Wall clock time and date at job start Tue Mar 31 2020 00:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00220 * 2 1 4 4 H 1.48505 * 109.46749 * 239.99611 * 3 2 1 5 5 H 1.48498 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47396 * 119.99719 * 3 2 1 7 7 C 1.37876 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00128 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00170 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.88674 * 303.88211 * 9 7 2 11 11 C 1.55163 * 111.00594 * 179.97438 * 9 7 2 12 12 C 1.54327 * 102.94044 * 206.38843 * 11 9 7 13 13 N 1.47020 * 107.27196 * 22.19243 * 12 11 9 14 14 C 1.34781 * 125.64536 * 181.01940 * 13 12 11 15 15 O 1.21496 * 120.00000 * 184.83772 * 14 13 12 16 16 C 1.48186 * 119.99985 * 4.84302 * 14 13 12 17 17 C 1.36011 * 119.76539 * 172.79414 * 16 14 13 18 18 C 1.41987 * 119.02969 * 180.02562 * 17 16 14 19 19 O 1.22192 * 120.68620 * 179.97438 * 18 17 16 20 20 C 1.41272 * 118.61912 * 359.96459 * 18 17 16 21 21 C 1.35371 * 119.44469 * 359.97438 * 20 18 17 22 22 N 1.34754 * 120.95112 * 0.02858 * 21 20 18 23 23 H 0.97003 * 119.25340 * 179.97438 * 22 21 20 24 24 C 1.47418 * 108.70571 * 1.28972 * 13 12 11 25 25 H 0.96996 * 120.00226 * 0.02562 * 1 2 3 26 26 H 0.96697 * 114.00010 * 56.11987 * 10 9 7 27 27 H 1.08998 * 110.71820 * 88.02280 * 11 9 7 28 28 H 1.09004 * 110.71601 * 324.74910 * 11 9 7 29 29 H 1.08996 * 109.88222 * 262.77407 * 12 11 9 30 30 H 1.09004 * 110.00505 * 141.68338 * 12 11 9 31 31 H 1.07998 * 120.48470 * 359.97438 * 17 16 14 32 32 H 1.07996 * 120.27847 * 180.27431 * 20 18 17 33 33 H 1.07997 * 119.52618 * 180.02562 * 21 20 18 34 34 H 1.08993 * 110.37105 * 94.47783 * 24 13 12 35 35 H 1.09001 * 110.36470 * 216.80889 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.3512 -2.5680 1.1085 11 6 2.2273 -3.7051 0.0005 12 6 1.3976 -4.8215 -0.6680 13 7 0.3462 -4.1684 -1.4615 14 6 -0.6005 -4.8008 -2.1829 15 8 -1.3680 -4.1595 -2.8727 16 6 -0.7052 -6.2782 -2.1348 17 6 -1.7489 -6.9013 -2.7448 18 6 -1.8342 -8.3175 -2.6885 19 8 -2.7591 -8.9084 -3.2255 20 6 -0.8272 -9.0291 -1.9989 21 6 0.1864 -8.3489 -1.4139 22 7 0.2477 -7.0044 -1.4796 23 1 0.9849 -6.5419 -1.0512 24 6 0.5029 -2.7074 -1.3425 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2783 -1.8352 1.1501 27 1 2.4973 -3.9827 1.0194 28 1 3.1170 -3.4809 -0.5879 29 1 0.9462 -5.4554 0.0952 30 1 2.0346 -5.4210 -1.3184 31 1 -2.5024 -6.3273 -3.2637 32 1 -0.8632 -10.1070 -1.9432 33 1 0.9571 -8.8916 -0.8867 34 1 1.0939 -2.3204 -2.1725 35 1 -0.4729 -2.2226 -1.3118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823533577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:52 Heat of formation + Delta-G solvation = -59.849427 kcal Electronic energy + Delta-G solvation = -21749.289458 eV Core-core repulsion = 18327.816845 eV Total energy + Delta-G solvation = -3421.472613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37904 -39.37653 -37.59159 -37.54616 -34.71220 -32.34388 -32.01257 -31.37122 -30.48862 -28.31517 -25.95406 -24.38430 -23.50858 -22.50663 -20.78150 -19.91589 -17.94189 -17.70029 -17.35407 -16.90267 -15.87800 -15.56923 -15.36206 -14.96157 -14.71592 -14.61163 -14.40460 -13.65314 -13.34968 -13.23603 -12.98681 -12.89404 -12.58767 -12.42973 -11.79216 -11.74903 -11.21710 -11.07571 -10.97045 -10.66665 -10.42073 -10.09702 -9.81789 -9.67273 -9.36496 -8.87121 -8.69595 -8.26843 -8.07133 -6.47293 -4.58099 0.76622 1.22326 2.61969 2.93758 3.06277 3.11785 3.18344 3.19351 3.82500 4.11128 4.20215 4.46421 4.72590 4.81373 4.86750 5.00630 5.05399 5.23842 5.31820 5.60502 5.62226 5.78204 6.04114 6.12597 6.35257 6.39835 6.46965 6.52405 6.66265 6.74040 6.96927 7.06078 7.55509 7.65698 7.75093 8.10145 8.14414 8.45328 9.11796 9.23632 10.60232 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038758 B = 0.004359 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.250763 B = 6422.521024 C = 6836.226443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.252 3.748 10 O -0.584 6.584 11 C -0.114 4.114 12 C 0.079 3.921 13 N -0.603 5.603 14 C 0.560 3.440 15 O -0.512 6.512 16 C 0.123 3.877 17 C -0.211 4.211 18 C 0.391 3.609 19 O -0.528 6.528 20 C -0.300 4.300 21 C 0.146 3.854 22 N -0.590 5.590 23 H 0.424 0.576 24 C 0.090 3.910 25 H 0.274 0.726 26 H 0.389 0.611 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.069 0.931 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 -10.871 0.744 12.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.211 3.789 10 O -0.395 6.395 11 C -0.152 4.152 12 C -0.045 4.045 13 N -0.336 5.336 14 C 0.345 3.655 15 O -0.387 6.387 16 C 0.013 3.987 17 C -0.237 4.237 18 C 0.283 3.717 19 O -0.415 6.415 20 C -0.326 4.326 21 C 0.016 3.984 22 N -0.210 5.210 23 H 0.273 0.727 24 C -0.030 4.030 25 H 0.085 0.915 26 H 0.242 0.758 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.176 0.824 32 H 0.165 0.835 33 H 0.186 0.814 34 H 0.087 0.913 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.322 -11.209 0.177 12.410 hybrid contribution 0.519 1.519 0.097 1.608 sum 5.841 -9.691 0.274 11.318 Atomic orbital electron populations 1.69526 1.06105 1.28507 1.49126 1.25084 0.95060 0.99978 0.92969 0.86396 0.79519 0.81764 0.78907 1.19908 1.20946 1.19884 1.21414 0.93744 0.89845 1.53147 0.91275 1.19611 0.85640 0.91734 0.81946 1.86052 1.51090 1.53231 1.49118 1.22654 0.97922 0.94075 1.00545 1.22317 0.90219 0.97733 0.94210 1.48808 1.28191 1.10630 1.45931 1.17665 0.81567 0.85178 0.81046 1.90830 1.42100 1.65553 1.40234 1.20538 0.91221 0.91621 0.95352 1.22952 0.99380 0.97404 1.03996 1.17271 0.85945 0.88217 0.80259 1.90783 1.34521 1.71939 1.44232 1.22405 0.99085 1.02035 1.09034 1.21799 0.98486 0.82763 0.95359 1.42524 1.25002 1.06636 1.46849 0.72676 1.23578 1.03297 0.75028 1.01106 0.91531 0.75800 0.89922 0.89685 0.91181 0.91810 0.82377 0.83462 0.81413 0.91250 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.19 10.72 55.43 0.59 -21.60 16 2 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.91 18.96 29.54 -169.99 -5.02 13.94 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.54 -12.76 8.25 -34.44 -0.28 -13.04 16 8 H 0.07 1.57 7.76 -52.48 -0.41 1.16 16 9 C 0.25 5.35 0.89 -89.50 -0.08 5.27 16 10 O -0.58 -13.47 13.19 -35.23 -0.46 -13.94 16 11 C -0.11 -1.82 6.13 -24.89 -0.15 -1.97 16 12 C 0.08 1.05 5.03 -3.06 -0.02 1.03 16 13 N -0.60 -10.59 3.32 -171.43 -0.57 -11.16 16 14 C 0.56 10.14 7.82 -12.17 -0.10 10.04 16 15 O -0.51 -11.10 16.60 5.37 0.09 -11.01 16 16 C 0.12 1.82 6.72 -82.48 -0.55 1.26 16 17 C -0.21 -3.40 9.55 -38.95 -0.37 -3.77 16 18 C 0.39 6.32 6.78 -36.99 -0.25 6.07 16 19 O -0.53 -10.48 17.89 4.74 0.08 -10.40 16 20 C -0.30 -3.50 10.00 -39.45 -0.39 -3.89 16 21 C 0.15 1.24 11.13 -17.29 -0.19 1.05 16 22 N -0.59 -6.22 4.94 -9.82 -0.05 -6.27 16 23 H 0.42 3.74 3.15 -40.90 -0.13 3.61 16 24 C 0.09 1.92 5.63 -2.41 -0.01 1.90 16 25 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 26 H 0.39 9.49 6.93 45.56 0.32 9.81 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.08 1.25 8.01 -51.93 -0.42 0.83 16 29 H 0.07 0.82 6.97 -51.93 -0.36 0.46 16 30 H 0.06 0.62 7.02 -51.93 -0.36 0.25 16 31 H 0.16 2.70 7.60 -52.49 -0.40 2.30 16 32 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.17 0.59 8.06 -52.49 -0.42 0.16 16 34 H 0.07 1.50 8.03 -51.93 -0.42 1.08 16 35 H 0.09 2.15 7.69 -51.93 -0.40 1.75 16 LS Contribution 296.49 15.07 4.47 4.47 Total: -1.00 -30.65 296.49 -6.35 -37.00 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -2.98 Total: 13.35 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.50 Total: 5.61 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.02 Total: -39.02 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.29 Total: -35.34 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.65 -6.35 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823533577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.849 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds