2.78 9.31 -39.38 -0.37 -3.15 16 16 C -0.07 -0.85 10.04 -39.61 -0.40 -1.24 16 17 C -0.17 -2.05 9.70 -39.54 -0.38 -2.43 16 18 C -0.04 -0.45 4.37 -104.66 -0.46 -0.91 16 19 C -0.07 -0.60 5.94 -29.04 -0.17 -0.77 16 20 C 0.48 4.90 8.32 36.01 0.30 5.20 16 21 O -0.50 -7.25 16.79 -18.75 -0.31 -7.57 16 22 O -0.52 -3.90 13.42 -39.24 -0.53 -4.43 16 23 C -0.18 -2.55 9.55 -39.38 -0.38 -2.93 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.40 9.27 7.90 -40.82 -0.32 8.94 16 26 H 0.08 1.21 7.95 -51.93 -0.41 0.79 16 27 H 0.08 1.23 7.95 -51.93 -0.41 0.82 16 28 H 0.41 7.46 7.45 -40.82 -0.30 7.15 16 29 H 0.12 1.60 6.73 -52.49 -0.35 1.25 16 30 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.11 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.41 1.51 9.10 45.56 0.41 1.93 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -33.38 315.57 -6.48 -39.86 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -3.01 Total: 16.25 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.77 Total: 0.68 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.33 Total: -49.55 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.76 Total: -27.58 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.38 -6.48 -39.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819091218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.815 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds