Wall clock time and date at job start Tue Mar 31 2020 01:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 115.54584 * 2 1 4 4 O 1.45194 * 109.47177 * 325.66876 * 3 2 1 5 5 C 1.34709 * 116.99921 * 180.02562 * 4 3 2 6 6 O 1.21461 * 119.99684 * 0.02562 * 5 4 3 7 7 C 1.47771 * 119.99791 * 179.97438 * 5 4 3 8 8 C 1.39970 * 120.03231 * 0.29638 * 7 5 4 9 9 C 1.38319 * 120.35076 * 180.28058 * 8 7 5 10 10 C 1.37758 * 120.41849 * 359.43936 * 9 8 7 11 11 C 1.40760 * 120.05198 * 0.26284 * 10 9 8 12 12 C 1.41432 * 120.17604 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00025 * 334.94857 * 12 11 10 14 14 C 1.39940 * 120.00201 * 154.94631 * 12 11 10 15 15 N 1.30828 * 119.99858 * 342.59133 * 14 12 11 16 16 Si 1.86792 * 120.00219 * 162.59105 * 14 12 11 17 17 H 1.48495 * 109.47471 * 60.00188 * 16 14 12 18 18 H 1.48499 * 109.47234 * 180.02562 * 16 14 12 19 19 H 1.48510 * 109.46960 * 299.99803 * 16 14 12 20 20 C 1.39053 * 120.02634 * 179.97438 * 7 5 4 21 21 C 1.52995 * 117.49796 * 145.66826 * 2 1 3 22 22 C 1.52995 * 60.00002 * 107.51149 * 21 2 1 23 23 H 1.08999 * 117.50093 * 252.50723 * 22 21 2 24 24 F 1.39904 * 117.49908 * 107.48211 * 22 21 2 25 25 H 1.09000 * 109.47693 * 34.42248 * 1 2 3 26 26 H 1.09002 * 109.47053 * 154.41974 * 1 2 3 27 27 H 1.09001 * 109.47347 * 274.41645 * 1 2 3 28 28 H 1.08997 * 109.46854 * 205.67018 * 3 2 1 29 29 H 1.08993 * 109.47038 * 85.67109 * 3 2 1 30 30 H 1.08001 * 119.82530 * 359.97438 * 8 7 5 31 31 H 1.07994 * 119.79028 * 179.72057 * 9 8 7 32 32 H 1.07999 * 119.97948 * 180.28002 * 10 9 8 33 33 H 0.97000 * 120.00103 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.20648 * 359.97438 * 20 7 5 35 35 H 1.09000 * 117.49557 * 215.00396 * 21 2 1 36 36 H 1.09006 * 117.50210 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 8 1.3786 2.3046 -0.7720 5 6 1.8233 3.5722 -0.8720 6 8 2.8605 3.8965 -0.3295 7 6 1.0498 4.5679 -1.6426 8 6 -0.1482 4.1962 -2.2637 9 6 -0.8746 5.1214 -2.9915 10 6 -0.4338 6.4217 -3.1040 11 6 0.7654 6.8159 -2.4812 12 6 1.2206 8.1500 -2.5955 13 1 0.9196 8.7529 -3.4394 14 6 2.0611 8.6890 -1.6150 15 7 2.1562 8.1109 -0.4452 16 14 3.0473 10.2337 -1.9763 17 1 2.1211 11.3466 -2.3059 18 1 3.8534 10.5968 -0.7832 19 1 3.9522 9.9853 -3.1274 20 6 1.5080 5.8768 -1.7457 21 6 2.2364 -1.1207 0.7654 22 6 2.2368 -1.1210 -0.7646 23 1 1.6119 -1.8587 -1.2679 24 9 3.4371 -0.8052 -1.4103 25 1 -0.3634 0.8477 -0.5809 26 1 -0.3633 -0.9270 -0.4437 27 1 -0.3634 0.0791 1.0246 28 1 3.1821 1.3088 -0.4452 29 1 2.2765 1.7417 1.0247 30 1 -0.5048 3.1803 -2.1784 31 1 -1.7954 4.8236 -3.4708 32 1 -1.0089 7.1394 -3.6702 33 1 2.7391 8.4843 0.2344 34 1 2.4289 6.1696 -1.2635 35 1 3.1713 -0.8745 1.2689 36 1 1.6112 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822099620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:18 Heat of formation + Delta-G solvation = -114.460086 kcal Electronic energy + Delta-G solvation = -20846.649103 eV Core-core repulsion = 17402.888432 eV Total energy + Delta-G solvation = -3443.760671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.71696 -41.52403 -39.36017 -38.62242 -37.06640 -35.62408 -32.29488 -31.38644 -29.69916 -28.41931 -27.22630 -24.80484 -23.40869 -22.86759 -21.56639 -20.54538 -19.66981 -18.25249 -17.96018 -17.65398 -17.33056 -16.72595 -16.52360 -16.21776 -15.77803 -15.26244 -15.10387 -14.64538 -14.41485 -14.29480 -14.10902 -13.79247 -13.51553 -13.41396 -13.00236 -12.87575 -12.83517 -12.57731 -12.32182 -12.22952 -12.06944 -11.88750 -11.56945 -11.38399 -11.11078 -11.09573 -10.63459 -9.63540 -9.45645 -8.69719 -6.41538 0.10176 0.95911 1.36769 1.46204 1.50345 1.55721 1.77114 2.18289 2.42845 2.71174 3.05285 3.42210 3.53523 3.61351 3.83335 3.99092 4.05241 4.23947 4.27212 4.42039 4.61181 4.72516 4.75451 4.84833 4.95931 5.00142 5.03521 5.08832 5.11598 5.22934 5.26287 5.40547 5.45128 5.80124 5.87571 5.99564 6.21551 6.51336 6.76627 6.84708 6.87578 8.27843 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.004015 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.609202 B = 6972.492343 C = 7578.022250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.154 4.154 3 C 0.092 3.908 4 O -0.338 6.338 5 C 0.514 3.486 6 O -0.550 6.550 7 C -0.129 4.129 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.202 4.202 11 C 0.067 3.933 12 C -0.496 4.496 13 H 0.089 0.911 14 C 0.030 3.970 15 N -0.828 5.828 16 Si 0.984 3.016 17 H -0.251 1.251 18 H -0.273 1.273 19 H -0.261 1.261 20 C -0.125 4.125 21 C -0.152 4.152 22 C 0.013 3.987 23 H 0.169 0.831 24 F -0.206 7.206 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.117 0.883 33 H 0.288 0.712 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 -15.704 1.511 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.155 4.155 3 C 0.018 3.982 4 O -0.255 6.255 5 C 0.362 3.638 6 O -0.442 6.442 7 C -0.130 4.130 8 C -0.198 4.198 9 C -0.116 4.116 10 C -0.222 4.222 11 C 0.065 3.935 12 C -0.525 4.525 13 H 0.107 0.893 14 C -0.185 4.185 15 N -0.454 5.454 16 Si 0.804 3.196 17 H -0.175 1.175 18 H -0.197 1.197 19 H -0.185 1.185 20 C -0.145 4.145 21 C -0.188 4.188 22 C -0.022 4.022 23 H 0.186 0.814 24 F -0.186 7.186 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.105 -15.621 1.907 16.040 hybrid contribution 1.167 1.026 0.218 1.569 sum -1.938 -14.595 2.126 14.876 Atomic orbital electron populations 1.21283 0.88556 1.03618 1.03266 1.22153 0.98039 0.88217 1.07085 1.22474 0.93222 0.87217 0.95260 1.86519 1.51733 1.19567 1.67665 1.21783 0.82985 0.81692 0.77354 1.90737 1.25816 1.80740 1.46912 1.19075 0.98309 0.91943 1.03676 1.20961 0.95507 1.00297 1.03048 1.20975 0.99648 0.92626 0.98308 1.21527 0.96678 0.97125 1.06875 1.17889 0.91086 0.93487 0.91074 1.19860 1.27225 0.97420 1.08004 0.89312 1.26867 0.95940 1.02371 0.93282 1.69866 1.31257 1.40208 1.04036 0.85216 0.78454 0.77093 0.78797 1.17465 1.19735 1.18512 1.21466 1.00259 0.90665 1.02062 1.23982 1.03190 0.98937 0.92733 1.23000 0.84544 1.01509 0.93173 0.81434 1.92758 1.48632 1.94010 1.83206 0.92384 0.89229 0.90702 0.92353 0.90902 0.84814 0.83896 0.86525 0.90177 0.87856 0.87742 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.75 71.98 0.70 -1.26 16 2 C -0.15 -3.29 2.59 -52.18 -0.14 -3.43 16 3 C 0.09 2.90 5.57 71.98 0.40 3.30 16 4 O -0.34 -12.87 8.02 -56.19 -0.45 -13.32 16 5 C 0.51 24.20 7.90 70.34 0.56 24.76 16 6 O -0.55 -28.96 16.12 19.96 0.32 -28.64 16 7 C -0.13 -6.37 5.87 -20.14 -0.12 -6.49 16 8 C -0.18 -7.53 9.62 22.71 0.22 -7.31 16 9 C -0.10 -3.93 10.01 22.18 0.22 -3.70 16 10 C -0.20 -9.35 9.78 22.77 0.22 -9.12 16 11 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 12 C -0.50 -26.62 9.05 23.47 0.21 -26.41 16 13 H 0.09 4.44 7.90 -2.91 -0.02 4.42 16 14 C 0.03 1.57 5.14 85.25 0.44 2.00 16 15 N -0.83 -45.78 10.97 21.83 0.24 -45.54 16 16 Si 0.98 39.11 29.59 68.60 2.03 41.14 16 17 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 18 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 C -0.12 -6.97 8.24 23.02 0.19 -6.78 16 21 C -0.15 -2.20 9.96 30.59 0.30 -1.89 16 22 C 0.01 0.24 7.48 30.59 0.23 0.47 16 23 H 0.17 1.93 8.05 -2.39 -0.02 1.91 16 24 F -0.21 -5.54 16.50 44.97 0.74 -4.80 16 25 H 0.06 1.33 6.87 -2.39 -0.02 1.31 16 26 H 0.09 1.05 7.90 -2.39 -0.02 1.03 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 2.01 7.09 -2.39 -0.02 1.99 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.13 4.78 7.59 -2.91 -0.02 4.75 16 31 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 33 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 34 H 0.10 6.35 5.76 -2.91 -0.02 6.34 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.15 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -67.65 317.19 7.30 -60.35 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.09 Total: 23.18 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 3.32 Total: -32.37 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.24 Total: -45.54 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.13 Total: -41.96 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.74 Total: -4.80 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -67.65 7.30 -60.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822099620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.113 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds