Wall clock time and date at job start Mon Mar 30 2020 23:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48500 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47441 * 299.99506 * 3 2 1 6 6 H 1.48499 * 109.47198 * 59.99844 * 3 2 1 7 7 C 1.38951 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99514 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00166 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99807 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.46895 * 180.02562 * 12 10 9 14 14 C 1.39669 * 119.99833 * 180.02562 * 13 12 10 15 15 C 1.38937 * 120.07255 * 359.97391 * 14 13 12 16 16 C 1.38082 * 119.92115 * 180.02562 * 15 14 13 17 17 C 1.38315 * 120.07931 * 359.72519 * 16 15 14 18 18 C 1.38271 * 120.14399 * 0.54850 * 17 16 15 19 19 C 1.50694 * 119.95861 * 179.72520 * 18 17 16 20 20 C 1.50706 * 109.47327 * 269.72764 * 19 18 17 21 21 O 1.20825 * 119.99859 * 359.97438 * 20 19 18 22 22 O 1.34224 * 120.00295 * 180.02562 * 20 19 18 23 23 C 1.38121 * 120.07345 * 359.45299 * 18 17 16 24 24 H 0.97000 * 119.99505 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00376 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47021 * 60.00081 * 12 10 9 27 27 H 1.08998 * 109.47036 * 299.99683 * 12 10 9 28 28 H 0.96997 * 120.00044 * 359.97438 * 13 12 10 29 29 H 1.07997 * 120.03916 * 0.02562 * 15 14 13 30 30 H 1.08004 * 119.96434 * 179.97438 * 16 15 14 31 31 H 1.07989 * 119.92896 * 180.29562 * 17 16 15 32 32 H 1.08997 * 109.46894 * 149.72963 * 19 18 17 33 33 H 1.09000 * 109.47644 * 29.73111 * 19 18 17 34 34 H 0.96700 * 117.00196 * 179.97438 * 22 20 19 35 35 H 1.08001 * 120.03528 * 180.24863 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1956 -5.9765 0.0016 14 6 1.7300 -7.2933 0.0017 15 6 0.3644 -7.5489 0.0018 16 6 -0.0925 -8.8519 0.0024 17 6 0.8076 -9.9021 -0.0029 18 6 2.1674 -9.6512 0.0027 19 6 3.1443 -10.7986 0.0031 20 6 3.4700 -11.1805 1.4241 21 8 2.9614 -10.5820 2.3423 22 8 4.3259 -12.1849 1.6698 23 6 2.6311 -8.3502 0.0021 24 1 -0.4849 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6166 -4.9209 -0.8886 27 1 0.6173 -4.9205 0.8914 28 1 3.1493 -5.7993 0.0012 29 1 -0.3390 -6.7294 0.0014 30 1 -1.1540 -9.0514 0.0029 31 1 0.4476 -10.9202 -0.0073 32 1 4.0574 -10.4985 -0.5108 33 1 2.7023 -11.6525 -0.5104 34 1 4.5039 -12.3930 2.5972 35 1 3.6933 -8.1550 0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819091218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:03 Heat of formation + Delta-G solvation = -131.200973 kcal Electronic energy + Delta-G solvation = -20128.515406 eV Core-core repulsion = 16703.948758 eV Total energy + Delta-G solvation = -3424.566648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35628 -40.58565 -39.83009 -37.12607 -36.55818 -35.86935 -33.47352 -33.38684 -31.24405 -28.85046 -28.16053 -26.17361 -23.77084 -22.98858 -21.62319 -20.85804 -20.02403 -19.02989 -18.63379 -17.52683 -17.27721 -17.11144 -16.77484 -16.42023 -16.36354 -16.23277 -15.66897 -14.86860 -14.72973 -14.50942 -14.20135 -14.02834 -13.75177 -13.55875 -13.19638 -13.10786 -12.91834 -12.48354 -12.47384 -12.26312 -12.13146 -11.85980 -11.62826 -11.60221 -10.98225 -10.56538 -10.11692 -9.68724 -8.53723 -8.31480 -6.03620 0.45878 0.76280 1.28864 1.33094 1.40712 1.54610 1.89755 2.18827 2.26329 2.44693 3.08608 3.13865 3.15661 3.66590 4.03352 4.16883 4.28111 4.34273 4.43858 4.46843 4.49703 4.60167 4.63173 4.71755 4.95086 5.15273 5.35528 5.43973 5.62925 5.68300 5.74677 5.86140 6.00980 6.39898 6.50016 6.78636 7.02350 7.05740 7.42673 7.94783 8.63472 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036893 B = 0.002881 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.770720 B = 9717.751256 C =10215.307187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.081 0.919 9 N -0.560 5.560 10 C 0.430 3.570 11 O -0.631 6.631 12 C 0.130 3.870 13 N -0.737 5.737 14 C 0.204 3.796 15 C -0.212 4.212 16 C -0.073 4.073 17 C -0.173 4.173 18 C -0.040 4.040 19 C -0.069 4.069 20 C 0.483 3.517 21 O -0.551 6.551 22 O -0.513 6.513 23 C -0.199 4.199 24 H 0.280 0.720 25 H 0.400 0.600 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.402 0.598 29 H 0.127 0.873 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.426 0.574 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -22.459 -0.984 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.099 0.901 9 N -0.196 5.196 10 C 0.217 3.783 11 O -0.519 6.519 12 C 0.001 3.999 13 N -0.369 5.369 14 C 0.100 3.900 15 C -0.235 4.235 16 C -0.092 4.092 17 C -0.193 4.193 18 C -0.041 4.041 19 C -0.106 4.106 20 C 0.327 3.673 21 O -0.441 6.441 22 O -0.327 6.327 23 C -0.221 4.221 24 H 0.090 0.910 25 H 0.234 0.766 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.238 0.762 29 H 0.145 0.855 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.287 0.713 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.688 -21.876 -1.139 21.917 hybrid contribution 0.371 1.188 0.817 1.489 sum 1.059 -20.688 -0.321 20.718 Atomic orbital electron populations 1.69672 1.06872 1.29587 1.49361 1.26094 0.96574 1.02544 0.95774 0.84837 0.78013 0.76823 0.78457 1.19759 1.19381 1.19508 1.19727 0.92814 0.83761 1.50459 0.90095 1.41842 1.09568 1.04542 1.63632 1.20653 0.88170 0.86262 0.83222 1.90473 1.15759 1.87666 1.57987 1.20796 0.91737 0.83719 1.03613 1.44465 1.08868 1.01626 1.81897 1.18044 0.93831 0.83829 0.94252 1.20937 0.93100 0.98686 1.10757 1.21158 1.00702 0.91343 0.95960 1.21034 0.92052 0.99981 1.06212 1.19193 0.94422 0.92466 0.98041 1.20378 1.01417 0.98756 0.90043 1.23710 0.74621 0.76044 0.92952 1.90776 1.51746 1.53188 1.48391 1.84486 1.59864 1.50317 1.37999 1.20554 0.98808 0.91860 1.10912 0.91007 0.76552 0.88572 0.89069 0.76168 0.85497 0.83652 0.84083 0.84930 0.83449 0.71263 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.48 13.05 21.66 0.28 -48.20 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 3 Si 1.00 42.23 29.55 68.60 2.03 44.25 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.34 -18.97 9.68 84.04 0.81 -18.16 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.56 -28.38 5.29 -306.98 -1.62 -30.00 16 10 C 0.43 20.34 7.85 87.66 0.69 21.03 16 11 O -0.63 -34.48 15.24 -3.07 -0.05 -34.52 16 12 C 0.13 4.60 5.39 85.63 0.46 5.06 16 13 N -0.74 -25.68 5.70 -343.12 -1.96 -27.64 16 14 C 0.20 6.25 6.65 38.22 0.25 6.51 16 15 C -0.21 -5.74 9.31 22.40 0.21 -5.53 16 16 C -0.07 -1.63 10.04 22.25 0.22 -1.41 16 17 C -0.17 -3.60 9.70 22.30 0.22 -3.38 16 18 C -0.04 -0.89 4.37 -19.89 -0.09 -0.98 16 19 C -0.07 -0.99 5.94 29.10 0.17 -0.82 16 20 C 0.48 8.95 8.32 71.24 0.59 9.54 16 21 O -0.55 -15.46 16.79 21.97 0.37 -15.09 16 22 O -0.51 -6.35 13.42 -51.35 -0.69 -7.04 16 23 C -0.20 -5.45 9.55 22.40 0.21 -5.23 16 24 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 25 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 26 H 0.10 3.01 7.95 -2.39 -0.02 2.99 16 27 H 0.09 2.94 7.95 -2.39 -0.02 2.93 16 28 H 0.40 15.20 7.45 -92.71 -0.69 14.50 16 29 H 0.13 3.19 6.73 -2.91 -0.02 3.17 16 30 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.14 2.10 8.06 -2.92 -0.02 2.08 16 32 H 0.13 1.43 8.08 -2.39 -0.02 1.42 16 33 H 0.15 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.43 2.21 9.10 -74.06 -0.67 1.53 16 35 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -73.32 315.57 1.65 -71.66 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -0.93 Total: 39.96 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 4.23 Total: 6.61 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.30 Total: -105.84 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -0.37 Total: -56.65 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -73.32 1.65 -71.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819091218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.540 kcal (2) G-P(sol) polarization free energy of solvation -73.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds