Wall clock time and date at job start Tue Mar 31 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 115.55310 * 2 1 4 4 O 1.45193 * 109.47149 * 34.41284 * 3 2 1 5 5 C 1.34707 * 117.00118 * 180.02562 * 4 3 2 6 6 O 1.21463 * 119.99905 * 359.97438 * 5 4 3 7 7 C 1.47768 * 120.00139 * 180.02562 * 5 4 3 8 8 C 1.39973 * 120.03073 * 359.97438 * 7 5 4 9 9 C 1.38313 * 120.35275 * 180.02562 * 8 7 5 10 10 C 1.37761 * 120.42059 * 359.95270 * 9 8 7 11 11 C 1.40755 * 120.04805 * 0.02562 * 10 9 8 12 12 C 1.41438 * 120.17250 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00121 * 334.74274 * 12 11 10 14 14 C 1.39945 * 119.99583 * 154.73783 * 12 11 10 15 15 N 1.30819 * 120.00309 * 334.65983 * 14 12 11 16 16 Si 1.86801 * 119.99591 * 154.66494 * 14 12 11 17 17 H 1.48499 * 109.47362 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47023 * 299.99961 * 16 14 12 19 19 H 1.48504 * 109.47286 * 59.99889 * 16 14 12 20 20 C 1.39049 * 120.03314 * 180.22888 * 7 5 4 21 21 C 1.53007 * 117.49955 * 214.32589 * 2 1 3 22 22 C 1.53005 * 117.49710 * 145.66783 * 2 1 3 23 23 H 1.09002 * 117.49710 * 0.02562 * 22 2 1 24 24 F 1.39904 * 117.49762 * 215.00089 * 22 2 1 25 25 H 1.09005 * 109.46985 * 85.58203 * 1 2 3 26 26 H 1.08998 * 109.47304 * 205.58793 * 1 2 3 27 27 H 1.08994 * 109.47018 * 325.59068 * 1 2 3 28 28 H 1.08999 * 109.46573 * 274.41326 * 3 2 1 29 29 H 1.08998 * 109.47300 * 154.41948 * 3 2 1 30 30 H 1.08004 * 119.82038 * 359.97438 * 8 7 5 31 31 H 1.07998 * 119.78846 * 179.97438 * 9 8 7 32 32 H 1.07995 * 119.97515 * 180.02562 * 10 9 8 33 33 H 0.96996 * 119.99927 * 354.20808 * 15 14 12 34 34 H 1.08004 * 120.20128 * 0.02600 * 20 7 5 35 35 H 1.08996 * 117.49615 * 359.97438 * 21 2 1 36 36 H 1.09002 * 117.49714 * 144.97597 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3798 2.3041 0.7736 5 6 1.8242 3.5719 0.8730 6 8 2.8603 3.8967 0.3286 7 6 1.0518 4.5672 1.6451 8 6 -0.1420 4.1936 2.2731 9 6 -0.8705 5.1199 2.9971 10 6 -0.4298 6.4203 3.1095 11 6 0.7686 6.8147 2.4853 12 6 1.2233 8.1492 2.5985 13 1 0.5185 8.9458 2.7857 14 6 2.5865 8.4373 2.4680 15 7 3.4779 7.5177 2.7347 16 14 3.1333 10.1350 1.9129 17 1 4.6164 10.1830 1.8546 18 1 2.5760 10.4188 0.5660 19 1 2.6421 11.1529 2.8763 20 6 1.5075 5.8772 1.7441 21 6 2.2365 -1.1208 -0.7653 22 6 2.2364 -1.1208 0.7655 23 1 1.6111 -1.8583 1.2686 24 9 3.4363 -0.8049 1.4117 25 1 -0.3633 0.0792 -1.0247 26 1 -0.3634 -0.9268 0.4438 27 1 -0.3633 0.8478 0.5807 28 1 2.2753 1.7422 -1.0246 29 1 3.1829 1.3084 0.4437 30 1 -0.4965 3.1767 2.1913 31 1 -1.7906 4.8218 3.4777 32 1 -1.0041 7.1376 3.6769 33 1 3.1994 6.6646 3.1028 34 1 2.4257 6.1713 1.2574 35 1 1.6112 -1.8584 -1.2684 36 1 3.1712 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822099625.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:26 Heat of formation + Delta-G solvation = -120.193701 kcal Electronic energy + Delta-G solvation = -20892.959941 eV Core-core repulsion = 17448.950642 eV Total energy + Delta-G solvation = -3444.009299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.74323 -41.63777 -39.57154 -38.71273 -37.15105 -35.88078 -32.33876 -31.26540 -29.73871 -28.46575 -27.10083 -24.93160 -23.43863 -22.92758 -21.78294 -20.58809 -20.15280 -18.44237 -18.04751 -17.72137 -17.27293 -16.69331 -16.39588 -15.99216 -15.81997 -15.73626 -15.26187 -14.78090 -14.39812 -14.25691 -14.13629 -13.91759 -13.78728 -13.44599 -13.11052 -12.90512 -12.73605 -12.48251 -12.35697 -12.17873 -11.99678 -11.95434 -11.58866 -11.43340 -11.14990 -10.94895 -10.66397 -9.84274 -9.67487 -9.23866 -6.54455 -0.05501 0.81600 1.45748 1.48146 1.50978 1.72029 1.78011 2.31592 2.39710 2.63813 3.02455 3.36467 3.41956 3.50272 3.79586 3.90187 4.02094 4.18325 4.22618 4.27269 4.46022 4.64618 4.71886 4.74256 4.88505 4.92877 4.95428 4.97654 5.06401 5.13204 5.22098 5.39619 5.52987 5.65500 5.73462 5.75885 6.08742 6.18457 6.60487 6.67093 6.84512 7.98575 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025923 B = 0.004082 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.854897 B = 6857.201058 C = 7503.804530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.154 4.154 3 C 0.092 3.908 4 O -0.336 6.336 5 C 0.513 3.487 6 O -0.548 6.548 7 C -0.109 4.109 8 C -0.182 4.182 9 C -0.087 4.087 10 C -0.202 4.202 11 C 0.057 3.943 12 C -0.554 4.554 13 H 0.085 0.915 14 C -0.001 4.001 15 N -0.819 5.819 16 Si 1.116 2.884 17 H -0.276 1.276 18 H -0.264 1.264 19 H -0.248 1.248 20 C -0.178 4.178 21 C -0.150 4.150 22 C 0.011 3.989 23 H 0.168 0.832 24 F -0.206 7.206 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.280 0.720 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 -15.097 -4.850 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.155 4.155 3 C 0.018 3.982 4 O -0.252 6.252 5 C 0.360 3.640 6 O -0.441 6.441 7 C -0.110 4.110 8 C -0.201 4.201 9 C -0.105 4.105 10 C -0.222 4.222 11 C 0.055 3.945 12 C -0.582 4.582 13 H 0.103 0.897 14 C -0.216 4.216 15 N -0.442 5.442 16 Si 0.933 3.067 17 H -0.201 1.201 18 H -0.189 1.189 19 H -0.172 1.172 20 C -0.198 4.198 21 C -0.187 4.187 22 C -0.025 4.025 23 H 0.185 0.815 24 F -0.187 7.187 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.172 0.828 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.952 -14.194 -5.362 15.960 hybrid contribution -0.469 -0.713 0.425 0.953 sum -5.421 -14.907 -4.938 16.612 Atomic orbital electron populations 1.21286 0.88429 1.03629 1.03356 1.22163 0.98105 0.88129 1.07056 1.22508 0.93182 0.87231 0.95296 1.86513 1.51713 1.19414 1.67590 1.21748 0.82941 0.81886 0.77381 1.90758 1.25675 1.80830 1.46804 1.18987 0.97768 0.91577 1.02707 1.20991 0.94986 1.00481 1.03643 1.21046 0.99422 0.92446 0.97615 1.21502 0.99562 0.96933 1.04156 1.17924 0.93072 0.93299 0.90228 1.20797 0.96320 0.93867 1.47170 0.89658 1.28537 0.93144 1.08678 0.91289 1.70596 1.38760 1.07383 1.27486 0.83039 0.76531 0.68914 0.78257 1.20126 1.18860 1.17202 1.21232 1.02244 0.92923 1.03377 1.23998 1.03190 0.98880 0.92633 1.23034 0.84580 1.01605 0.93246 0.81450 1.92761 1.48707 1.94010 1.83205 0.90530 0.89264 0.92361 0.90567 0.92497 0.84365 0.83502 0.86530 0.90823 0.89328 0.82844 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.75 71.98 0.70 -1.16 16 2 C -0.15 -3.20 2.59 -52.18 -0.13 -3.33 16 3 C 0.09 2.83 5.57 71.98 0.40 3.23 16 4 O -0.34 -12.48 8.03 -56.16 -0.45 -12.93 16 5 C 0.51 23.70 7.90 70.34 0.56 24.25 16 6 O -0.55 -28.60 16.12 19.96 0.32 -28.27 16 7 C -0.11 -5.28 5.87 -20.14 -0.12 -5.40 16 8 C -0.18 -7.44 9.62 22.71 0.22 -7.22 16 9 C -0.09 -3.43 10.01 22.17 0.22 -3.21 16 10 C -0.20 -9.23 9.78 22.77 0.22 -9.00 16 11 C 0.06 3.07 5.30 -21.32 -0.11 2.95 16 12 C -0.55 -29.87 8.99 23.47 0.21 -29.66 16 13 H 0.09 4.34 7.96 -2.91 -0.02 4.32 16 14 C 0.00 -0.04 4.94 85.26 0.42 0.38 16 15 N -0.82 -47.19 12.32 21.83 0.27 -46.93 16 16 Si 1.12 44.50 30.00 68.60 2.06 46.56 16 17 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 19 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 20 C -0.18 -9.79 7.49 23.02 0.17 -9.62 16 21 C -0.15 -2.12 9.96 30.62 0.31 -1.81 16 22 C 0.01 0.20 7.48 30.62 0.23 0.43 16 23 H 0.17 1.92 8.05 -2.39 -0.02 1.90 16 24 F -0.21 -5.63 16.50 44.97 0.74 -4.89 16 25 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.09 0.99 7.90 -2.39 -0.02 0.97 16 27 H 0.06 1.27 6.87 -2.39 -0.02 1.25 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 1.96 7.10 -2.39 -0.02 1.94 16 30 H 0.14 4.75 7.59 -2.91 -0.02 4.73 16 31 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 33 H 0.28 16.88 6.68 -92.71 -0.62 16.26 16 34 H 0.09 5.41 6.07 -2.91 -0.02 5.39 16 35 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -68.84 316.42 7.48 -61.37 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 1.24 Total: 24.27 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 3.29 Total: -39.18 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.27 Total: -46.93 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.13 Total: -41.20 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.74 Total: -4.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.06 Total: 46.56 kcal Total: -68.84 7.48 -61.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822099625.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.827 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds