Wall clock time and date at job start Tue Mar 31 2020 00:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99857 * 2 1 4 4 H 1.48494 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46802 * 299.99438 * 3 2 1 6 6 H 1.48498 * 109.47134 * 59.99877 * 3 2 1 7 7 C 1.37872 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99961 * 359.97438 * 7 2 1 10 10 O 1.42907 * 110.91074 * 62.44988 * 9 7 2 11 11 C 1.55153 * 111.00740 * 186.34966 * 9 7 2 12 12 C 1.54330 * 103.02334 * 153.38314 * 11 9 7 13 13 N 1.47025 * 107.26452 * 338.14180 * 12 11 9 14 14 C 1.34779 * 125.64724 * 178.84344 * 13 12 11 15 15 O 1.21493 * 119.99764 * 185.11334 * 14 13 12 16 16 C 1.48182 * 119.99990 * 5.12365 * 14 13 12 17 17 C 1.36009 * 119.76958 * 173.66225 * 16 14 13 18 18 C 1.41982 * 119.03358 * 180.24464 * 17 16 14 19 19 O 1.22193 * 120.69100 * 179.75178 * 18 17 16 20 20 C 1.41278 * 118.62048 * 359.76719 * 18 17 16 21 21 C 1.35368 * 119.44240 * 0.02562 * 20 18 17 22 22 N 1.34760 * 120.95246 * 359.97426 * 21 20 18 23 23 H 0.96996 * 119.25683 * 179.97438 * 22 21 20 24 24 C 1.47424 * 108.70256 * 358.58698 * 13 12 11 25 25 H 0.97000 * 119.99747 * 0.02562 * 1 2 3 26 26 H 0.96692 * 113.99890 * 297.54924 * 10 9 7 27 27 H 1.09000 * 110.72054 * 271.94681 * 11 9 7 28 28 H 1.09008 * 110.71655 * 35.03530 * 11 9 7 29 29 H 1.09001 * 109.99344 * 218.66682 * 12 11 9 30 30 H 1.08998 * 109.77683 * 97.49699 * 12 11 9 31 31 H 1.08001 * 120.48151 * 359.97438 * 17 16 14 32 32 H 1.07997 * 120.27916 * 179.97438 * 20 18 17 33 33 H 1.07997 * 119.52896 * 180.02562 * 21 20 18 34 34 H 1.09001 * 110.36604 * 143.19320 * 24 13 12 35 35 H 1.08998 * 110.36105 * 265.40821 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4609 -2.6329 -1.1815 11 6 2.2197 -3.7005 0.1623 12 6 1.3304 -4.7794 0.8155 13 7 0.2072 -4.0858 1.4629 14 6 -0.8054 -4.6791 2.1256 15 8 -1.7314 -4.0124 2.5428 16 6 -0.7892 -6.1444 2.3454 17 6 -1.7438 -6.7211 3.1238 18 6 -1.7104 -8.1258 3.3282 19 8 -2.5503 -8.6747 4.0255 20 6 -0.6855 -8.8755 2.7090 21 6 0.2325 -8.2413 1.9424 22 7 0.1819 -6.9069 1.7618 23 1 0.8525 -6.4777 1.2078 24 6 0.3754 -2.6336 1.2724 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2254 -1.9582 -1.2744 27 1 2.5846 -4.0342 -0.8091 28 1 3.0519 -3.4400 0.8165 29 1 1.9024 -5.3335 1.5598 30 1 0.9549 -5.4600 0.0514 31 1 -2.5136 -6.1188 3.5833 32 1 -0.6344 -9.9454 2.8467 33 1 1.0163 -8.8132 1.4680 34 1 -0.5925 -2.1566 1.1183 35 1 0.8815 -2.1945 2.1321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823533573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:49 Heat of formation + Delta-G solvation = -83.711215 kcal Electronic energy + Delta-G solvation = -21752.722785 eV Core-core repulsion = 18330.215447 eV Total energy + Delta-G solvation = -3422.507338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.55911 -40.72847 -39.14045 -38.75775 -36.28349 -34.24767 -33.13308 -32.55656 -31.86441 -29.75891 -27.57040 -25.80626 -24.51564 -23.77849 -22.05927 -21.49675 -19.21692 -18.99767 -18.81730 -18.07986 -17.21704 -17.11363 -16.87444 -16.40567 -15.96708 -15.86257 -15.70403 -15.03003 -14.90590 -14.77508 -14.19286 -14.07398 -13.77466 -13.70173 -13.51919 -13.22932 -12.89199 -12.58156 -12.40264 -12.23070 -12.15528 -11.57325 -11.24770 -10.86754 -10.70803 -10.58894 -10.36127 -9.75824 -9.21773 -8.27293 -6.43809 -0.49725 0.34203 1.39580 1.45338 1.47614 1.55063 1.59699 1.81224 2.37624 2.69393 2.97734 3.01854 3.55397 3.70882 3.82067 3.99464 4.00927 4.04095 4.12929 4.27459 4.39517 4.60734 4.65233 4.92106 4.99043 5.00923 5.12042 5.31432 5.38573 5.44320 5.59130 5.74172 5.91075 6.03124 6.26199 6.64538 6.71757 6.96729 7.23710 7.33671 8.77786 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038242 B = 0.004370 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.994744 B = 6406.062737 C = 6835.797498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.231 3.769 10 O -0.586 6.586 11 C -0.106 4.106 12 C 0.072 3.928 13 N -0.603 5.603 14 C 0.555 3.445 15 O -0.562 6.562 16 C 0.141 3.859 17 C -0.232 4.232 18 C 0.373 3.627 19 O -0.590 6.590 20 C -0.315 4.315 21 C 0.186 3.814 22 N -0.568 5.568 23 H 0.436 0.564 24 C 0.103 3.897 25 H 0.268 0.732 26 H 0.374 0.626 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.169 0.831 33 H 0.243 0.757 34 H 0.050 0.950 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 -13.409 -1.364 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.190 3.810 10 O -0.394 6.394 11 C -0.144 4.144 12 C -0.050 4.050 13 N -0.335 5.335 14 C 0.342 3.658 15 O -0.440 6.440 16 C 0.028 3.972 17 C -0.259 4.259 18 C 0.271 3.729 19 O -0.482 6.482 20 C -0.339 4.339 21 C 0.056 3.944 22 N -0.188 5.188 23 H 0.289 0.711 24 C -0.020 4.020 25 H 0.078 0.922 26 H 0.223 0.777 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.133 0.867 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.187 0.813 33 H 0.259 0.741 34 H 0.069 0.931 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.850 -13.712 -0.895 16.345 hybrid contribution -0.611 2.289 0.186 2.376 sum 8.239 -11.423 -0.710 14.102 Atomic orbital electron populations 1.69827 1.07177 1.28342 1.50184 1.25778 0.95619 1.02756 0.93164 0.85478 0.79412 0.79326 0.77246 1.18465 1.20991 1.21264 1.21846 0.94178 0.90997 1.52103 0.90776 1.19888 0.87137 0.93539 0.80388 1.86087 1.51427 1.56818 1.45040 1.22635 0.96945 0.92651 1.02172 1.22682 0.87685 0.96907 0.97681 1.48815 1.23339 1.09872 1.51451 1.18120 0.81968 0.86583 0.79155 1.90810 1.35641 1.65004 1.52564 1.19868 0.91681 0.89460 0.96152 1.22834 1.00897 0.98467 1.03706 1.17788 0.86027 0.88008 0.81106 1.90753 1.42469 1.74428 1.40551 1.22438 1.00064 1.03279 1.08069 1.22765 0.97920 0.81577 0.92154 1.42637 1.25859 1.07911 1.42425 0.71096 1.23063 1.01119 0.77446 1.00328 0.92244 0.77747 0.88200 0.88221 0.86679 0.88272 0.85108 0.81337 0.74135 0.93100 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.05 10.69 21.45 0.23 -46.82 16 2 C 0.03 1.36 5.29 84.65 0.45 1.81 16 3 Si 0.96 39.11 29.54 68.60 2.03 41.13 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -25.67 8.27 25.60 0.21 -25.46 16 8 H 0.07 3.29 7.79 -2.91 -0.02 3.27 16 9 C 0.23 9.55 0.87 -10.15 -0.01 9.54 16 10 O -0.59 -26.39 13.16 -148.98 -1.96 -28.35 16 11 C -0.11 -2.96 6.13 31.78 0.19 -2.77 16 12 C 0.07 1.55 5.03 86.73 0.44 1.99 16 13 N -0.60 -20.22 3.33 -815.16 -2.71 -22.93 16 14 C 0.55 19.94 7.82 86.89 0.68 20.62 16 15 O -0.56 -25.79 16.53 -3.69 -0.06 -25.86 16 16 C 0.14 3.87 6.73 40.53 0.27 4.14 16 17 C -0.23 -7.57 9.55 22.68 0.22 -7.36 16 18 C 0.37 11.95 6.78 23.95 0.16 12.12 16 19 O -0.59 -24.37 17.89 -5.95 -0.11 -24.48 16 20 C -0.31 -6.08 10.00 22.35 0.22 -5.85 16 21 C 0.19 1.85 11.13 83.58 0.93 2.78 16 22 N -0.57 -8.75 4.98 -184.98 -0.92 -9.67 16 23 H 0.44 4.63 3.11 -92.84 -0.29 4.34 16 24 C 0.10 4.41 5.41 86.85 0.47 4.88 16 25 H 0.27 13.40 8.31 -92.71 -0.77 12.62 16 26 H 0.37 18.31 7.57 -74.06 -0.56 17.75 16 27 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.10 2.51 8.03 -2.38 -0.02 2.49 16 29 H 0.12 1.43 7.05 -2.39 -0.02 1.41 16 30 H 0.10 1.62 6.97 -2.39 -0.02 1.60 16 31 H 0.13 4.89 7.60 -2.91 -0.02 4.87 16 32 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.24 -0.86 8.06 -2.91 -0.02 -0.89 16 34 H 0.05 2.62 7.28 -2.39 -0.02 2.60 16 35 H 0.05 2.47 8.03 -2.39 -0.02 2.45 16 Total: -1.00 -75.51 296.43 1.03 -74.47 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.30 Total: 26.07 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 4.24 Total: 16.43 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -3.40 Total: -79.42 kcal Atomic # 8 Polarization: -76.56 SS G_CDS: -2.13 Total: -78.69 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Total: -75.51 1.03 -74.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823533573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.236 kcal (2) G-P(sol) polarization free energy of solvation -75.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds