Wall clock time and date at job start Mon Mar 30 2020 23:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86791 * 120.00358 * 2 1 4 4 H 1.48505 * 109.47168 * 269.99838 * 3 2 1 5 5 H 1.48501 * 109.47502 * 29.99978 * 3 2 1 6 6 H 1.48508 * 109.47199 * 150.00349 * 3 2 1 7 7 C 1.38655 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00372 * 180.02562 * 7 2 1 9 9 O 1.34837 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.35760 * 116.99569 * 185.05707 * 9 7 2 11 11 C 1.39026 * 119.98780 * 174.18323 * 10 9 7 12 12 C 1.38211 * 120.24424 * 179.72405 * 11 10 9 13 13 C 1.38028 * 120.22705 * 0.54918 * 12 11 10 14 14 C 1.39708 * 119.97949 * 359.72816 * 13 12 11 15 15 C 1.47504 * 120.11887 * 180.02562 * 14 13 12 16 16 N 1.29734 * 120.00538 * 359.97438 * 15 14 13 17 17 N 1.40100 * 120.00586 * 180.02562 * 16 15 14 18 18 C 1.46496 * 120.00179 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47366 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47571 * 179.97438 * 19 18 17 21 21 O 1.20829 * 119.99626 * 0.02562 * 20 19 18 22 22 O 1.34225 * 120.00244 * 180.02562 * 20 19 18 23 23 C 1.38566 * 119.99389 * 354.45910 * 10 9 7 24 24 H 0.97007 * 119.99382 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.87429 * 0.02562 * 11 10 9 26 26 H 1.07994 * 119.88901 * 180.28132 * 12 11 10 27 27 H 1.07998 * 120.00535 * 179.74644 * 13 12 11 28 28 H 1.08004 * 119.99526 * 179.97438 * 15 14 13 29 29 H 0.97002 * 119.99598 * 359.97438 * 17 16 15 30 30 H 1.08996 * 109.47459 * 299.99883 * 18 17 16 31 31 H 1.09009 * 109.47403 * 59.99840 * 18 17 16 32 32 H 1.09004 * 109.46871 * 300.00219 * 19 18 17 33 33 H 1.08998 * 109.47200 * 59.99888 * 19 18 17 34 34 H 0.96703 * 117.00284 * 180.02562 * 22 20 19 35 35 H 1.07996 * 120.11685 * 359.97220 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4399 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3344 -2.3685 -0.0005 10 6 2.0698 -3.5048 0.1056 11 6 1.4340 -4.7345 0.2337 12 6 2.1773 -5.8951 0.3364 13 6 3.5564 -5.8405 0.3238 14 6 4.2052 -4.6092 0.2012 15 6 5.6788 -4.5473 0.1867 16 7 6.3750 -5.6373 0.2885 17 7 7.7747 -5.5784 0.2754 18 6 8.5608 -6.8092 0.3908 19 6 10.0517 -6.4680 0.3491 20 6 10.8603 -7.7341 0.4686 21 8 10.3015 -8.8000 0.5756 22 8 12.2013 -7.6776 0.4561 23 6 3.4537 -3.4381 0.0918 24 1 -0.4849 0.8402 -0.0004 25 1 0.3552 -4.7834 0.2482 26 1 1.6774 -6.8477 0.4312 27 1 4.1338 -6.7492 0.4083 28 1 6.1783 -3.5944 0.0915 29 1 8.2233 -4.7226 0.1898 30 1 8.3269 -7.3025 1.3342 31 1 8.3175 -7.4749 -0.4374 32 1 10.2853 -5.9749 -0.5945 33 1 10.2954 -5.8023 1.1770 34 1 12.6768 -8.5159 0.5351 35 1 3.9493 -2.4833 -0.0037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821324847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:32 Heat of formation + Delta-G solvation = -75.598961 kcal Electronic energy + Delta-G solvation = -19562.570993 eV Core-core repulsion = 16140.415429 eV Total energy + Delta-G solvation = -3422.155564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29057 -40.69219 -38.63398 -37.68949 -37.12075 -34.99850 -34.18274 -32.23356 -30.64985 -29.58544 -27.28092 -25.49126 -24.00270 -23.17632 -22.12771 -21.31507 -19.79593 -19.13485 -18.62800 -17.92152 -17.31772 -17.15627 -16.70273 -16.50532 -15.95062 -15.73964 -15.56792 -15.43935 -14.91377 -14.26331 -14.23624 -13.92264 -13.84759 -13.49337 -13.03272 -12.99618 -12.64756 -12.55175 -12.40957 -12.28134 -12.10159 -12.07869 -11.73447 -11.29699 -11.01019 -10.76558 -10.02537 -9.07246 -8.53671 -8.41313 -6.09474 0.06600 0.77751 1.16954 1.39186 1.47338 1.55602 1.56521 1.70057 2.22152 2.44438 2.93907 3.27600 3.54001 3.57315 3.89393 4.01378 4.13188 4.31892 4.36892 4.47200 4.52939 4.57010 4.73135 4.79767 4.85511 5.10127 5.17221 5.20048 5.29204 5.59903 5.71877 5.73306 5.82407 6.07460 6.17487 6.22580 6.95819 7.03574 7.43330 7.84713 8.81973 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.002791 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.597542 B =10031.359068 C =11196.693727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.017 2.983 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.411 4.411 8 H 0.105 0.895 9 O -0.231 6.231 10 C 0.113 3.887 11 C -0.194 4.194 12 C -0.072 4.072 13 C -0.165 4.165 14 C -0.002 4.002 15 C 0.068 3.932 16 N -0.236 5.236 17 N -0.660 5.660 18 C 0.171 3.829 19 C -0.116 4.116 20 C 0.493 3.507 21 O -0.554 6.554 22 O -0.511 6.511 23 C -0.215 4.215 24 H 0.271 0.729 25 H 0.117 0.883 26 H 0.154 0.846 27 H 0.137 0.863 28 H 0.127 0.873 29 H 0.390 0.610 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.430 0.570 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.192 -10.548 0.722 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.174 1.174 7 C -0.487 4.487 8 H 0.122 0.878 9 O -0.138 6.138 10 C 0.063 3.937 11 C -0.214 4.214 12 C -0.089 4.089 13 C -0.186 4.186 14 C -0.004 4.004 15 C -0.143 4.143 16 N -0.043 5.043 17 N -0.400 5.400 18 C 0.046 3.954 19 C -0.154 4.154 20 C 0.337 3.663 21 O -0.445 6.445 22 O -0.325 6.325 23 C -0.237 4.237 24 H 0.080 0.920 25 H 0.135 0.865 26 H 0.171 0.829 27 H 0.155 0.845 28 H 0.144 0.856 29 H 0.229 0.771 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.292 0.708 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.572 -11.488 0.815 25.341 hybrid contribution 0.507 1.359 -0.095 1.453 sum 23.079 -10.130 0.719 25.215 Atomic orbital electron populations 1.70196 1.08053 1.28648 1.49193 1.26575 0.96823 1.02738 0.96053 0.84599 0.77909 0.74636 0.79162 1.18916 1.19961 1.17363 1.21831 0.92606 0.81373 1.52878 0.87790 1.83973 1.35692 1.12463 1.81698 1.19727 0.91250 0.88083 0.94649 1.20605 1.00191 0.90549 1.10073 1.21017 0.93692 0.97273 0.96956 1.21168 0.94243 0.97098 1.06075 1.18225 0.90361 0.92806 0.98999 1.23851 0.92444 0.94874 1.03147 1.74046 0.93288 1.27737 1.09218 1.47802 0.98371 1.08743 1.85102 1.20620 0.87752 0.85329 1.01651 1.21346 0.91169 0.94045 1.08861 1.23240 0.81464 0.90908 0.70703 1.90781 1.72807 1.33604 1.47294 1.84474 1.19686 1.43817 1.84488 1.21197 0.92831 0.98821 1.10817 0.91992 0.86523 0.82870 0.84546 0.85577 0.77118 0.92789 0.92778 0.84562 0.84584 0.70758 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.28 13.67 21.61 0.30 -55.99 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 42.02 29.55 68.60 2.03 44.05 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.41 -23.43 9.48 67.92 0.64 -22.79 16 8 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 9 O -0.23 -13.73 9.76 -22.93 -0.22 -13.96 16 10 C 0.11 5.56 6.64 22.54 0.15 5.71 16 11 C -0.19 -8.20 9.98 22.45 0.22 -7.98 16 12 C -0.07 -2.44 10.02 22.21 0.22 -2.22 16 13 C -0.17 -5.59 9.58 22.58 0.22 -5.37 16 14 C 0.00 -0.06 5.87 -20.16 -0.12 -0.17 16 15 C 0.07 1.99 10.75 87.45 0.94 2.93 16 16 N -0.24 -6.53 10.61 -52.16 -0.55 -7.09 16 17 N -0.66 -13.14 6.63 -187.49 -1.24 -14.39 16 18 C 0.17 2.91 5.96 86.38 0.51 3.42 16 19 C -0.12 -1.02 5.93 29.85 0.18 -0.84 16 20 C 0.49 6.23 8.33 71.24 0.59 6.82 16 21 O -0.55 -11.69 16.74 21.96 0.37 -11.32 16 22 O -0.51 -3.86 13.42 -51.37 -0.69 -4.55 16 23 C -0.21 -9.19 8.90 22.67 0.20 -8.98 16 24 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 25 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 26 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 27 H 0.14 4.12 7.55 -2.91 -0.02 4.10 16 28 H 0.13 3.13 8.02 -2.91 -0.02 3.10 16 29 H 0.39 5.72 8.43 -213.32 -1.80 3.92 16 30 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 31 H 0.05 1.08 8.10 -2.38 -0.02 1.06 16 32 H 0.14 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.43 0.07 9.10 -74.06 -0.67 -0.61 16 35 H 0.13 5.39 5.63 -2.91 -0.02 5.37 16 Total: -1.00 -77.46 319.49 2.89 -74.57 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -1.32 Total: 19.07 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 4.23 Total: -30.40 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.50 Total: -77.46 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.55 Total: -29.83 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -77.46 2.89 -74.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.031 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds