Wall clock time and date at job start Tue Mar 31 2020 01:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 115.54584 * 2 1 4 4 O 1.45194 * 109.47177 * 325.66876 * 3 2 1 5 5 C 1.34709 * 116.99921 * 180.02562 * 4 3 2 6 6 O 1.21461 * 119.99684 * 0.02562 * 5 4 3 7 7 C 1.47771 * 119.99791 * 179.97438 * 5 4 3 8 8 C 1.39970 * 120.03231 * 0.29638 * 7 5 4 9 9 C 1.38319 * 120.35076 * 180.28058 * 8 7 5 10 10 C 1.37758 * 120.41849 * 359.43936 * 9 8 7 11 11 C 1.40760 * 120.05198 * 0.26284 * 10 9 8 12 12 C 1.41432 * 120.17604 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00025 * 334.94857 * 12 11 10 14 14 C 1.39940 * 120.00201 * 154.94631 * 12 11 10 15 15 N 1.30828 * 119.99858 * 342.59133 * 14 12 11 16 16 Si 1.86792 * 120.00219 * 162.59105 * 14 12 11 17 17 H 1.48495 * 109.47471 * 60.00188 * 16 14 12 18 18 H 1.48499 * 109.47234 * 180.02562 * 16 14 12 19 19 H 1.48510 * 109.46960 * 299.99803 * 16 14 12 20 20 C 1.39053 * 120.02634 * 179.97438 * 7 5 4 21 21 C 1.52995 * 117.49796 * 145.66826 * 2 1 3 22 22 C 1.52995 * 60.00002 * 107.51149 * 21 2 1 23 23 H 1.08999 * 117.50093 * 252.50723 * 22 21 2 24 24 F 1.39904 * 117.49908 * 107.48211 * 22 21 2 25 25 H 1.09000 * 109.47693 * 34.42248 * 1 2 3 26 26 H 1.09002 * 109.47053 * 154.41974 * 1 2 3 27 27 H 1.09001 * 109.47347 * 274.41645 * 1 2 3 28 28 H 1.08997 * 109.46854 * 205.67018 * 3 2 1 29 29 H 1.08993 * 109.47038 * 85.67109 * 3 2 1 30 30 H 1.08001 * 119.82530 * 359.97438 * 8 7 5 31 31 H 1.07994 * 119.79028 * 179.72057 * 9 8 7 32 32 H 1.07999 * 119.97948 * 180.28002 * 10 9 8 33 33 H 0.97000 * 120.00103 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.20648 * 359.97438 * 20 7 5 35 35 H 1.09000 * 117.49557 * 215.00396 * 21 2 1 36 36 H 1.09006 * 117.50210 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 8 1.3786 2.3046 -0.7720 5 6 1.8233 3.5722 -0.8720 6 8 2.8605 3.8965 -0.3295 7 6 1.0498 4.5679 -1.6426 8 6 -0.1482 4.1962 -2.2637 9 6 -0.8746 5.1214 -2.9915 10 6 -0.4338 6.4217 -3.1040 11 6 0.7654 6.8159 -2.4812 12 6 1.2206 8.1500 -2.5955 13 1 0.9196 8.7529 -3.4394 14 6 2.0611 8.6890 -1.6150 15 7 2.1562 8.1109 -0.4452 16 14 3.0473 10.2337 -1.9763 17 1 2.1211 11.3466 -2.3059 18 1 3.8534 10.5968 -0.7832 19 1 3.9522 9.9853 -3.1274 20 6 1.5080 5.8768 -1.7457 21 6 2.2364 -1.1207 0.7654 22 6 2.2368 -1.1210 -0.7646 23 1 1.6119 -1.8587 -1.2679 24 9 3.4371 -0.8052 -1.4103 25 1 -0.3634 0.8477 -0.5809 26 1 -0.3633 -0.9270 -0.4437 27 1 -0.3634 0.0791 1.0246 28 1 3.1821 1.3088 -0.4452 29 1 2.2765 1.7417 1.0247 30 1 -0.5048 3.1803 -2.1784 31 1 -1.7954 4.8236 -3.4708 32 1 -1.0089 7.1394 -3.6702 33 1 2.7391 8.4843 0.2344 34 1 2.4289 6.1696 -1.2635 35 1 3.1713 -0.8745 1.2689 36 1 1.6112 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822099620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:19 Heat of formation + Delta-G solvation = -100.302588 kcal Electronic energy + Delta-G solvation = -20846.035187 eV Core-core repulsion = 17402.888432 eV Total energy + Delta-G solvation = -3443.146755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.75819 -39.83231 -37.92942 -37.17233 -35.47285 -33.75721 -30.44559 -29.52957 -28.76691 -27.22001 -25.34658 -23.06787 -22.62625 -21.00551 -19.81650 -19.54808 -17.85653 -16.97564 -16.30142 -16.28939 -15.76949 -15.34181 -14.90470 -14.74997 -14.56794 -13.75094 -13.56238 -13.20018 -13.14107 -12.83507 -12.70446 -12.61557 -12.25243 -12.06455 -11.71007 -11.28115 -11.19467 -11.12431 -10.78450 -10.54990 -10.39905 -10.36292 -10.19960 -9.75102 -9.72822 -9.48595 -9.24811 -7.75745 -7.56827 -6.83774 -4.45327 1.97313 2.77746 2.99025 3.05952 3.07598 3.13988 3.33100 3.59658 3.85797 3.89565 4.34919 4.46645 4.57130 4.76484 4.83533 5.35105 5.35844 5.42860 5.52723 5.55030 5.68001 5.78058 5.80882 5.90058 6.10330 6.22828 6.39179 6.62270 6.91546 6.93830 6.98750 7.15763 7.29556 7.66565 7.73714 7.89375 8.08935 8.42590 8.54795 8.75641 8.77551 10.11713 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.004015 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.609202 B = 6972.492343 C = 7578.022250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.134 4.134 3 C 0.099 3.901 4 O -0.350 6.350 5 C 0.512 3.488 6 O -0.518 6.518 7 C -0.114 4.114 8 C -0.194 4.194 9 C -0.104 4.104 10 C -0.202 4.202 11 C 0.096 3.904 12 C -0.461 4.461 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.788 5.788 16 Si 0.912 3.088 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.089 4.089 21 C -0.179 4.179 22 C 0.023 3.977 23 H 0.135 0.865 24 F -0.181 7.181 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.285 0.715 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -13.830 1.956 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.134 4.134 3 C 0.025 3.975 4 O -0.267 6.267 5 C 0.359 3.641 6 O -0.407 6.407 7 C -0.115 4.115 8 C -0.213 4.213 9 C -0.122 4.122 10 C -0.222 4.222 11 C 0.094 3.906 12 C -0.490 4.490 13 H 0.100 0.900 14 C -0.145 4.145 15 N -0.412 5.412 16 Si 0.736 3.264 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.108 4.108 21 C -0.216 4.216 22 C -0.013 4.013 23 H 0.152 0.848 24 F -0.161 7.161 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.126 0.874 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.390 -13.719 2.363 13.990 hybrid contribution 0.733 0.638 0.083 0.975 sum -0.657 -13.081 2.445 13.324 Atomic orbital electron populations 1.21285 0.89898 1.03173 1.02783 1.22141 0.97098 0.90278 1.03928 1.22186 0.93547 0.85593 0.96185 1.86542 1.51690 1.20958 1.67550 1.21890 0.83633 0.80559 0.77989 1.90763 1.24472 1.79879 1.45613 1.18824 0.97160 0.92277 1.03271 1.20549 0.97067 0.98734 1.04973 1.20505 0.98481 0.93856 0.99337 1.21191 0.97611 0.95580 1.07777 1.17531 0.89803 0.93099 0.90167 1.19544 1.25387 0.96915 1.07160 0.89954 1.25962 0.95480 0.99153 0.93950 1.69767 1.30193 1.38294 1.02959 0.86301 0.80024 0.81007 0.79066 1.18915 1.20224 1.18693 1.21659 1.00342 0.89050 0.99791 1.23828 1.03464 1.00616 0.93716 1.22475 0.85322 1.01807 0.91702 0.84778 1.92806 1.46991 1.93776 1.82555 0.89855 0.92218 0.91635 0.90722 0.90665 0.87901 0.88530 0.88335 0.90350 0.84719 0.87422 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.75 37.16 0.36 -0.83 16 2 C -0.13 -1.57 2.59 -154.51 -0.40 -1.97 16 3 C 0.10 1.56 5.57 37.16 0.21 1.76 16 4 O -0.35 -6.64 8.02 -40.52 -0.33 -6.96 16 5 C 0.51 11.69 7.90 34.63 0.27 11.96 16 6 O -0.52 -12.92 16.12 -19.24 -0.31 -13.23 16 7 C -0.11 -2.76 5.87 -105.05 -0.62 -3.38 16 8 C -0.19 -4.24 9.62 -38.90 -0.37 -4.62 16 9 C -0.10 -2.22 10.01 -39.73 -0.40 -2.62 16 10 C -0.20 -4.75 9.78 -38.80 -0.38 -5.13 16 11 C 0.10 2.53 5.57 -106.87 -0.59 1.94 16 12 C -0.46 -11.99 9.05 -37.73 -0.34 -12.33 16 13 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 14 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 15 N -0.79 -20.69 10.97 55.55 0.61 -20.08 16 16 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 17 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.09 -2.37 8.24 -38.42 -0.32 -2.69 16 21 C -0.18 -1.59 9.96 -26.74 -0.27 -1.85 16 22 C 0.02 0.24 7.48 -26.74 -0.20 0.04 16 23 H 0.13 1.05 8.05 -51.93 -0.42 0.63 16 24 F -0.18 -2.51 16.50 2.25 0.04 -2.47 16 25 H 0.08 1.04 6.87 -51.93 -0.36 0.69 16 26 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.24 7.09 -51.93 -0.37 0.87 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 2.00 7.59 -52.49 -0.40 1.60 16 31 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 34 H 0.14 3.84 5.76 -52.49 -0.30 3.54 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 317.19 15.07 4.78 4.78 Total: -1.00 -29.20 317.19 -7.71 -36.91 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.34 Total: 5.41 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.13 Total: -17.95 kcal Atomic # 7 Polarization: -20.69 SS G_CDS: 0.61 Total: -20.08 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.64 Total: -20.19 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.20 -7.71 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822099620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.395 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds