Wall clock time and date at job start Mon Mar 30 2020 23:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00086 * 2 1 4 4 H 1.48502 * 109.46842 * 85.03302 * 3 2 1 5 5 H 1.48500 * 109.47181 * 205.02914 * 3 2 1 6 6 H 1.48500 * 109.46871 * 325.03371 * 3 2 1 7 7 C 1.37875 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00653 * 185.80697 * 7 2 1 9 9 C 1.50702 * 119.99770 * 5.79573 * 7 2 1 10 10 O 1.42904 * 110.27339 * 59.58720 * 9 7 2 11 11 C 1.54590 * 110.31313 * 297.38806 * 9 7 2 12 12 C 1.54941 * 102.92266 * 219.12859 * 11 9 7 13 13 N 1.48537 * 103.22762 * 37.41041 * 12 11 9 14 14 C 1.39672 * 110.99747 * 200.28374 * 13 12 11 15 15 C 1.38916 * 120.07127 * 242.86976 * 14 13 12 16 16 C 1.38102 * 119.92106 * 179.72369 * 15 14 13 17 17 C 1.38279 * 120.07811 * 0.55390 * 16 15 14 18 18 N 1.48006 * 119.92934 * 179.74735 * 17 16 15 19 19 O 1.21791 * 120.00500 * 179.97438 * 18 17 16 20 20 O 1.21798 * 119.99529 * 359.97243 * 18 17 16 21 21 C 1.38287 * 120.15016 * 359.71751 * 17 16 15 22 22 C 1.38104 * 120.07292 * 0.02562 * 21 17 16 23 23 C 1.47902 * 105.81933 * 320.79436 * 13 12 11 24 24 H 0.97001 * 120.00378 * 359.97438 * 1 2 3 25 25 H 0.96705 * 113.99265 * 300.69570 * 10 9 7 26 26 H 1.09001 * 110.72455 * 337.48285 * 11 9 7 27 27 H 1.08998 * 110.72458 * 100.77024 * 11 9 7 28 28 H 1.09007 * 110.66379 * 278.97790 * 12 11 9 29 29 H 1.08998 * 110.81151 * 155.91904 * 12 11 9 30 30 H 1.08002 * 120.03661 * 359.97438 * 15 14 13 31 31 H 1.08008 * 119.95905 * 180.29477 * 16 15 14 32 32 H 1.08002 * 119.96473 * 180.02562 * 21 17 16 33 33 H 1.07998 * 120.04099 * 180.02562 * 22 21 17 34 34 H 1.08997 * 109.92047 * 265.97403 * 23 13 12 35 35 H 1.08998 * 110.07962 * 144.77190 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3917 2.1070 1.3949 5 1 3.5953 1.4121 -0.5923 6 1 1.5030 2.6201 -0.8024 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1966 0.0941 9 6 1.2568 -2.4957 -0.1329 10 8 0.5260 -2.5244 -1.3606 11 6 0.3019 -2.6905 1.0671 12 6 0.4285 -4.2051 1.3684 13 7 1.8675 -4.4810 1.1245 14 6 2.0852 -5.8424 0.9012 15 6 2.8791 -6.5731 1.7761 16 6 3.0877 -7.9203 1.5555 17 6 2.5166 -8.5396 0.4589 18 7 2.7469 -9.9824 0.2225 19 8 2.2442 -10.5293 -0.7426 20 8 3.4392 -10.6228 0.9933 21 6 1.7303 -7.8140 -0.4172 22 6 1.5133 -6.4675 -0.1996 23 6 2.2349 -3.6833 -0.0655 24 1 -0.4851 0.8400 0.0004 25 1 -0.1213 -1.8114 -1.4497 26 1 0.6302 -2.0986 1.9214 27 1 -0.7215 -2.4364 0.7909 28 1 -0.1952 -4.7859 0.6888 29 1 0.1663 -4.4170 2.4049 30 1 3.3294 -6.0890 2.6301 31 1 3.7010 -8.4901 2.2380 32 1 1.2854 -8.3007 -1.2725 33 1 0.8988 -5.9015 -0.8840 34 1 2.1417 -4.2927 -0.9644 35 1 3.2571 -3.3173 0.0304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:47 Heat of formation + Delta-G solvation = -15.201052 kcal Electronic energy + Delta-G solvation = -21335.300376 eV Core-core repulsion = 17915.763862 eV Total energy + Delta-G solvation = -3419.536514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.18874 -40.26540 -37.99038 -36.58364 -35.13128 -32.28412 -31.74426 -31.45210 -28.91635 -28.35535 -25.88660 -24.60518 -23.31700 -22.22933 -20.68909 -19.70250 -19.35081 -18.67671 -17.54500 -17.27666 -16.96553 -15.73924 -15.05636 -14.96107 -14.42360 -14.31211 -13.95248 -13.75734 -13.44258 -12.76914 -12.48701 -12.21801 -11.81343 -11.73285 -11.58457 -11.47918 -11.21380 -11.17719 -11.12903 -10.89276 -10.64053 -10.56461 -10.18285 -9.56269 -9.44125 -9.13451 -8.77897 -8.41212 -8.28328 -6.33931 -4.41028 -0.19819 0.89122 1.31126 1.40255 3.14760 3.18219 3.23507 3.27549 3.94099 4.21796 4.34900 4.40560 4.79596 4.90216 4.95604 5.14229 5.29041 5.54787 5.57572 5.65345 5.69065 5.79098 5.88604 5.99113 6.10323 6.18081 6.24831 6.42866 6.64670 6.74539 6.93065 7.29216 7.36523 7.45382 7.62722 7.67010 7.96468 8.60484 9.20342 9.29977 10.72942 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043087 B = 0.003739 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.695505 B = 7487.614481 C = 7630.571788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.244 3.756 10 O -0.593 6.593 11 C -0.114 4.114 12 C 0.034 3.966 13 N -0.491 5.491 14 C 0.159 3.841 15 C -0.103 4.103 16 C -0.049 4.049 17 C -0.063 4.063 18 N 0.035 4.965 19 O -0.170 6.170 20 O -0.170 6.170 21 C -0.044 4.044 22 C -0.152 4.152 23 C 0.054 3.946 24 H 0.267 0.733 25 H 0.383 0.617 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.047 0.953 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -10.388 2.632 10.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.204 3.796 10 O -0.402 6.402 11 C -0.153 4.153 12 C -0.091 4.091 13 N -0.213 5.213 14 C 0.064 3.936 15 C -0.122 4.122 16 C -0.068 4.068 17 C -0.146 4.146 18 N 0.552 4.448 19 O -0.384 6.384 20 O -0.384 6.384 21 C -0.064 4.064 22 C -0.173 4.173 23 C -0.071 4.071 24 H 0.077 0.923 25 H 0.234 0.766 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.065 0.935 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.038 -9.934 3.082 10.599 hybrid contribution -0.343 0.824 -0.612 1.082 sum 1.696 -9.110 2.470 9.590 Atomic orbital electron populations 1.69743 1.05933 1.27589 1.50230 1.25004 0.95011 0.99565 0.93605 0.86443 0.80013 0.82661 0.78119 1.20554 1.19696 1.20989 1.21626 0.94027 0.90527 1.51004 0.91845 1.19325 0.87303 0.91474 0.81456 1.86094 1.57293 1.55800 1.41038 1.23024 1.01173 0.90057 1.01058 1.23529 0.85116 1.00108 1.00309 1.62729 1.20050 1.00926 1.37612 1.19821 0.91042 0.91568 0.91212 1.21128 0.98694 0.91618 1.00780 1.20973 0.96402 0.94966 0.94496 1.21086 1.10187 0.80594 1.02769 1.43636 0.98265 1.03508 0.99418 1.94522 1.51177 1.72168 1.20569 1.94512 1.36032 1.64767 1.43108 1.20902 0.93971 0.93844 0.97652 1.21970 1.01756 0.93771 0.99810 1.23101 1.01101 0.94524 0.88373 0.92269 0.76648 0.90779 0.90907 0.93884 0.90850 0.82860 0.82940 0.83230 0.83237 0.93499 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.43 10.91 55.43 0.60 -21.82 16 2 C 0.07 1.76 5.24 -17.82 -0.09 1.67 16 3 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -13.36 8.10 -34.44 -0.28 -13.63 16 8 H 0.06 1.59 7.35 -52.49 -0.39 1.21 16 9 C 0.24 5.50 0.99 -90.41 -0.09 5.41 16 10 O -0.59 -13.94 12.93 -35.23 -0.46 -14.39 16 11 C -0.11 -2.38 5.27 -24.87 -0.13 -2.51 16 12 C 0.03 0.58 6.43 -1.89 -0.01 0.57 16 13 N -0.49 -8.27 5.28 -167.15 -0.88 -9.15 16 14 C 0.16 2.27 4.86 -83.79 -0.41 1.86 16 15 C -0.10 -1.23 9.97 -39.38 -0.39 -1.62 16 16 C -0.05 -0.56 9.55 -39.62 -0.38 -0.93 16 17 C -0.06 -0.82 6.85 -79.92 -0.55 -1.36 16 18 N 0.03 0.50 4.45 33.98 0.15 0.65 16 19 O -0.17 -2.55 18.44 -29.46 -0.54 -3.09 16 20 O -0.17 -2.49 18.44 -29.46 -0.54 -3.03 16 21 C -0.04 -0.54 9.55 -39.61 -0.38 -0.92 16 22 C -0.15 -2.04 7.90 -39.38 -0.31 -2.35 16 23 C 0.05 1.05 5.96 -2.75 -0.02 1.04 16 24 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 25 H 0.38 9.19 7.43 45.56 0.34 9.53 16 26 H 0.07 1.67 7.86 -51.93 -0.41 1.26 16 27 H 0.07 1.58 7.94 -51.93 -0.41 1.17 16 28 H 0.04 0.70 7.03 -51.93 -0.36 0.34 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.15 1.44 7.60 -52.48 -0.40 1.04 16 32 H 0.15 1.64 7.60 -52.49 -0.40 1.24 16 33 H 0.15 2.06 7.04 -52.49 -0.37 1.69 16 34 H 0.05 0.88 6.12 -51.93 -0.32 0.57 16 35 H 0.09 1.74 7.39 -51.93 -0.38 1.35 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -25.87 299.85 -8.29 -34.16 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -3.08 Total: 10.27 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.04 Total: -12.80 kcal Atomic # 7 Polarization: -30.20 SS G_CDS: -0.13 Total: -30.33 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.54 Total: -20.51 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -25.87 -8.29 -34.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.957 kcal (2) G-P(sol) polarization free energy of solvation -25.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds