Wall clock time and date at job start Tue Mar 31 2020 00:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99857 * 2 1 4 4 H 1.48494 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46802 * 299.99438 * 3 2 1 6 6 H 1.48498 * 109.47134 * 59.99877 * 3 2 1 7 7 C 1.37872 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99961 * 359.97438 * 7 2 1 10 10 O 1.42907 * 110.91074 * 62.44988 * 9 7 2 11 11 C 1.55153 * 111.00740 * 186.34966 * 9 7 2 12 12 C 1.54330 * 103.02334 * 153.38314 * 11 9 7 13 13 N 1.47025 * 107.26452 * 338.14180 * 12 11 9 14 14 C 1.34779 * 125.64724 * 178.84344 * 13 12 11 15 15 O 1.21493 * 119.99764 * 185.11334 * 14 13 12 16 16 C 1.48182 * 119.99990 * 5.12365 * 14 13 12 17 17 C 1.36009 * 119.76958 * 173.66225 * 16 14 13 18 18 C 1.41982 * 119.03358 * 180.24464 * 17 16 14 19 19 O 1.22193 * 120.69100 * 179.75178 * 18 17 16 20 20 C 1.41278 * 118.62048 * 359.76719 * 18 17 16 21 21 C 1.35368 * 119.44240 * 0.02562 * 20 18 17 22 22 N 1.34760 * 120.95246 * 359.97426 * 21 20 18 23 23 H 0.96996 * 119.25683 * 179.97438 * 22 21 20 24 24 C 1.47424 * 108.70256 * 358.58698 * 13 12 11 25 25 H 0.97000 * 119.99747 * 0.02562 * 1 2 3 26 26 H 0.96692 * 113.99890 * 297.54924 * 10 9 7 27 27 H 1.09000 * 110.72054 * 271.94681 * 11 9 7 28 28 H 1.09008 * 110.71655 * 35.03530 * 11 9 7 29 29 H 1.09001 * 109.99344 * 218.66682 * 12 11 9 30 30 H 1.08998 * 109.77683 * 97.49699 * 12 11 9 31 31 H 1.08001 * 120.48151 * 359.97438 * 17 16 14 32 32 H 1.07997 * 120.27916 * 179.97438 * 20 18 17 33 33 H 1.07997 * 119.52896 * 180.02562 * 21 20 18 34 34 H 1.09001 * 110.36604 * 143.19320 * 24 13 12 35 35 H 1.08998 * 110.36105 * 265.40821 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4609 -2.6329 -1.1815 11 6 2.2197 -3.7005 0.1623 12 6 1.3304 -4.7794 0.8155 13 7 0.2072 -4.0858 1.4629 14 6 -0.8054 -4.6791 2.1256 15 8 -1.7314 -4.0124 2.5428 16 6 -0.7892 -6.1444 2.3454 17 6 -1.7438 -6.7211 3.1238 18 6 -1.7104 -8.1258 3.3282 19 8 -2.5503 -8.6747 4.0255 20 6 -0.6855 -8.8755 2.7090 21 6 0.2325 -8.2413 1.9424 22 7 0.1819 -6.9069 1.7618 23 1 0.8525 -6.4777 1.2078 24 6 0.3754 -2.6336 1.2724 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2254 -1.9582 -1.2744 27 1 2.5846 -4.0342 -0.8091 28 1 3.0519 -3.4400 0.8165 29 1 1.9024 -5.3335 1.5598 30 1 0.9549 -5.4600 0.0514 31 1 -2.5136 -6.1188 3.5833 32 1 -0.6344 -9.9454 2.8467 33 1 1.0163 -8.8132 1.4680 34 1 -0.5925 -2.1566 1.1183 35 1 0.8815 -2.1945 2.1321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823533573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:50 Heat of formation + Delta-G solvation = -59.576951 kcal Electronic energy + Delta-G solvation = -21751.676244 eV Core-core repulsion = 18330.215447 eV Total energy + Delta-G solvation = -3421.460798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38341 -39.38363 -37.59858 -37.55181 -34.68976 -32.41904 -32.01242 -31.37209 -30.48890 -28.27448 -25.95721 -24.38341 -23.51304 -22.51458 -20.78453 -19.93382 -17.94364 -17.68405 -17.31968 -16.91163 -15.82191 -15.60753 -15.42466 -14.92107 -14.69827 -14.61269 -14.45446 -13.63525 -13.36111 -13.22519 -13.01697 -12.91950 -12.59807 -12.40278 -11.82355 -11.71699 -11.22784 -11.10982 -10.96121 -10.61272 -10.42377 -10.08260 -9.82517 -9.64163 -9.36851 -8.88324 -8.66367 -8.27713 -8.07923 -6.45227 -4.56119 0.75900 1.21623 2.61205 2.97377 3.03299 3.10827 3.19845 3.21817 3.81862 4.12298 4.20097 4.45761 4.72664 4.82569 4.86907 5.00248 5.04844 5.22024 5.31611 5.57777 5.60660 5.78863 6.03476 6.12726 6.36327 6.39180 6.48181 6.52614 6.66254 6.73685 6.97563 7.08423 7.56463 7.66747 7.78626 8.09527 8.15078 8.48413 9.08168 9.19260 10.62041 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038242 B = 0.004370 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.994744 B = 6406.062737 C = 6835.797498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.113 4.113 12 C 0.079 3.921 13 N -0.604 5.604 14 C 0.560 3.440 15 O -0.510 6.510 16 C 0.123 3.877 17 C -0.211 4.211 18 C 0.391 3.609 19 O -0.528 6.528 20 C -0.300 4.300 21 C 0.146 3.854 22 N -0.590 5.590 23 H 0.424 0.576 24 C 0.092 3.908 25 H 0.272 0.728 26 H 0.384 0.616 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.094 0.906 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.864 -11.035 -0.008 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.151 4.151 12 C -0.045 4.045 13 N -0.337 5.337 14 C 0.345 3.655 15 O -0.385 6.385 16 C 0.012 3.988 17 C -0.238 4.238 18 C 0.283 3.717 19 O -0.415 6.415 20 C -0.326 4.326 21 C 0.016 3.984 22 N -0.211 5.211 23 H 0.274 0.726 24 C -0.029 4.029 25 H 0.082 0.918 26 H 0.235 0.765 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.176 0.824 32 H 0.165 0.835 33 H 0.186 0.814 34 H 0.112 0.888 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.110 -11.313 0.506 12.424 hybrid contribution 0.439 1.487 -0.164 1.559 sum 5.549 -9.827 0.342 11.290 Atomic orbital electron populations 1.69702 1.06042 1.28167 1.49005 1.25084 0.95058 0.99936 0.93055 0.86319 0.79999 0.82525 0.77925 1.19532 1.20637 1.20671 1.21443 0.93739 0.89768 1.53061 0.91250 1.19619 0.86459 0.91697 0.81287 1.86096 1.51593 1.57323 1.44165 1.22638 0.97492 0.94510 1.00498 1.22308 0.89086 0.97267 0.95835 1.48841 1.22285 1.10969 1.51642 1.17657 0.82661 0.85261 0.79892 1.90833 1.33638 1.63453 1.50617 1.20557 0.90814 0.91309 0.96088 1.22952 1.00445 0.97956 1.02400 1.17273 0.85205 0.88059 0.81163 1.90784 1.39724 1.73805 1.37163 1.22407 1.00583 1.02330 1.07248 1.21801 0.98364 0.83109 0.95139 1.42546 1.27479 1.07062 1.43968 0.72637 1.23509 1.03562 0.75277 1.00536 0.91796 0.76548 0.89971 0.89630 0.91691 0.91282 0.82371 0.83465 0.81417 0.88760 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.15 10.69 55.43 0.59 -21.55 16 2 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 3 Si 0.91 19.03 29.54 -169.99 -5.02 14.00 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.54 -12.75 8.27 -34.44 -0.28 -13.04 16 8 H 0.07 1.60 7.79 -52.49 -0.41 1.19 16 9 C 0.25 5.29 0.87 -89.62 -0.08 5.22 16 10 O -0.58 -13.23 13.16 -35.23 -0.46 -13.69 16 11 C -0.11 -1.81 6.13 -24.90 -0.15 -1.96 16 12 C 0.08 1.04 5.03 -3.06 -0.02 1.03 16 13 N -0.60 -10.58 3.33 -171.61 -0.57 -11.15 16 14 C 0.56 10.11 7.82 -12.17 -0.10 10.02 16 15 O -0.51 -11.10 16.53 5.37 0.09 -11.01 16 16 C 0.12 1.80 6.73 -82.48 -0.55 1.24 16 17 C -0.21 -3.37 9.55 -38.95 -0.37 -3.74 16 18 C 0.39 6.27 6.78 -36.99 -0.25 6.02 16 19 O -0.53 -10.43 17.89 4.74 0.08 -10.34 16 20 C -0.30 -3.47 10.00 -39.45 -0.39 -3.86 16 21 C 0.15 1.23 11.13 -17.29 -0.19 1.03 16 22 N -0.59 -6.18 4.98 -9.82 -0.05 -6.22 16 23 H 0.42 3.74 3.11 -40.96 -0.13 3.61 16 24 C 0.09 1.94 5.41 -2.53 -0.01 1.92 16 25 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 26 H 0.38 9.14 7.57 45.56 0.34 9.48 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.09 1.27 8.03 -51.92 -0.42 0.85 16 29 H 0.07 0.64 7.05 -51.93 -0.37 0.27 16 30 H 0.07 0.79 6.97 -51.93 -0.36 0.43 16 31 H 0.16 2.68 7.60 -52.49 -0.40 2.28 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.09 2.30 7.28 -51.93 -0.38 1.92 16 35 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 LS Contribution 296.43 15.07 4.47 4.47 Total: -1.00 -30.70 296.43 -6.30 -37.00 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -2.93 Total: 12.97 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -2.50 Total: 5.54 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.03 Total: -38.93 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.29 Total: -35.05 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.70 -6.30 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823533573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.575 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds