Wall clock time and date at job start Tue Mar 31 2020 01:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 115.54944 * 2 1 4 4 O 1.45199 * 109.47333 * 325.66534 * 3 2 1 5 5 C 1.34702 * 117.00272 * 180.02562 * 4 3 2 6 6 O 1.21464 * 120.00234 * 359.97438 * 5 4 3 7 7 C 1.47772 * 120.00279 * 180.02562 * 5 4 3 8 8 C 1.39971 * 120.02689 * 0.27458 * 7 5 4 9 9 C 1.38312 * 120.34815 * 180.27877 * 8 7 5 10 10 C 1.37763 * 120.42292 * 359.72722 * 9 8 7 11 11 C 1.40755 * 120.04691 * 359.97438 * 10 9 8 12 12 C 1.41441 * 120.17430 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99696 * 334.95664 * 12 11 10 14 14 C 1.39935 * 120.00039 * 154.94747 * 12 11 10 15 15 N 1.30832 * 119.99745 * 342.61856 * 14 12 11 16 16 Si 1.86795 * 120.00136 * 162.61025 * 14 12 11 17 17 H 1.48505 * 109.46989 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47339 * 120.00401 * 16 14 12 19 19 H 1.48500 * 109.47092 * 240.00449 * 16 14 12 20 20 C 1.39050 * 120.03309 * 179.97438 * 7 5 4 21 21 C 1.53008 * 117.49650 * 145.66855 * 2 1 3 22 22 C 1.53003 * 60.00073 * 107.51199 * 21 2 1 23 23 H 1.08994 * 117.49950 * 107.48348 * 22 21 2 24 24 F 1.39894 * 117.50101 * 252.51155 * 22 21 2 25 25 H 1.09001 * 109.47108 * 34.42035 * 1 2 3 26 26 H 1.09003 * 109.47035 * 154.41447 * 1 2 3 27 27 H 1.08997 * 109.47421 * 274.42006 * 1 2 3 28 28 H 1.09006 * 109.47057 * 205.67115 * 3 2 1 29 29 H 1.08998 * 109.47441 * 85.66707 * 3 2 1 30 30 H 1.07995 * 119.82924 * 359.97438 * 8 7 5 31 31 H 1.08004 * 119.78770 * 179.73938 * 9 8 7 32 32 H 1.08002 * 119.97631 * 179.97438 * 10 9 8 33 33 H 0.97003 * 119.99679 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.20115 * 359.97438 * 20 7 5 35 35 H 1.08994 * 117.49572 * 215.00061 * 21 2 1 36 36 H 1.08998 * 117.49431 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 8 1.3788 2.3046 -0.7721 5 6 1.8235 3.5721 -0.8721 6 8 2.8602 3.8967 -0.3288 7 6 1.0495 4.5682 -1.6418 8 6 -0.1488 4.1966 -2.2625 9 6 -0.8755 5.1220 -2.9894 10 6 -0.4320 6.4210 -3.1065 11 6 0.7675 6.8150 -2.4841 12 6 1.2257 8.1478 -2.6030 13 1 0.9265 8.7482 -3.4495 14 6 2.0665 8.6886 -1.6239 15 7 2.1598 8.1144 -0.4520 16 14 3.0559 10.2301 -1.9900 17 1 2.7743 10.6813 -3.3766 18 1 2.6753 11.3012 -1.0345 19 1 4.5042 9.9336 -1.8500 20 6 1.5078 5.8769 -1.7450 21 6 2.2365 -1.1208 0.7655 22 6 2.2370 -1.1211 -0.7646 23 1 3.1721 -0.8751 -1.2676 24 9 1.4349 -2.0678 -1.4106 25 1 -0.3633 0.8477 -0.5809 26 1 -0.3633 -0.9269 -0.4438 27 1 -0.3634 0.0792 1.0246 28 1 3.1823 1.3086 -0.4452 29 1 2.2766 1.7416 1.0247 30 1 -0.5052 3.1807 -2.1775 31 1 -1.7968 4.8244 -3.4681 32 1 -1.0050 7.1376 -3.6761 33 1 2.7429 8.4891 0.2266 34 1 2.4291 6.1695 -1.2635 35 1 3.1713 -0.8747 1.2689 36 1 1.6111 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822099623.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:23 Heat of formation + Delta-G solvation = -100.571988 kcal Electronic energy + Delta-G solvation = -20748.686448 eV Core-core repulsion = 17305.528011 eV Total energy + Delta-G solvation = -3443.158437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.77788 -39.90243 -37.94639 -37.17383 -35.49141 -33.77373 -30.46120 -29.54790 -28.85985 -27.17324 -25.36067 -23.04026 -22.66948 -21.02450 -19.84031 -19.56066 -17.88135 -17.06795 -16.34559 -16.26918 -15.77371 -15.36564 -14.95645 -14.82639 -14.61079 -13.81611 -13.55375 -13.21289 -13.11880 -12.85165 -12.62558 -12.42682 -12.33546 -12.10274 -11.72935 -11.29261 -11.22698 -11.13921 -10.79773 -10.55522 -10.48659 -10.38039 -10.22265 -9.75677 -9.73160 -9.51592 -9.27827 -7.77959 -7.58561 -6.85732 -4.47005 1.93763 2.74403 2.95335 3.05087 3.09140 3.11029 3.31245 3.56098 3.85873 3.88159 4.35081 4.47194 4.55058 4.72941 4.85161 5.27122 5.35553 5.39326 5.50872 5.54424 5.70033 5.80418 5.83693 5.89885 6.09645 6.27480 6.38461 6.59919 6.89004 6.91359 6.95099 7.13845 7.27700 7.64664 7.71873 7.87641 8.06968 8.41190 8.50277 8.73765 8.75931 10.09778 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029421 B = 0.003819 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.488249 B = 7330.397883 C = 7976.817567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.133 4.133 3 C 0.103 3.897 4 O -0.350 6.350 5 C 0.513 3.487 6 O -0.519 6.519 7 C -0.115 4.115 8 C -0.193 4.193 9 C -0.104 4.104 10 C -0.201 4.201 11 C 0.096 3.904 12 C -0.460 4.460 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.788 5.788 16 Si 0.911 3.089 17 H -0.259 1.259 18 H -0.274 1.274 19 H -0.271 1.271 20 C -0.089 4.089 21 C -0.177 4.177 22 C 0.023 3.977 23 H 0.133 0.867 24 F -0.181 7.181 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.284 0.716 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.271 -12.485 1.948 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.134 4.134 3 C 0.029 3.971 4 O -0.267 6.267 5 C 0.360 3.640 6 O -0.408 6.408 7 C -0.117 4.117 8 C -0.213 4.213 9 C -0.122 4.122 10 C -0.220 4.220 11 C 0.093 3.907 12 C -0.489 4.489 13 H 0.101 0.899 14 C -0.146 4.146 15 N -0.412 5.412 16 Si 0.735 3.265 17 H -0.183 1.183 18 H -0.199 1.199 19 H -0.196 1.196 20 C -0.108 4.108 21 C -0.215 4.215 22 C -0.013 4.013 23 H 0.151 0.849 24 F -0.161 7.161 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.676 -12.410 2.345 12.648 hybrid contribution 0.545 0.524 0.094 0.762 sum 1.221 -11.886 2.439 12.195 Atomic orbital electron populations 1.21250 0.90166 1.03548 1.02636 1.22137 0.97487 0.89897 1.03871 1.22256 0.92940 0.85592 0.96312 1.86581 1.51702 1.20952 1.67491 1.21898 0.83613 0.80553 0.77940 1.90763 1.24569 1.79873 1.45624 1.18824 0.97200 0.92279 1.03372 1.20565 0.97014 0.98766 1.04906 1.20517 0.98493 0.93858 0.99329 1.21202 0.97575 0.95624 1.07645 1.17544 0.89823 0.93143 0.90175 1.19606 1.25223 0.97017 1.07063 0.89887 1.25963 0.95509 0.99130 0.93959 1.69788 1.30238 1.38252 1.02957 0.86217 0.79777 0.80657 0.79877 1.18291 1.19891 1.19569 1.21651 1.00354 0.89039 0.99753 1.23843 1.03505 1.00456 0.93675 1.22460 0.95239 0.91916 0.91679 0.84932 1.92779 1.75341 1.65424 1.82589 0.89897 0.91862 0.91823 0.91110 0.90418 0.87855 0.88501 0.88313 0.90478 0.84712 0.86946 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.72 37.16 0.36 -1.06 16 2 C -0.13 -1.56 2.59 -154.50 -0.40 -1.96 16 3 C 0.10 1.47 5.60 37.15 0.21 1.68 16 4 O -0.35 -6.36 8.02 -40.50 -0.32 -6.68 16 5 C 0.51 11.27 7.90 34.63 0.27 11.54 16 6 O -0.52 -12.39 16.12 -19.24 -0.31 -12.70 16 7 C -0.12 -2.74 5.87 -105.05 -0.62 -3.36 16 8 C -0.19 -4.19 9.62 -38.91 -0.37 -4.56 16 9 C -0.10 -2.21 10.01 -39.73 -0.40 -2.61 16 10 C -0.20 -4.68 9.78 -38.80 -0.38 -5.06 16 11 C 0.10 2.48 5.57 -106.87 -0.59 1.89 16 12 C -0.46 -11.85 9.05 -37.73 -0.34 -12.19 16 13 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 14 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 15 N -0.79 -20.43 10.97 55.55 0.61 -19.82 16 16 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 17 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 C -0.09 -2.32 8.24 -38.43 -0.32 -2.64 16 21 C -0.18 -1.57 9.96 -26.73 -0.27 -1.84 16 22 C 0.02 0.24 7.48 -26.73 -0.20 0.04 16 23 H 0.13 1.19 8.05 -51.93 -0.42 0.77 16 24 F -0.18 -2.27 16.50 2.25 0.04 -2.23 16 25 H 0.08 1.13 6.87 -51.93 -0.36 0.77 16 26 H 0.06 0.71 7.10 -51.93 -0.37 0.35 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.10 2.01 7.59 -52.49 -0.40 1.61 16 31 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 32 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 34 H 0.14 3.78 5.76 -52.49 -0.30 3.47 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -28.45 317.20 -7.71 -36.16 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.34 Total: 5.52 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -3.13 Total: -18.39 kcal Atomic # 7 Polarization: -20.43 SS G_CDS: 0.61 Total: -19.82 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.64 Total: -19.38 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.45 -7.71 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822099623.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.413 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds