Wall clock time and date at job start Tue Mar 31 2020 01:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 115.55563 * 2 1 4 4 O 1.45205 * 109.46669 * 34.33116 * 3 2 1 5 5 C 1.34710 * 116.99961 * 179.97438 * 4 3 2 6 6 O 1.21466 * 119.99897 * 0.02562 * 5 4 3 7 7 C 1.47766 * 119.99915 * 180.02562 * 5 4 3 8 8 C 1.39972 * 120.03164 * 359.97438 * 7 5 4 9 9 C 1.38315 * 120.35352 * 179.74558 * 8 7 5 10 10 C 1.37762 * 120.41615 * 0.26157 * 9 8 7 11 11 C 1.40753 * 120.05544 * 0.02562 * 10 9 8 12 12 C 1.41437 * 120.18135 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99380 * 24.45616 * 12 11 10 14 14 C 1.39929 * 120.00231 * 204.45269 * 12 11 10 15 15 N 1.30830 * 119.99890 * 17.88304 * 14 12 11 16 16 Si 1.86798 * 120.00001 * 197.88273 * 14 12 11 17 17 H 1.48496 * 109.47089 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47213 * 120.00530 * 16 14 12 19 19 H 1.48506 * 109.47182 * 240.00162 * 16 14 12 20 20 C 1.39051 * 120.02856 * 180.28176 * 7 5 4 21 21 C 1.53003 * 117.49649 * 214.33250 * 2 1 3 22 22 C 1.52991 * 60.00197 * 252.48826 * 21 2 1 23 23 H 1.09003 * 117.49944 * 252.51178 * 22 21 2 24 24 F 1.39907 * 117.50418 * 107.48996 * 22 21 2 25 25 H 1.08997 * 109.47341 * 85.57703 * 1 2 3 26 26 H 1.09000 * 109.46952 * 205.58358 * 1 2 3 27 27 H 1.09003 * 109.46619 * 325.58024 * 1 2 3 28 28 H 1.09002 * 109.47359 * 274.33501 * 3 2 1 29 29 H 1.08992 * 109.47353 * 154.32970 * 3 2 1 30 30 H 1.07993 * 119.81885 * 0.02907 * 8 7 5 31 31 H 1.07997 * 119.79203 * 180.23385 * 9 8 7 32 32 H 1.08003 * 119.97402 * 180.02562 * 10 9 8 33 33 H 0.97000 * 119.99759 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.20801 * 359.97438 * 20 7 5 35 35 H 1.09007 * 117.49889 * 359.97438 * 21 2 1 36 36 H 1.09000 * 117.50107 * 144.97263 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 8 1.3788 2.3045 0.7721 5 6 1.8237 3.5721 0.8721 6 8 2.8605 3.8966 0.3289 7 6 1.0502 4.5679 1.6428 8 6 -0.1449 4.1948 2.2686 9 6 -0.8715 5.1201 2.9960 10 6 -0.4305 6.4204 3.1086 11 6 0.7658 6.8159 2.4813 12 6 1.2213 8.1500 2.5956 13 1 0.9159 8.7546 3.4369 14 6 2.0676 8.6866 1.6189 15 7 2.1618 8.1116 0.4475 16 14 3.0627 10.2238 1.9875 17 1 2.7799 10.6761 3.3734 18 1 4.5102 9.9208 1.8519 19 1 2.6898 11.2963 1.0304 20 6 1.5058 5.8779 1.7415 21 6 2.2364 -1.1207 -0.7655 22 6 2.2369 -1.1211 0.7645 23 1 3.1721 -0.8752 1.2675 24 9 1.4348 -2.0679 1.4106 25 1 -0.3634 0.0792 -1.0246 26 1 -0.3633 -0.9269 0.4438 27 1 -0.3633 0.8478 0.5809 28 1 2.2767 1.7416 -1.0247 29 1 3.1823 1.3085 0.4451 30 1 -0.4992 3.1779 2.1869 31 1 -1.7904 4.8215 3.4783 32 1 -1.0033 7.1369 3.6786 33 1 2.7481 8.4838 -0.2297 34 1 2.4251 6.1716 1.2566 35 1 1.6111 -1.8583 -1.2687 36 1 3.1711 -0.8746 -1.2693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822099614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:16 Heat of formation + Delta-G solvation = -113.558522 kcal Electronic energy + Delta-G solvation = -20750.084022 eV Core-core repulsion = 17306.362446 eV Total energy + Delta-G solvation = -3443.721576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -48.67019 -41.50437 -39.36386 -38.60705 -36.99862 -35.61936 -32.27315 -31.37454 -29.81069 -28.38856 -27.20994 -24.73833 -23.43162 -22.86012 -21.53954 -20.52184 -19.65236 -18.27558 -17.97485 -17.58579 -17.29493 -16.68770 -16.51174 -16.23660 -15.76086 -15.24600 -15.13392 -14.63478 -14.46489 -14.39828 -14.05864 -13.56841 -13.50966 -13.24611 -13.07395 -12.99611 -12.81634 -12.58712 -12.33239 -12.20524 -12.03703 -11.86978 -11.55010 -11.39413 -11.11815 -11.09873 -10.63508 -9.62482 -9.45198 -8.69490 -6.40415 0.12212 0.95793 1.38224 1.45020 1.54358 1.58877 1.79167 2.19184 2.42127 2.71593 3.01573 3.49221 3.50521 3.62325 3.80187 4.00501 4.05065 4.26718 4.31490 4.42648 4.61927 4.67566 4.77046 4.83589 4.88230 4.94537 5.04662 5.08092 5.12352 5.24586 5.27396 5.35886 5.44922 5.80945 5.88954 6.00582 6.22347 6.52419 6.80133 6.86138 6.88272 8.28301 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.003821 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.784418 B = 7325.341204 C = 7973.085766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.153 4.153 3 C 0.097 3.903 4 O -0.344 6.344 5 C 0.517 3.483 6 O -0.546 6.546 7 C -0.129 4.129 8 C -0.181 4.181 9 C -0.099 4.099 10 C -0.204 4.204 11 C 0.066 3.934 12 C -0.494 4.494 13 H 0.087 0.913 14 C 0.031 3.969 15 N -0.826 5.826 16 Si 0.984 3.016 17 H -0.251 1.251 18 H -0.270 1.270 19 H -0.264 1.264 20 C -0.123 4.123 21 C -0.148 4.148 22 C 0.015 3.985 23 H 0.148 0.852 24 F -0.193 7.193 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.115 0.885 33 H 0.288 0.712 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -13.778 -1.743 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C 0.024 3.976 4 O -0.260 6.260 5 C 0.365 3.635 6 O -0.438 6.438 7 C -0.130 4.130 8 C -0.200 4.200 9 C -0.117 4.117 10 C -0.224 4.224 11 C 0.064 3.936 12 C -0.523 4.523 13 H 0.105 0.895 14 C -0.184 4.184 15 N -0.452 5.452 16 Si 0.804 3.196 17 H -0.174 1.174 18 H -0.195 1.195 19 H -0.189 1.189 20 C -0.143 4.143 21 C -0.185 4.185 22 C -0.021 4.021 23 H 0.166 0.834 24 F -0.174 7.174 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.149 0.851 31 H 0.158 0.842 32 H 0.133 0.867 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.180 -13.737 -2.131 13.903 hybrid contribution 0.598 0.727 -0.154 0.954 sum 0.778 -13.010 -2.285 13.232 Atomic orbital electron populations 1.21216 0.90483 1.02816 1.02970 1.22087 0.97363 0.88969 1.06913 1.22603 0.93257 0.85933 0.95823 1.86550 1.52077 1.19648 1.67738 1.21642 0.82942 0.81594 0.77324 1.90740 1.25652 1.80677 1.46714 1.19083 0.98259 0.92067 1.03583 1.20941 0.95778 1.00124 1.03206 1.20957 0.99592 0.92726 0.98406 1.21504 0.96868 0.97050 1.06976 1.17900 0.91034 0.93577 0.91071 1.19894 1.26812 0.97395 1.08206 0.89477 1.26847 0.96024 1.02235 0.93285 1.69873 1.31146 1.40102 1.04040 0.85132 0.77784 0.76640 0.80042 1.17445 1.19476 1.18918 1.21473 1.00305 0.90600 1.01929 1.23979 1.03891 0.98088 0.92533 1.22731 0.95165 0.91026 0.93167 0.83449 1.92758 1.75817 1.65782 1.83017 0.90816 0.91387 0.91982 0.90306 0.90333 0.85109 0.84228 0.86710 0.90127 0.87568 0.85703 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.72 71.98 0.70 -1.91 16 2 C -0.15 -3.25 2.59 -52.18 -0.14 -3.39 16 3 C 0.10 2.65 5.60 71.98 0.40 3.06 16 4 O -0.34 -12.26 8.02 -56.19 -0.45 -12.71 16 5 C 0.52 23.02 7.90 70.34 0.56 23.57 16 6 O -0.55 -26.83 16.12 19.94 0.32 -26.51 16 7 C -0.13 -6.19 5.87 -20.14 -0.12 -6.31 16 8 C -0.18 -7.58 9.62 22.71 0.22 -7.36 16 9 C -0.10 -3.99 10.01 22.18 0.22 -3.77 16 10 C -0.20 -9.41 9.78 22.77 0.22 -9.18 16 11 C 0.07 3.54 5.57 -21.32 -0.12 3.42 16 12 C -0.49 -26.18 9.05 23.47 0.21 -25.97 16 13 H 0.09 4.35 7.91 -2.91 -0.02 4.32 16 14 C 0.03 1.58 5.14 85.25 0.44 2.02 16 15 N -0.83 -44.69 10.96 21.82 0.24 -44.45 16 16 Si 0.98 38.41 29.60 68.60 2.03 40.44 16 17 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 18 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 20 C -0.12 -6.72 8.24 23.02 0.19 -6.53 16 21 C -0.15 -2.13 9.96 30.59 0.30 -1.83 16 22 C 0.01 0.28 7.48 30.59 0.23 0.51 16 23 H 0.15 2.28 8.05 -2.39 -0.02 2.26 16 24 F -0.19 -4.46 16.50 44.97 0.74 -3.72 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.42 7.10 -2.39 -0.02 1.40 16 27 H 0.06 1.61 6.87 -2.39 -0.02 1.60 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 2.01 7.89 -2.39 -0.02 2.00 16 30 H 0.13 4.72 7.59 -2.91 -0.02 4.70 16 31 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 33 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 34 H 0.11 6.34 5.74 -2.91 -0.02 6.32 16 35 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -63.73 317.17 7.30 -56.43 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 1.09 Total: 24.21 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 3.32 Total: -33.68 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.24 Total: -44.45 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.13 Total: -39.23 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.74 Total: -3.72 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -63.73 7.30 -56.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822099614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.124 kcal (2) G-P(sol) polarization free energy of solvation -63.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds