Wall clock time and date at job start Mon Mar 30 2020 23:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00306 * 2 1 4 4 H 1.48507 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47348 * 299.99980 * 3 2 1 6 6 H 1.48501 * 109.47273 * 60.00329 * 3 2 1 7 7 C 1.37878 * 119.99412 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99638 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00378 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64366 * 298.30078 * 9 7 2 11 11 C 1.54594 * 110.72351 * 61.45292 * 9 7 2 12 12 C 1.53997 * 105.14092 * 140.32128 * 11 9 7 13 13 N 1.47904 * 107.05663 * 1.21985 * 12 11 9 14 14 C 1.39665 * 111.00020 * 214.15794 * 13 12 11 15 15 C 1.38917 * 120.07596 * 240.10707 * 14 13 12 16 16 C 1.38104 * 119.92415 * 180.23573 * 15 14 13 17 17 C 1.38286 * 120.07376 * 359.51055 * 16 15 14 18 18 N 1.48003 * 119.92516 * 180.25653 * 17 16 15 19 19 O 1.21800 * 120.00220 * 0.02562 * 18 17 16 20 20 O 1.21803 * 120.00417 * 180.02562 * 18 17 16 21 21 C 1.38289 * 120.15212 * 0.28357 * 17 16 15 22 22 C 1.38098 * 120.07122 * 359.95138 * 21 17 16 23 23 C 1.48533 * 105.82113 * 334.67678 * 13 12 11 24 24 H 0.97001 * 119.99560 * 359.97438 * 1 2 3 25 25 H 0.96703 * 114.00155 * 61.70170 * 10 9 7 26 26 H 1.08998 * 110.31134 * 21.40074 * 11 9 7 27 27 H 1.09000 * 110.30829 * 259.23334 * 11 9 7 28 28 H 1.09007 * 109.91472 * 241.87424 * 12 11 9 29 29 H 1.08996 * 109.92129 * 120.57530 * 12 11 9 30 30 H 1.07998 * 120.03509 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.96506 * 179.79598 * 16 15 14 32 32 H 1.07997 * 119.96313 * 179.97438 * 21 17 16 33 33 H 1.08007 * 120.03458 * 180.02562 * 22 21 17 34 34 H 1.09003 * 110.66558 * 157.63874 * 23 13 12 35 35 H 1.09004 * 110.66701 * 280.76941 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4504 -2.6187 1.1772 11 6 0.3785 -2.6271 -1.2704 12 6 0.5060 -4.1007 -1.6991 13 7 1.3762 -4.7676 -0.7065 14 6 2.1573 -5.7560 -1.3095 15 6 2.0480 -7.0779 -0.8968 16 6 2.8254 -8.0520 -1.4919 17 6 3.7045 -7.7142 -2.5046 18 7 4.5319 -8.7616 -3.1439 19 8 4.4378 -9.9196 -2.7785 20 8 5.3071 -8.4656 -4.0357 21 6 3.8127 -6.3998 -2.9208 22 6 3.0418 -5.4201 -2.3266 23 6 2.2267 -3.6958 -0.1286 24 1 -0.4849 0.8401 0.0004 25 1 -0.2278 -1.9347 1.2629 26 1 0.7543 -1.9708 -2.0553 27 1 -0.6601 -2.3883 -1.0414 28 1 0.9578 -4.1615 -2.6893 29 1 -0.4770 -4.5715 -1.7070 30 1 1.3584 -7.3431 -0.1091 31 1 2.7434 -9.0794 -1.1693 32 1 4.5006 -6.1394 -3.7116 33 1 3.1265 -4.3939 -2.6524 34 1 2.6047 -3.9905 0.8505 35 1 3.0485 -3.4517 -0.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:44 Heat of formation + Delta-G solvation = -31.106199 kcal Electronic energy + Delta-G solvation = -21324.517809 eV Core-core repulsion = 17904.291596 eV Total energy + Delta-G solvation = -3420.226213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.27173 -41.45482 -39.32450 -37.69210 -36.63293 -34.18296 -33.01473 -32.44465 -30.35271 -29.93890 -27.31284 -26.14497 -24.36236 -23.42412 -21.86492 -21.47565 -20.39757 -19.77074 -19.18515 -18.62751 -17.91009 -17.10861 -16.76200 -16.34850 -15.97094 -15.54182 -15.01939 -14.93458 -14.83816 -14.18648 -14.00928 -13.71751 -13.34096 -13.24344 -12.90518 -12.78908 -12.65480 -12.56514 -12.38995 -12.31112 -12.29118 -12.23242 -11.81905 -11.18420 -10.64571 -10.43173 -10.30487 -10.13516 -9.65164 -8.24136 -6.39612 -1.28164 -0.06396 0.22675 0.35002 1.38667 1.43954 1.52493 2.17540 2.36525 2.73341 3.02568 3.37697 3.47716 3.71151 3.84657 3.91466 4.05407 4.18592 4.24282 4.33310 4.49465 4.60003 4.64759 4.70216 4.79252 4.99101 5.04815 5.10552 5.20817 5.36300 5.38228 5.52807 5.59743 5.79092 6.10949 6.22752 6.48883 6.66554 7.32826 7.45114 8.81332 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033611 B = 0.003943 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.869757 B = 7100.140783 C = 7555.679166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.035 3.965 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.241 3.759 10 O -0.589 6.589 11 C -0.121 4.121 12 C 0.046 3.954 13 N -0.493 5.493 14 C 0.140 3.860 15 C -0.094 4.094 16 C -0.036 4.036 17 C -0.069 4.069 18 N 0.034 4.966 19 O -0.172 6.172 20 O -0.187 6.187 21 C -0.038 4.038 22 C -0.153 4.153 23 C 0.064 3.936 24 H 0.269 0.731 25 H 0.374 0.626 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.168 0.832 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.150 0.850 34 H 0.072 0.928 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -10.695 -4.660 12.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.167 4.167 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.601 4.601 8 H 0.075 0.925 9 C 0.201 3.799 10 O -0.397 6.397 11 C -0.160 4.160 12 C -0.079 4.079 13 N -0.215 5.215 14 C 0.044 3.956 15 C -0.113 4.113 16 C -0.056 4.056 17 C -0.152 4.152 18 N 0.549 4.451 19 O -0.387 6.387 20 O -0.398 6.398 21 C -0.058 4.058 22 C -0.174 4.174 23 C -0.061 4.061 24 H 0.078 0.922 25 H 0.222 0.778 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.186 0.814 31 H 0.193 0.807 32 H 0.182 0.818 33 H 0.168 0.832 34 H 0.090 0.910 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.422 -10.849 -3.879 11.773 hybrid contribution 0.603 1.807 -0.827 2.077 sum 3.025 -9.042 -4.706 10.633 Atomic orbital electron populations 1.69806 1.06752 1.28123 1.50082 1.25613 0.95728 1.02040 0.93290 0.85555 0.79021 0.79662 0.77641 1.19546 1.20436 1.20777 1.21871 0.93613 0.91983 1.52612 0.92536 1.19565 0.87239 0.90874 0.82254 1.86127 1.51645 1.55987 1.45935 1.22760 1.00689 0.93154 0.99382 1.23029 0.97487 0.94482 0.92902 1.62582 1.18170 1.11160 1.29539 1.19899 0.90903 0.93915 0.90837 1.21254 0.99618 0.89700 1.00741 1.21191 0.90684 1.02700 0.90984 1.21265 1.02188 0.88249 1.03548 1.43830 0.99710 1.02164 0.99369 1.94504 1.72776 1.04485 1.66952 1.94525 1.33985 1.87783 1.23535 1.20996 0.97281 0.89051 0.98424 1.21887 0.97188 1.00765 0.97557 1.23234 0.94452 0.89361 0.99059 0.92169 0.77760 0.92950 0.92864 0.92273 0.89812 0.81419 0.80713 0.81835 0.83244 0.91003 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.93 11.00 21.45 0.24 -45.69 16 2 C 0.03 1.71 5.28 84.65 0.45 2.16 16 3 Si 0.96 39.96 29.54 68.60 2.03 41.99 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.56 -28.07 8.14 25.60 0.21 -27.86 16 8 H 0.06 2.81 7.78 -2.91 -0.02 2.78 16 9 C 0.24 10.94 0.95 -10.34 -0.01 10.93 16 10 O -0.59 -29.07 13.09 -148.98 -1.95 -31.02 16 11 C -0.12 -5.00 5.26 31.47 0.17 -4.83 16 12 C 0.05 1.51 6.51 86.45 0.56 2.07 16 13 N -0.49 -15.97 5.28 -682.76 -3.60 -19.57 16 14 C 0.14 3.64 4.85 38.22 0.19 3.82 16 15 C -0.09 -2.01 9.97 22.40 0.22 -1.78 16 16 C -0.04 -0.71 9.55 22.25 0.21 -0.50 16 17 C -0.07 -1.59 6.85 36.40 0.25 -1.34 16 18 N 0.03 0.91 4.45 -46.42 -0.21 0.71 16 19 O -0.17 -4.65 18.44 18.89 0.35 -4.30 16 20 O -0.19 -5.28 18.44 18.88 0.35 -4.93 16 21 C -0.04 -0.82 9.55 22.25 0.21 -0.61 16 22 C -0.15 -3.62 7.90 22.40 0.18 -3.44 16 23 C 0.06 2.44 5.55 86.65 0.48 2.92 16 24 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 25 H 0.37 18.91 7.46 -74.05 -0.55 18.35 16 26 H 0.05 2.26 7.84 -2.39 -0.02 2.25 16 27 H 0.05 2.37 7.98 -2.39 -0.02 2.35 16 28 H 0.06 1.69 6.69 -2.38 -0.02 1.67 16 29 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.18 2.67 7.60 -2.91 -0.02 2.65 16 32 H 0.16 3.07 7.60 -2.91 -0.02 3.05 16 33 H 0.15 3.48 7.05 -2.91 -0.02 3.46 16 34 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.06 2.29 6.55 -2.38 -0.02 2.28 16 Total: -1.00 -54.96 301.12 0.89 -54.07 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.58 Total: 27.22 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 3.11 Total: -18.46 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -3.57 Total: -64.56 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -1.25 Total: -40.26 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -54.96 0.89 -54.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.963 kcal (2) G-P(sol) polarization free energy of solvation -54.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds