Wall clock time and date at job start Tue Mar 31 2020 00:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37981 * 120.07223 * 2 1 4 4 C 1.38342 * 120.14788 * 180.02562 * 3 2 1 5 5 C 1.38380 * 120.28650 * 0.26132 * 4 3 2 6 6 N 1.48021 * 119.92152 * 179.72063 * 5 4 3 7 7 O 1.21800 * 119.99989 * 36.75495 * 6 5 4 8 8 O 1.21801 * 119.99493 * 216.75434 * 6 5 4 9 9 C 1.37936 * 120.15077 * 359.48522 * 5 4 3 10 10 C 1.50691 * 120.07706 * 180.25286 * 9 5 4 11 11 C 1.39558 * 120.07743 * 180.02562 * 2 1 3 12 12 C 1.47838 * 120.14260 * 359.97438 * 11 2 1 13 13 O 1.21555 * 119.99806 * 89.99715 * 12 11 2 14 14 N 1.34775 * 120.00249 * 270.00426 * 12 11 2 15 15 C 1.46500 * 120.00166 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47476 * 179.97438 * 15 14 12 17 17 H 1.08010 * 119.99747 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00385 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99719 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00009 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46713 * 89.99776 * 20 18 16 22 22 H 1.48498 * 109.47242 * 210.00076 * 20 18 16 23 23 H 1.48502 * 109.46797 * 330.00361 * 20 18 16 24 24 H 1.09003 * 109.47301 * 89.99851 * 1 2 3 25 25 H 1.08997 * 109.47401 * 209.99434 * 1 2 3 26 26 H 1.09001 * 109.47627 * 329.99918 * 1 2 3 27 27 H 1.08001 * 119.92654 * 0.04671 * 3 2 1 28 28 H 1.07992 * 119.85123 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47082 * 275.84766 * 10 9 5 30 30 H 1.09000 * 109.47193 * 35.84913 * 10 9 5 31 31 H 1.09000 * 109.47609 * 155.84567 * 10 9 5 32 32 H 0.96993 * 119.99801 * 359.97438 * 14 12 11 33 33 H 1.09000 * 109.47091 * 300.00106 * 15 14 12 34 34 H 1.09003 * 109.47017 * 59.99401 * 15 14 12 35 35 H 0.97008 * 119.99438 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1959 -0.0005 5 6 4.2812 0.0019 -0.0065 6 7 5.7614 0.0133 -0.0133 7 8 6.3667 0.8616 0.6171 8 8 6.3739 -0.8257 -0.6493 9 6 3.6023 -1.1988 -0.0013 10 6 4.3657 -2.4980 -0.0021 11 6 2.2064 -1.2077 -0.0005 12 6 1.4721 -2.4908 -0.0005 13 8 1.1698 -3.0180 -1.0533 14 7 1.1378 -3.0760 1.1666 15 6 0.4106 -4.3478 1.1666 16 6 0.1620 -4.7844 2.5873 17 1 0.5111 -4.1755 3.4083 18 6 -0.5102 -5.9615 2.8392 19 7 -0.7267 -6.3427 4.0792 20 14 -1.1134 -7.0149 1.4194 21 1 -0.0575 -7.9885 1.0419 22 1 -2.3377 -7.7473 1.8317 23 1 -1.4245 -6.1461 0.2559 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3634 0.8900 0.5138 27 1 1.6583 2.1294 0.0008 28 1 4.1181 2.1333 -0.0010 29 1 4.6356 -2.7602 -1.0250 30 1 5.2705 -2.3881 0.5957 31 1 3.7432 -3.2856 0.4226 32 1 1.3792 -2.6554 2.0066 33 1 -0.5424 -4.2214 0.6529 34 1 1.0028 -5.1049 0.6525 35 1 -1.2000 -7.1707 4.2564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822502239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:52 Heat of formation + Delta-G solvation = -43.691165 kcal Electronic energy + Delta-G solvation = -21279.053179 eV Core-core repulsion = 17858.281241 eV Total energy + Delta-G solvation = -3420.771938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 4.79 seconds Orbital eigenvalues (eV) -43.40075 -41.67479 -39.72986 -37.74877 -36.29656 -35.17041 -34.54937 -33.69900 -30.26208 -29.74634 -28.82607 -26.04811 -25.39938 -23.64502 -22.42795 -21.80266 -20.39787 -19.85497 -19.04487 -18.78881 -17.76859 -17.35666 -17.26896 -16.50826 -16.18700 -15.70595 -15.32684 -15.08771 -14.76155 -14.41842 -14.38785 -14.10578 -14.02571 -13.34639 -13.23023 -13.16363 -13.06868 -12.84292 -12.74924 -12.72347 -12.29560 -12.11454 -11.95987 -11.71089 -11.21614 -10.95202 -10.44253 -10.25374 -10.13133 -8.42370 -6.50464 -1.18685 -0.37631 0.01157 0.24896 1.31190 1.34694 1.36868 1.45755 1.92391 2.20831 2.26067 2.93229 3.13793 3.23918 3.38640 3.58904 3.74477 3.93426 4.11555 4.22923 4.31074 4.46597 4.61269 4.62565 4.67263 4.73294 4.79014 4.95016 4.96324 5.08232 5.13990 5.18252 5.30647 5.38653 6.00684 6.42854 6.47116 6.61309 7.01359 7.19094 8.72262 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.004508 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.482879 B = 6209.547499 C = 6702.086386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.005 3.995 3 C -0.102 4.102 4 C -0.029 4.029 5 C -0.066 4.066 6 N 0.030 4.970 7 O -0.153 6.153 8 O -0.181 6.181 9 C 0.004 3.996 10 C -0.130 4.130 11 C -0.140 4.140 12 C 0.562 3.438 13 O -0.575 6.575 14 N -0.691 5.691 15 C 0.231 3.769 16 C -0.548 4.548 17 H 0.058 0.942 18 C 0.029 3.971 19 N -0.930 5.930 20 Si 0.935 3.065 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.256 1.256 24 H 0.094 0.906 25 H 0.054 0.946 26 H 0.120 0.880 27 H 0.202 0.798 28 H 0.181 0.819 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.408 0.592 33 H 0.023 0.977 34 H 0.016 0.984 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.033 18.011 -8.175 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.004 3.996 3 C -0.119 4.119 4 C -0.047 4.047 5 C -0.148 4.148 6 N 0.550 4.450 7 O -0.373 6.373 8 O -0.393 6.393 9 C 0.002 3.998 10 C -0.187 4.187 11 C -0.144 4.144 12 C 0.347 3.653 13 O -0.456 6.456 14 N -0.339 5.339 15 C 0.108 3.892 16 C -0.586 4.586 17 H 0.076 0.924 18 C -0.171 4.171 19 N -0.568 5.568 20 Si 0.759 3.241 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.180 1.180 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.219 0.781 28 H 0.199 0.801 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.244 0.756 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.007 17.414 -8.789 19.913 hybrid contribution 0.379 -1.046 0.191 1.128 sum 4.386 16.368 -8.598 19.002 Atomic orbital electron populations 1.21146 0.88119 1.05084 1.04545 1.20666 0.98267 0.91069 0.89553 1.21461 0.91698 0.99183 0.99607 1.21493 0.95262 0.96305 0.91685 1.20819 0.78235 0.96992 1.18765 1.43718 1.04037 0.99228 0.98049 1.94511 1.69932 1.31936 1.40886 1.94562 1.69536 1.33450 1.41718 1.19582 0.92590 0.94730 0.92866 1.21066 0.99904 0.92883 1.04804 1.19629 0.91806 0.94341 1.08608 1.18300 0.78797 0.84299 0.83877 1.90771 1.56680 1.65664 1.32460 1.46109 1.55968 1.23789 1.08066 1.19222 0.91683 0.81901 0.96411 1.21221 1.38267 1.07923 0.91172 0.92378 1.25571 0.95103 0.98392 0.98061 1.69981 1.41897 1.24218 1.20726 0.85892 0.78819 0.79488 0.79930 1.19185 1.19857 1.17980 0.88721 0.92693 0.86149 0.78137 0.80139 0.88313 0.90092 0.91366 0.75642 0.95928 0.96643 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.62 71.23 0.69 -1.59 16 2 C 0.01 0.10 5.91 -19.61 -0.12 -0.01 16 3 C -0.10 -1.25 9.69 22.23 0.22 -1.04 16 4 C -0.03 -0.44 9.65 22.33 0.22 -0.23 16 5 C -0.07 -1.54 6.48 36.34 0.24 -1.31 16 6 N 0.03 0.81 4.14 -46.55 -0.19 0.62 16 7 O -0.15 -4.03 18.92 18.89 0.36 -3.67 16 8 O -0.18 -5.33 16.75 18.89 0.32 -5.02 16 9 C 0.00 0.12 5.91 -19.61 -0.12 0.00 16 10 C -0.13 -3.73 8.31 71.23 0.59 -3.13 16 11 C -0.14 -3.87 5.63 -20.09 -0.11 -3.98 16 12 C 0.56 20.18 4.10 86.78 0.36 20.53 16 13 O -0.58 -24.92 17.11 -3.89 -0.07 -24.98 16 14 N -0.69 -26.37 5.55 -469.72 -2.60 -28.98 16 15 C 0.23 10.73 4.50 85.63 0.38 11.11 16 16 C -0.55 -29.11 9.83 25.60 0.25 -28.85 16 17 H 0.06 3.27 7.84 -2.91 -0.02 3.25 16 18 C 0.03 1.61 5.47 84.66 0.46 2.08 16 19 N -0.93 -54.25 13.96 21.45 0.30 -53.95 16 20 Si 0.94 42.42 27.47 68.60 1.88 44.31 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -11.30 6.54 99.48 0.65 -10.65 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.28 7.08 -2.39 -0.02 1.27 16 26 H 0.12 1.14 8.09 -2.39 -0.02 1.12 16 27 H 0.20 0.59 8.06 -2.91 -0.02 0.56 16 28 H 0.18 1.72 7.99 -2.91 -0.02 1.69 16 29 H 0.10 2.77 8.13 -2.39 -0.02 2.75 16 30 H 0.08 2.21 6.92 -2.39 -0.02 2.20 16 31 H 0.07 2.14 6.88 -2.39 -0.02 2.12 16 32 H 0.41 14.10 8.31 -92.71 -0.77 13.33 16 33 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 34 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 35 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -68.77 310.26 3.36 -65.41 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.31 Total: 12.68 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 3.05 Total: -6.42 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.50 Total: -82.31 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: 0.61 Total: -33.67 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.88 Total: 44.31 kcal Total: -68.77 3.36 -65.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822502239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.719 kcal (2) G-P(sol) polarization free energy of solvation -68.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.79 seconds