Wall clock time and date at job start Mon Mar 30 2020 23:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86791 * 120.00358 * 2 1 4 4 H 1.48505 * 109.47168 * 269.99838 * 3 2 1 5 5 H 1.48501 * 109.47502 * 29.99978 * 3 2 1 6 6 H 1.48508 * 109.47199 * 150.00349 * 3 2 1 7 7 C 1.38655 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00372 * 180.02562 * 7 2 1 9 9 O 1.34837 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.35760 * 116.99569 * 185.05707 * 9 7 2 11 11 C 1.39026 * 119.98780 * 174.18323 * 10 9 7 12 12 C 1.38211 * 120.24424 * 179.72405 * 11 10 9 13 13 C 1.38028 * 120.22705 * 0.54918 * 12 11 10 14 14 C 1.39708 * 119.97949 * 359.72816 * 13 12 11 15 15 C 1.47504 * 120.11887 * 180.02562 * 14 13 12 16 16 N 1.29734 * 120.00538 * 359.97438 * 15 14 13 17 17 N 1.40100 * 120.00586 * 180.02562 * 16 15 14 18 18 C 1.46496 * 120.00179 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47366 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47571 * 179.97438 * 19 18 17 21 21 O 1.20829 * 119.99626 * 0.02562 * 20 19 18 22 22 O 1.34225 * 120.00244 * 180.02562 * 20 19 18 23 23 C 1.38566 * 119.99389 * 354.45910 * 10 9 7 24 24 H 0.97007 * 119.99382 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.87429 * 0.02562 * 11 10 9 26 26 H 1.07994 * 119.88901 * 180.28132 * 12 11 10 27 27 H 1.07998 * 120.00535 * 179.74644 * 13 12 11 28 28 H 1.08004 * 119.99526 * 179.97438 * 15 14 13 29 29 H 0.97002 * 119.99598 * 359.97438 * 17 16 15 30 30 H 1.08996 * 109.47459 * 299.99883 * 18 17 16 31 31 H 1.09009 * 109.47403 * 59.99840 * 18 17 16 32 32 H 1.09004 * 109.46871 * 300.00219 * 19 18 17 33 33 H 1.08998 * 109.47200 * 59.99888 * 19 18 17 34 34 H 0.96703 * 117.00284 * 180.02562 * 22 20 19 35 35 H 1.07996 * 120.11685 * 359.97220 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4399 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3344 -2.3685 -0.0005 10 6 2.0698 -3.5048 0.1056 11 6 1.4340 -4.7345 0.2337 12 6 2.1773 -5.8951 0.3364 13 6 3.5564 -5.8405 0.3238 14 6 4.2052 -4.6092 0.2012 15 6 5.6788 -4.5473 0.1867 16 7 6.3750 -5.6373 0.2885 17 7 7.7747 -5.5784 0.2754 18 6 8.5608 -6.8092 0.3908 19 6 10.0517 -6.4680 0.3491 20 6 10.8603 -7.7341 0.4686 21 8 10.3015 -8.8000 0.5756 22 8 12.2013 -7.6776 0.4561 23 6 3.4537 -3.4381 0.0918 24 1 -0.4849 0.8402 -0.0004 25 1 0.3552 -4.7834 0.2482 26 1 1.6774 -6.8477 0.4312 27 1 4.1338 -6.7492 0.4083 28 1 6.1783 -3.5944 0.0915 29 1 8.2233 -4.7226 0.1898 30 1 8.3269 -7.3025 1.3342 31 1 8.3175 -7.4749 -0.4374 32 1 10.2853 -5.9749 -0.5945 33 1 10.2954 -5.8023 1.1770 34 1 12.6768 -8.5159 0.5351 35 1 3.9493 -2.4833 -0.0037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821324847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:33 Heat of formation + Delta-G solvation = -51.215327 kcal Electronic energy + Delta-G solvation = -19561.513639 eV Core-core repulsion = 16140.415429 eV Total energy + Delta-G solvation = -3421.098210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70419 -38.99143 -37.30590 -36.67703 -36.13676 -33.98022 -32.25521 -30.96876 -29.16991 -28.31506 -25.37511 -24.49804 -22.76433 -21.59088 -21.42280 -19.93438 -18.57777 -18.02811 -17.09664 -16.92487 -16.72929 -16.15946 -15.22279 -15.01510 -14.79122 -14.34370 -14.20131 -13.64522 -13.61593 -13.41937 -12.84343 -12.66436 -12.41218 -12.31346 -12.01128 -11.80381 -11.66969 -11.16590 -11.09449 -10.80466 -10.75093 -10.71265 -10.44722 -9.89659 -9.38334 -8.88540 -8.63853 -7.51820 -7.13344 -6.42830 -4.02416 1.51585 1.72734 2.27339 2.38032 3.04835 3.13496 3.16617 3.17656 3.18887 3.97574 4.18502 4.52200 4.66915 4.78900 4.98759 5.10169 5.13003 5.29869 5.40116 5.51714 5.67681 5.81273 6.00390 6.01684 6.09632 6.23368 6.47238 6.71381 6.84303 7.04106 7.10674 7.30308 7.36255 7.40655 7.42780 7.80227 8.01291 8.50612 9.02781 9.73251 10.75357 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.002791 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.597542 B =10031.359068 C =11196.693727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.149 3.851 11 C -0.178 4.178 12 C -0.084 4.084 13 C -0.174 4.174 14 C -0.007 4.007 15 C 0.086 3.914 16 N -0.231 5.231 17 N -0.674 5.674 18 C 0.173 3.827 19 C -0.126 4.126 20 C 0.487 3.513 21 O -0.510 6.510 22 O -0.518 6.518 23 C -0.208 4.208 24 H 0.269 0.731 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.373 0.627 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.413 0.587 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.660 -9.883 0.599 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.096 3.904 11 C -0.199 4.199 12 C -0.103 4.103 13 C -0.195 4.195 14 C -0.010 4.010 15 C -0.125 4.125 16 N -0.037 5.037 17 N -0.413 5.413 18 C 0.048 3.952 19 C -0.165 4.165 20 C 0.328 3.672 21 O -0.397 6.397 22 O -0.330 6.330 23 C -0.230 4.230 24 H 0.079 0.921 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.210 0.790 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.272 0.728 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 18.970 -10.778 0.692 21.829 hybrid contribution 1.340 1.548 -0.079 2.049 sum 20.310 -9.230 0.613 22.318 Atomic orbital electron populations 1.70041 1.05925 1.27571 1.46323 1.25265 0.95825 0.98762 0.96669 0.85735 0.78908 0.80252 0.78647 1.19946 1.20309 1.19250 1.21286 0.91721 0.80875 1.52943 0.89138 1.84007 1.34012 1.11299 1.78983 1.19189 0.89904 0.88248 0.93071 1.20367 0.99747 0.90367 1.09398 1.20623 0.93613 0.96824 0.99194 1.20795 0.94012 0.96552 1.08114 1.18005 0.88506 0.93613 1.00867 1.24120 0.93895 0.93737 1.00791 1.74217 0.90996 1.27355 1.11085 1.47756 0.99769 1.07194 1.86568 1.20573 0.85539 0.86257 1.02843 1.21419 0.94161 0.94295 1.06631 1.23060 0.80905 0.91241 0.71985 1.90783 1.71935 1.31971 1.45018 1.84513 1.20772 1.42467 1.85234 1.21172 0.93654 0.97775 1.10375 0.92079 0.86420 0.86759 0.86585 0.87619 0.78955 0.91519 0.91525 0.86896 0.86903 0.72763 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.39 -10.74 9.48 30.89 0.29 -10.44 16 8 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 9 O -0.18 -5.03 9.76 0.00 0.00 -5.03 16 10 C 0.15 3.54 6.64 -39.17 -0.26 3.28 16 11 C -0.18 -3.72 9.98 -39.30 -0.39 -4.11 16 12 C -0.08 -1.52 10.02 -39.67 -0.40 -1.91 16 13 C -0.17 -3.14 9.58 -39.11 -0.37 -3.52 16 14 C -0.01 -0.14 5.87 -105.07 -0.62 -0.76 16 15 C 0.09 1.36 10.75 -14.66 -0.16 1.21 16 16 N -0.23 -3.53 10.61 32.16 0.34 -3.19 16 17 N -0.67 -7.82 6.63 -10.61 -0.07 -7.89 16 18 C 0.17 1.69 5.96 -4.04 -0.02 1.67 16 19 C -0.13 -0.78 5.93 -27.88 -0.17 -0.94 16 20 C 0.49 3.69 8.33 36.01 0.30 3.99 16 21 O -0.51 -5.71 16.74 -18.75 -0.31 -6.02 16 22 O -0.52 -2.73 13.42 -39.25 -0.53 -3.26 16 23 C -0.21 -4.40 8.90 -38.96 -0.35 -4.75 16 24 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 26 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.12 1.95 7.55 -52.49 -0.40 1.56 16 28 H 0.11 1.45 8.02 -52.48 -0.42 1.03 16 29 H 0.37 3.48 8.43 -182.60 -1.54 1.94 16 30 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.07 0.73 8.10 -51.92 -0.42 0.31 16 32 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.41 0.57 9.10 45.56 0.41 0.98 16 35 H 0.13 2.69 5.63 -52.49 -0.30 2.40 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -33.80 319.49 -6.44 -40.24 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.18 Total: 4.85 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.24 Total: -15.34 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 1.03 Total: -35.41 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.84 Total: -14.31 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.80 -6.44 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.979 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds