Wall clock time and date at job start Tue Mar 31 2020 00:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00220 * 2 1 4 4 H 1.48505 * 109.46749 * 239.99611 * 3 2 1 5 5 H 1.48498 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47396 * 119.99719 * 3 2 1 7 7 C 1.37876 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00128 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00170 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.88674 * 303.88211 * 9 7 2 11 11 C 1.55163 * 111.00594 * 179.97438 * 9 7 2 12 12 C 1.54327 * 102.94044 * 206.38843 * 11 9 7 13 13 N 1.47020 * 107.27196 * 22.19243 * 12 11 9 14 14 C 1.34781 * 125.64536 * 181.01940 * 13 12 11 15 15 O 1.21496 * 120.00000 * 184.83772 * 14 13 12 16 16 C 1.48186 * 119.99985 * 4.84302 * 14 13 12 17 17 C 1.36011 * 119.76539 * 172.79414 * 16 14 13 18 18 C 1.41987 * 119.02969 * 180.02562 * 17 16 14 19 19 O 1.22192 * 120.68620 * 179.97438 * 18 17 16 20 20 C 1.41272 * 118.61912 * 359.96459 * 18 17 16 21 21 C 1.35371 * 119.44469 * 359.97438 * 20 18 17 22 22 N 1.34754 * 120.95112 * 0.02858 * 21 20 18 23 23 H 0.97003 * 119.25340 * 179.97438 * 22 21 20 24 24 C 1.47418 * 108.70571 * 1.28972 * 13 12 11 25 25 H 0.96996 * 120.00226 * 0.02562 * 1 2 3 26 26 H 0.96697 * 114.00010 * 56.11987 * 10 9 7 27 27 H 1.08998 * 110.71820 * 88.02280 * 11 9 7 28 28 H 1.09004 * 110.71601 * 324.74910 * 11 9 7 29 29 H 1.08996 * 109.88222 * 262.77407 * 12 11 9 30 30 H 1.09004 * 110.00505 * 141.68338 * 12 11 9 31 31 H 1.07998 * 120.48470 * 359.97438 * 17 16 14 32 32 H 1.07996 * 120.27847 * 180.27431 * 20 18 17 33 33 H 1.07997 * 119.52618 * 180.02562 * 21 20 18 34 34 H 1.08993 * 110.37105 * 94.47783 * 24 13 12 35 35 H 1.09001 * 110.36470 * 216.80889 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.3512 -2.5680 1.1085 11 6 2.2273 -3.7051 0.0005 12 6 1.3976 -4.8215 -0.6680 13 7 0.3462 -4.1684 -1.4615 14 6 -0.6005 -4.8008 -2.1829 15 8 -1.3680 -4.1595 -2.8727 16 6 -0.7052 -6.2782 -2.1348 17 6 -1.7489 -6.9013 -2.7448 18 6 -1.8342 -8.3175 -2.6885 19 8 -2.7591 -8.9084 -3.2255 20 6 -0.8272 -9.0291 -1.9989 21 6 0.1864 -8.3489 -1.4139 22 7 0.2477 -7.0044 -1.4796 23 1 0.9849 -6.5419 -1.0512 24 6 0.5029 -2.7074 -1.3425 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2783 -1.8352 1.1501 27 1 2.4973 -3.9827 1.0194 28 1 3.1170 -3.4809 -0.5879 29 1 0.9462 -5.4554 0.0952 30 1 2.0346 -5.4210 -1.3184 31 1 -2.5024 -6.3273 -3.2637 32 1 -0.8632 -10.1070 -1.9432 33 1 0.9571 -8.8916 -0.8867 34 1 1.0939 -2.3204 -2.1725 35 1 -0.4729 -2.2226 -1.3118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823533577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:52 Heat of formation + Delta-G solvation = -83.845792 kcal Electronic energy + Delta-G solvation = -21750.330018 eV Core-core repulsion = 18327.816845 eV Total energy + Delta-G solvation = -3422.513174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.56082 -40.72519 -39.13691 -38.75930 -36.31718 -34.17147 -33.14109 -32.56590 -31.86769 -29.79767 -27.56629 -25.80795 -24.51929 -23.77320 -22.05799 -21.48558 -19.27324 -19.00425 -18.81709 -18.07603 -17.22465 -17.14555 -16.83077 -16.42819 -15.91146 -15.90324 -15.70448 -14.98787 -14.92739 -14.77359 -14.18167 -14.08922 -13.77907 -13.70488 -13.49502 -13.27568 -12.83758 -12.57241 -12.37107 -12.29610 -12.17460 -11.58757 -11.28459 -10.87144 -10.67600 -10.59864 -10.38210 -9.75725 -9.21881 -8.28634 -6.45088 -0.49781 0.34021 1.41108 1.45712 1.47954 1.53148 1.58419 1.82102 2.37494 2.69161 2.96995 3.00949 3.55421 3.70738 3.82791 3.98623 4.00769 4.07050 4.12696 4.27250 4.39358 4.60478 4.64274 4.88829 4.98746 5.00124 5.11211 5.32029 5.38346 5.42334 5.58703 5.74278 5.91037 5.99519 6.25327 6.62608 6.70660 6.96533 7.27660 7.35769 8.76604 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038758 B = 0.004359 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.250763 B = 6422.521024 C = 6836.226443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.027 3.973 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.232 3.768 10 O -0.589 6.589 11 C -0.107 4.107 12 C 0.071 3.929 13 N -0.602 5.602 14 C 0.554 3.446 15 O -0.562 6.562 16 C 0.141 3.859 17 C -0.233 4.233 18 C 0.373 3.627 19 O -0.590 6.590 20 C -0.315 4.315 21 C 0.186 3.814 22 N -0.567 5.567 23 H 0.437 0.563 24 C 0.101 3.899 25 H 0.270 0.730 26 H 0.378 0.622 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.169 0.831 33 H 0.243 0.757 34 H 0.058 0.942 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 -13.098 2.321 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.094 0.906 9 C 0.191 3.809 10 O -0.399 6.399 11 C -0.144 4.144 12 C -0.050 4.050 13 N -0.333 5.333 14 C 0.342 3.658 15 O -0.441 6.441 16 C 0.028 3.972 17 C -0.260 4.260 18 C 0.271 3.729 19 O -0.482 6.482 20 C -0.339 4.339 21 C 0.056 3.944 22 N -0.188 5.188 23 H 0.289 0.711 24 C -0.022 4.022 25 H 0.080 0.920 26 H 0.229 0.771 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.187 0.813 33 H 0.259 0.741 34 H 0.076 0.924 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.088 -13.460 1.800 16.341 hybrid contribution -0.530 2.277 -0.339 2.362 sum 8.558 -11.183 1.461 14.158 Atomic orbital electron populations 1.69650 1.07265 1.28650 1.50343 1.25795 0.95625 1.02861 0.93066 0.85541 0.78279 0.78442 0.79002 1.19481 1.21668 1.19310 1.21840 0.94303 0.91007 1.52188 0.90571 1.19907 0.86232 0.93629 0.81120 1.86041 1.51168 1.52642 1.50016 1.22651 0.97320 0.92139 1.02324 1.22694 0.89490 0.97443 0.95356 1.48787 1.29048 1.09449 1.46022 1.18119 0.80875 0.86521 0.80324 1.90805 1.43906 1.67013 1.42338 1.19868 0.91888 0.89672 0.95739 1.22835 0.99896 0.97973 1.05263 1.17787 0.86653 0.88059 0.80436 1.90752 1.37222 1.72545 1.47694 1.22437 0.98758 1.03158 1.09513 1.22767 0.98133 0.81147 0.92377 1.42617 1.23644 1.07626 1.44882 0.71095 1.23159 1.00666 0.77234 1.01122 0.92020 0.77072 0.88266 0.88088 0.88488 0.86485 0.85133 0.81327 0.74111 0.92360 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.13 10.72 21.45 0.23 -46.90 16 2 C 0.03 1.32 5.30 84.65 0.45 1.77 16 3 Si 0.96 38.89 29.54 68.60 2.03 40.91 16 4 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.56 -25.71 8.25 25.60 0.21 -25.50 16 8 H 0.08 3.33 7.76 -2.91 -0.02 3.31 16 9 C 0.23 9.64 0.89 -10.07 -0.01 9.63 16 10 O -0.59 -27.05 13.19 -148.98 -1.97 -29.01 16 11 C -0.11 -2.98 6.13 31.79 0.19 -2.78 16 12 C 0.07 1.55 5.03 86.73 0.44 1.99 16 13 N -0.60 -20.21 3.32 -814.59 -2.71 -22.92 16 14 C 0.55 19.98 7.82 86.89 0.68 20.65 16 15 O -0.56 -25.69 16.60 -3.70 -0.06 -25.75 16 16 C 0.14 3.91 6.72 40.54 0.27 4.18 16 17 C -0.23 -7.67 9.55 22.68 0.22 -7.46 16 18 C 0.37 12.07 6.78 23.95 0.16 12.23 16 19 O -0.59 -24.55 17.89 -5.95 -0.11 -24.65 16 20 C -0.31 -6.17 10.00 22.35 0.22 -5.94 16 21 C 0.19 1.90 11.13 83.58 0.93 2.83 16 22 N -0.57 -8.85 4.94 -184.99 -0.91 -9.77 16 23 H 0.44 4.63 3.15 -92.79 -0.29 4.34 16 24 C 0.10 4.31 5.63 86.94 0.49 4.80 16 25 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 26 H 0.38 19.01 6.93 -74.06 -0.51 18.49 16 27 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.10 2.51 8.01 -2.39 -0.02 2.49 16 29 H 0.10 1.65 6.97 -2.39 -0.02 1.63 16 30 H 0.12 1.39 7.02 -2.38 -0.02 1.38 16 31 H 0.13 4.92 7.60 -2.91 -0.02 4.90 16 32 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.24 -0.82 8.06 -2.91 -0.02 -0.85 16 34 H 0.06 2.57 8.03 -2.39 -0.02 2.55 16 35 H 0.04 2.27 7.69 -2.39 -0.02 2.25 16 Total: -1.00 -75.52 296.49 1.10 -74.42 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.34 Total: 27.28 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 4.26 Total: 16.40 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -3.39 Total: -79.59 kcal Atomic # 8 Polarization: -77.29 SS G_CDS: -2.13 Total: -79.42 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.91 kcal Total: -75.52 1.10 -74.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823533577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.426 kcal (2) G-P(sol) polarization free energy of solvation -75.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds