Wall clock time and date at job start Mon Mar 30 2020 23:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00306 * 2 1 4 4 H 1.48507 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47348 * 299.99980 * 3 2 1 6 6 H 1.48501 * 109.47273 * 60.00329 * 3 2 1 7 7 C 1.37878 * 119.99412 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99638 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00378 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64366 * 298.30078 * 9 7 2 11 11 C 1.54594 * 110.72351 * 61.45292 * 9 7 2 12 12 C 1.53997 * 105.14092 * 140.32128 * 11 9 7 13 13 N 1.47904 * 107.05663 * 1.21985 * 12 11 9 14 14 C 1.39665 * 111.00020 * 214.15794 * 13 12 11 15 15 C 1.38917 * 120.07596 * 240.10707 * 14 13 12 16 16 C 1.38104 * 119.92415 * 180.23573 * 15 14 13 17 17 C 1.38286 * 120.07376 * 359.51055 * 16 15 14 18 18 N 1.48003 * 119.92516 * 180.25653 * 17 16 15 19 19 O 1.21800 * 120.00220 * 0.02562 * 18 17 16 20 20 O 1.21803 * 120.00417 * 180.02562 * 18 17 16 21 21 C 1.38289 * 120.15212 * 0.28357 * 17 16 15 22 22 C 1.38098 * 120.07122 * 359.95138 * 21 17 16 23 23 C 1.48533 * 105.82113 * 334.67678 * 13 12 11 24 24 H 0.97001 * 119.99560 * 359.97438 * 1 2 3 25 25 H 0.96703 * 114.00155 * 61.70170 * 10 9 7 26 26 H 1.08998 * 110.31134 * 21.40074 * 11 9 7 27 27 H 1.09000 * 110.30829 * 259.23334 * 11 9 7 28 28 H 1.09007 * 109.91472 * 241.87424 * 12 11 9 29 29 H 1.08996 * 109.92129 * 120.57530 * 12 11 9 30 30 H 1.07998 * 120.03509 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.96506 * 179.79598 * 16 15 14 32 32 H 1.07997 * 119.96313 * 179.97438 * 21 17 16 33 33 H 1.08007 * 120.03458 * 180.02562 * 22 21 17 34 34 H 1.09003 * 110.66558 * 157.63874 * 23 13 12 35 35 H 1.09004 * 110.66701 * 280.76941 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4504 -2.6187 1.1772 11 6 0.3785 -2.6271 -1.2704 12 6 0.5060 -4.1007 -1.6991 13 7 1.3762 -4.7676 -0.7065 14 6 2.1573 -5.7560 -1.3095 15 6 2.0480 -7.0779 -0.8968 16 6 2.8254 -8.0520 -1.4919 17 6 3.7045 -7.7142 -2.5046 18 7 4.5319 -8.7616 -3.1439 19 8 4.4378 -9.9196 -2.7785 20 8 5.3071 -8.4656 -4.0357 21 6 3.8127 -6.3998 -2.9208 22 6 3.0418 -5.4201 -2.3266 23 6 2.2267 -3.6958 -0.1286 24 1 -0.4849 0.8401 0.0004 25 1 -0.2278 -1.9347 1.2629 26 1 0.7543 -1.9708 -2.0553 27 1 -0.6601 -2.3883 -1.0414 28 1 0.9578 -4.1615 -2.6893 29 1 -0.4770 -4.5715 -1.7070 30 1 1.3584 -7.3431 -0.1091 31 1 2.7434 -9.0794 -1.1693 32 1 4.5006 -6.1394 -3.7116 33 1 3.1265 -4.3939 -2.6524 34 1 2.6047 -3.9905 0.8505 35 1 3.0485 -3.4517 -0.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:44 Heat of formation + Delta-G solvation = -15.282514 kcal Electronic energy + Delta-G solvation = -21323.831643 eV Core-core repulsion = 17904.291596 eV Total energy + Delta-G solvation = -3419.540047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.19127 -40.25917 -37.96291 -36.58647 -35.04256 -32.27987 -31.74651 -31.42638 -28.98856 -28.33591 -25.94641 -24.60131 -23.34464 -22.24099 -20.54952 -19.78205 -19.36167 -18.67971 -17.54826 -17.49869 -16.48743 -15.78549 -15.09272 -14.94995 -14.83568 -14.06863 -13.84984 -13.64387 -13.56852 -12.86969 -12.50891 -12.18738 -11.87867 -11.72865 -11.56621 -11.45997 -11.26627 -11.18160 -11.16934 -10.90522 -10.67792 -10.52909 -10.11179 -9.51585 -9.47329 -9.15510 -8.75286 -8.40752 -8.22035 -6.36738 -4.46028 -0.20280 0.88177 1.30721 1.39729 3.11388 3.17553 3.21298 3.24379 3.95894 4.19968 4.33765 4.39669 4.78429 4.90249 4.92730 5.13421 5.28515 5.53582 5.56250 5.62795 5.64740 5.68461 5.85137 6.06780 6.13074 6.16013 6.29089 6.42281 6.56937 6.76310 6.98941 7.23880 7.28910 7.44329 7.62086 7.64632 7.96375 8.56891 9.23661 9.36426 10.70363 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033611 B = 0.003943 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.869757 B = 7100.140783 C = 7555.679166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.259 3.741 10 O -0.579 6.579 11 C -0.130 4.130 12 C 0.039 3.961 13 N -0.492 5.492 14 C 0.160 3.840 15 C -0.102 4.102 16 C -0.048 4.048 17 C -0.063 4.063 18 N 0.035 4.965 19 O -0.169 6.169 20 O -0.170 6.170 21 C -0.043 4.043 22 C -0.155 4.155 23 C 0.055 3.945 24 H 0.268 0.732 25 H 0.380 0.620 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.080 0.920 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 -9.729 -4.177 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.219 3.781 10 O -0.388 6.388 11 C -0.169 4.169 12 C -0.087 4.087 13 N -0.214 5.214 14 C 0.065 3.935 15 C -0.122 4.122 16 C -0.068 4.068 17 C -0.147 4.147 18 N 0.552 4.448 19 O -0.384 6.384 20 O -0.385 6.385 21 C -0.063 4.063 22 C -0.176 4.176 23 C -0.069 4.069 24 H 0.078 0.922 25 H 0.230 0.770 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.098 0.902 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.914 -9.871 -3.371 10.605 hybrid contribution 0.755 1.552 -0.996 1.993 sum 2.670 -8.318 -4.367 9.767 Atomic orbital electron populations 1.69727 1.05953 1.27589 1.49849 1.24990 0.94999 0.99514 0.93473 0.86407 0.80130 0.82883 0.77825 1.19639 1.20813 1.20667 1.21583 0.93634 0.90513 1.52338 0.91930 1.19309 0.86538 0.90115 0.82170 1.86135 1.51626 1.56277 1.44737 1.23002 1.02548 0.90689 1.00666 1.23127 0.96459 0.97057 0.92035 1.62713 1.18093 1.11569 1.28976 1.19844 0.90064 0.93885 0.89756 1.21149 0.99652 0.90588 1.00778 1.20983 0.91936 1.01781 0.92073 1.21083 1.02053 0.88392 1.03146 1.43640 0.99734 1.01975 0.99483 1.94513 1.72804 1.04035 1.67050 1.94523 1.33295 1.87722 1.22918 1.20893 0.97505 0.89511 0.98414 1.21942 0.97319 1.00501 0.97816 1.23447 0.94809 0.89747 0.98928 0.92214 0.77033 0.91502 0.90877 0.94280 0.90925 0.82868 0.82942 0.83233 0.83399 0.90151 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.32 11.00 55.43 0.61 -21.71 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -13.43 8.14 -34.44 -0.28 -13.71 16 8 H 0.06 1.55 7.78 -52.48 -0.41 1.14 16 9 C 0.26 5.86 0.95 -89.92 -0.09 5.77 16 10 O -0.58 -14.10 13.09 -35.23 -0.46 -14.56 16 11 C -0.13 -2.68 5.26 -25.37 -0.13 -2.82 16 12 C 0.04 0.66 6.51 -2.75 -0.02 0.64 16 13 N -0.49 -8.35 5.28 -167.16 -0.88 -9.23 16 14 C 0.16 2.27 4.85 -83.79 -0.41 1.87 16 15 C -0.10 -1.24 9.97 -39.38 -0.39 -1.63 16 16 C -0.05 -0.55 9.55 -39.61 -0.38 -0.93 16 17 C -0.06 -0.81 6.85 -79.92 -0.55 -1.36 16 18 N 0.03 0.50 4.45 33.98 0.15 0.65 16 19 O -0.17 -2.48 18.44 -29.46 -0.54 -3.02 16 20 O -0.17 -2.54 18.44 -29.46 -0.54 -3.08 16 21 C -0.04 -0.53 9.55 -39.61 -0.38 -0.90 16 22 C -0.15 -2.01 7.90 -39.38 -0.31 -2.32 16 23 C 0.06 1.07 5.55 -1.90 -0.01 1.06 16 24 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 25 H 0.38 9.36 7.46 45.56 0.34 9.70 16 26 H 0.07 1.44 7.84 -51.93 -0.41 1.03 16 27 H 0.07 1.60 7.98 -51.93 -0.41 1.19 16 28 H 0.04 0.60 6.69 -51.92 -0.35 0.25 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.15 1.45 7.60 -52.49 -0.40 1.05 16 32 H 0.15 1.58 7.60 -52.49 -0.40 1.18 16 33 H 0.15 1.87 7.05 -52.48 -0.37 1.50 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.06 1.02 6.55 -51.93 -0.34 0.68 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -26.15 301.12 -8.34 -34.48 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.15 Total: 10.09 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -3.04 Total: -12.62 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: -0.12 Total: -30.30 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.55 Total: -20.66 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.15 -8.34 -34.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.200 kcal (2) G-P(sol) polarization free energy of solvation -26.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds