Wall clock time and date at job start Tue Mar 31 2020 01:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 115.55310 * 2 1 4 4 O 1.45193 * 109.47149 * 34.41284 * 3 2 1 5 5 C 1.34707 * 117.00118 * 180.02562 * 4 3 2 6 6 O 1.21463 * 119.99905 * 359.97438 * 5 4 3 7 7 C 1.47768 * 120.00139 * 180.02562 * 5 4 3 8 8 C 1.39973 * 120.03073 * 359.97438 * 7 5 4 9 9 C 1.38313 * 120.35275 * 180.02562 * 8 7 5 10 10 C 1.37761 * 120.42059 * 359.95270 * 9 8 7 11 11 C 1.40755 * 120.04805 * 0.02562 * 10 9 8 12 12 C 1.41438 * 120.17250 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00121 * 334.74274 * 12 11 10 14 14 C 1.39945 * 119.99583 * 154.73783 * 12 11 10 15 15 N 1.30819 * 120.00309 * 334.65983 * 14 12 11 16 16 Si 1.86801 * 119.99591 * 154.66494 * 14 12 11 17 17 H 1.48499 * 109.47362 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47023 * 299.99961 * 16 14 12 19 19 H 1.48504 * 109.47286 * 59.99889 * 16 14 12 20 20 C 1.39049 * 120.03314 * 180.22888 * 7 5 4 21 21 C 1.53007 * 117.49955 * 214.32589 * 2 1 3 22 22 C 1.53005 * 117.49710 * 145.66783 * 2 1 3 23 23 H 1.09002 * 117.49710 * 0.02562 * 22 2 1 24 24 F 1.39904 * 117.49762 * 215.00089 * 22 2 1 25 25 H 1.09005 * 109.46985 * 85.58203 * 1 2 3 26 26 H 1.08998 * 109.47304 * 205.58793 * 1 2 3 27 27 H 1.08994 * 109.47018 * 325.59068 * 1 2 3 28 28 H 1.08999 * 109.46573 * 274.41326 * 3 2 1 29 29 H 1.08998 * 109.47300 * 154.41948 * 3 2 1 30 30 H 1.08004 * 119.82038 * 359.97438 * 8 7 5 31 31 H 1.07998 * 119.78846 * 179.97438 * 9 8 7 32 32 H 1.07995 * 119.97515 * 180.02562 * 10 9 8 33 33 H 0.96996 * 119.99927 * 354.20808 * 15 14 12 34 34 H 1.08004 * 120.20128 * 0.02600 * 20 7 5 35 35 H 1.08996 * 117.49615 * 359.97438 * 21 2 1 36 36 H 1.09002 * 117.49714 * 144.97597 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3798 2.3041 0.7736 5 6 1.8242 3.5719 0.8730 6 8 2.8603 3.8967 0.3286 7 6 1.0518 4.5672 1.6451 8 6 -0.1420 4.1936 2.2731 9 6 -0.8705 5.1199 2.9971 10 6 -0.4298 6.4203 3.1095 11 6 0.7686 6.8147 2.4853 12 6 1.2233 8.1492 2.5985 13 1 0.5185 8.9458 2.7857 14 6 2.5865 8.4373 2.4680 15 7 3.4779 7.5177 2.7347 16 14 3.1333 10.1350 1.9129 17 1 4.6164 10.1830 1.8546 18 1 2.5760 10.4188 0.5660 19 1 2.6421 11.1529 2.8763 20 6 1.5075 5.8772 1.7441 21 6 2.2365 -1.1208 -0.7653 22 6 2.2364 -1.1208 0.7655 23 1 1.6111 -1.8583 1.2686 24 9 3.4363 -0.8049 1.4117 25 1 -0.3633 0.0792 -1.0247 26 1 -0.3634 -0.9268 0.4438 27 1 -0.3633 0.8478 0.5807 28 1 2.2753 1.7422 -1.0246 29 1 3.1829 1.3084 0.4437 30 1 -0.4965 3.1767 2.1913 31 1 -1.7906 4.8218 3.4777 32 1 -1.0041 7.1376 3.6769 33 1 3.1994 6.6646 3.1028 34 1 2.4257 6.1713 1.2574 35 1 1.6112 -1.8584 -1.2684 36 1 3.1712 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822099625.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:27 Heat of formation + Delta-G solvation = -105.756639 kcal Electronic energy + Delta-G solvation = -20892.333903 eV Core-core repulsion = 17448.950642 eV Total energy + Delta-G solvation = -3443.383261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.78302 -39.95317 -38.04146 -37.35670 -35.58452 -33.99378 -30.49498 -29.38894 -28.82036 -27.29003 -25.19813 -23.19178 -22.66910 -21.06165 -20.02823 -19.60130 -18.33118 -17.03056 -16.55600 -16.36382 -15.78499 -15.34210 -14.81889 -14.72867 -14.21510 -14.03635 -13.74369 -13.53941 -13.21142 -12.91735 -12.77234 -12.39020 -12.35391 -12.10772 -11.99743 -11.36137 -11.28894 -11.00427 -10.70562 -10.49159 -10.41289 -10.40602 -10.31749 -9.78319 -9.74473 -9.56942 -9.07999 -7.95892 -7.77564 -7.26170 -4.54574 1.81304 2.67212 2.90635 3.13874 3.18790 3.27495 3.35828 3.49523 3.82038 3.99603 4.30751 4.40798 4.50439 4.72530 4.79323 5.30295 5.31942 5.33542 5.35945 5.46423 5.61891 5.71695 5.75757 5.84668 5.97327 6.15781 6.27032 6.48082 6.75030 6.78967 6.85946 7.09779 7.43897 7.57911 7.63727 7.68035 8.00665 8.07456 8.41121 8.56071 8.74705 9.98710 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025923 B = 0.004082 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.854897 B = 6857.201058 C = 7503.804530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.135 4.135 3 C 0.099 3.901 4 O -0.348 6.348 5 C 0.510 3.490 6 O -0.516 6.516 7 C -0.093 4.093 8 C -0.204 4.204 9 C -0.093 4.093 10 C -0.203 4.203 11 C 0.083 3.917 12 C -0.519 4.519 13 H 0.080 0.920 14 C 0.036 3.964 15 N -0.787 5.787 16 Si 1.067 2.933 17 H -0.273 1.273 18 H -0.273 1.273 19 H -0.275 1.275 20 C -0.148 4.148 21 C -0.178 4.178 22 C 0.023 3.977 23 H 0.135 0.865 24 F -0.180 7.180 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.299 0.701 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 -13.173 -4.639 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 C 0.025 3.975 4 O -0.266 6.266 5 C 0.357 3.643 6 O -0.405 6.405 7 C -0.094 4.094 8 C -0.224 4.224 9 C -0.112 4.112 10 C -0.223 4.223 11 C 0.080 3.920 12 C -0.546 4.546 13 H 0.098 0.902 14 C -0.187 4.187 15 N -0.409 5.409 16 Si 0.890 3.110 17 H -0.197 1.197 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.168 4.168 21 C -0.216 4.216 22 C -0.013 4.013 23 H 0.153 0.847 24 F -0.161 7.161 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.485 -12.240 -5.162 13.514 hybrid contribution -1.083 -1.076 0.366 1.570 sum -3.568 -13.316 -4.796 14.597 Atomic orbital electron populations 1.21283 0.89900 1.03191 1.02755 1.22142 0.97091 0.90235 1.04084 1.22214 0.93633 0.85593 0.96089 1.86537 1.51705 1.20844 1.67478 1.21870 0.83628 0.80761 0.78011 1.90780 1.24304 1.79965 1.45452 1.18738 0.96628 0.91966 1.02115 1.20525 0.96763 0.98867 1.06219 1.20558 0.98170 0.93791 0.98631 1.21157 1.00727 0.95312 1.05075 1.17590 0.91745 0.92989 0.89641 1.20568 0.95703 0.93369 1.44978 0.90152 1.27104 0.92979 1.05968 0.92632 1.70475 1.38369 1.07403 1.24661 0.83611 0.77141 0.72601 0.77663 1.19719 1.19874 1.20040 1.21441 1.02474 0.91250 1.01625 1.23843 1.03452 1.00522 0.93734 1.22493 0.85350 1.01735 0.91690 0.84741 1.92811 1.46984 1.93758 1.82513 0.91632 0.92157 0.89930 0.90622 0.90598 0.87674 0.88335 0.88233 0.88726 0.85961 0.86560 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.75 37.16 0.36 -0.79 16 2 C -0.13 -1.55 2.59 -154.50 -0.40 -1.95 16 3 C 0.10 1.53 5.57 37.16 0.21 1.74 16 4 O -0.35 -6.50 8.03 -40.51 -0.33 -6.83 16 5 C 0.51 11.49 7.90 34.63 0.27 11.76 16 6 O -0.52 -12.75 16.12 -19.24 -0.31 -13.06 16 7 C -0.09 -2.22 5.87 -105.05 -0.62 -2.84 16 8 C -0.20 -4.41 9.62 -38.90 -0.37 -4.78 16 9 C -0.09 -1.98 10.01 -39.73 -0.40 -2.37 16 10 C -0.20 -4.76 9.78 -38.81 -0.38 -5.14 16 11 C 0.08 2.17 5.30 -106.87 -0.57 1.60 16 12 C -0.52 -13.55 8.99 -37.73 -0.34 -13.89 16 13 H 0.08 2.01 7.96 -52.49 -0.42 1.59 16 14 C 0.04 0.91 4.94 -17.34 -0.09 0.83 16 15 N -0.79 -21.37 12.32 55.55 0.68 -20.69 16 16 Si 1.07 21.61 30.00 -169.99 -5.10 16.51 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 C -0.15 -3.90 7.49 -38.43 -0.29 -4.18 16 21 C -0.18 -1.55 9.96 -26.69 -0.27 -1.82 16 22 C 0.02 0.24 7.48 -26.69 -0.20 0.04 16 23 H 0.14 1.05 8.05 -51.93 -0.42 0.63 16 24 F -0.18 -2.52 16.50 2.25 0.04 -2.48 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 27 H 0.08 1.01 6.87 -51.93 -0.36 0.65 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.26 7.10 -51.93 -0.37 0.89 16 30 H 0.11 2.01 7.59 -52.48 -0.40 1.61 16 31 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.30 8.38 6.68 -40.82 -0.27 8.11 16 34 H 0.12 3.45 6.07 -52.48 -0.32 3.13 16 35 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 316.42 15.07 4.77 4.77 Total: -1.00 -29.42 316.42 -7.61 -37.03 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.29 Total: 6.54 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -3.07 Total: -21.80 kcal Atomic # 7 Polarization: -21.37 SS G_CDS: 0.68 Total: -20.69 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.64 Total: -19.88 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.10 Total: 16.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.42 -7.61 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822099625.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.725 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds