Wall clock time and date at job start Mon Mar 30 2020 23:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00086 * 2 1 4 4 H 1.48502 * 109.46842 * 85.03302 * 3 2 1 5 5 H 1.48500 * 109.47181 * 205.02914 * 3 2 1 6 6 H 1.48500 * 109.46871 * 325.03371 * 3 2 1 7 7 C 1.37875 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00653 * 185.80697 * 7 2 1 9 9 C 1.50702 * 119.99770 * 5.79573 * 7 2 1 10 10 O 1.42904 * 110.27339 * 59.58720 * 9 7 2 11 11 C 1.54590 * 110.31313 * 297.38806 * 9 7 2 12 12 C 1.54941 * 102.92266 * 219.12859 * 11 9 7 13 13 N 1.48537 * 103.22762 * 37.41041 * 12 11 9 14 14 C 1.39672 * 110.99747 * 200.28374 * 13 12 11 15 15 C 1.38916 * 120.07127 * 242.86976 * 14 13 12 16 16 C 1.38102 * 119.92106 * 179.72369 * 15 14 13 17 17 C 1.38279 * 120.07811 * 0.55390 * 16 15 14 18 18 N 1.48006 * 119.92934 * 179.74735 * 17 16 15 19 19 O 1.21791 * 120.00500 * 179.97438 * 18 17 16 20 20 O 1.21798 * 119.99529 * 359.97243 * 18 17 16 21 21 C 1.38287 * 120.15016 * 359.71751 * 17 16 15 22 22 C 1.38104 * 120.07292 * 0.02562 * 21 17 16 23 23 C 1.47902 * 105.81933 * 320.79436 * 13 12 11 24 24 H 0.97001 * 120.00378 * 359.97438 * 1 2 3 25 25 H 0.96705 * 113.99265 * 300.69570 * 10 9 7 26 26 H 1.09001 * 110.72455 * 337.48285 * 11 9 7 27 27 H 1.08998 * 110.72458 * 100.77024 * 11 9 7 28 28 H 1.09007 * 110.66379 * 278.97790 * 12 11 9 29 29 H 1.08998 * 110.81151 * 155.91904 * 12 11 9 30 30 H 1.08002 * 120.03661 * 359.97438 * 15 14 13 31 31 H 1.08008 * 119.95905 * 180.29477 * 16 15 14 32 32 H 1.08002 * 119.96473 * 180.02562 * 21 17 16 33 33 H 1.07998 * 120.04099 * 180.02562 * 22 21 17 34 34 H 1.08997 * 109.92047 * 265.97403 * 23 13 12 35 35 H 1.08998 * 110.07962 * 144.77190 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3917 2.1070 1.3949 5 1 3.5953 1.4121 -0.5923 6 1 1.5030 2.6201 -0.8024 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1966 0.0941 9 6 1.2568 -2.4957 -0.1329 10 8 0.5260 -2.5244 -1.3606 11 6 0.3019 -2.6905 1.0671 12 6 0.4285 -4.2051 1.3684 13 7 1.8675 -4.4810 1.1245 14 6 2.0852 -5.8424 0.9012 15 6 2.8791 -6.5731 1.7761 16 6 3.0877 -7.9203 1.5555 17 6 2.5166 -8.5396 0.4589 18 7 2.7469 -9.9824 0.2225 19 8 2.2442 -10.5293 -0.7426 20 8 3.4392 -10.6228 0.9933 21 6 1.7303 -7.8140 -0.4172 22 6 1.5133 -6.4675 -0.1996 23 6 2.2349 -3.6833 -0.0655 24 1 -0.4851 0.8400 0.0004 25 1 -0.1213 -1.8114 -1.4497 26 1 0.6302 -2.0986 1.9214 27 1 -0.7215 -2.4364 0.7909 28 1 -0.1952 -4.7859 0.6888 29 1 0.1663 -4.4170 2.4049 30 1 3.3294 -6.0890 2.6301 31 1 3.7010 -8.4901 2.2380 32 1 1.2854 -8.3007 -1.2725 33 1 0.8988 -5.9015 -0.8840 34 1 2.1417 -4.2927 -0.9644 35 1 3.2571 -3.3173 0.0304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:46 Heat of formation + Delta-G solvation = -30.777214 kcal Electronic energy + Delta-G solvation = -21335.975809 eV Core-core repulsion = 17915.763862 eV Total energy + Delta-G solvation = -3420.211947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.27852 -41.47863 -39.36316 -37.69728 -36.71097 -34.18900 -33.02917 -32.46989 -30.28437 -29.97267 -27.26820 -26.15816 -24.36574 -23.42835 -22.03879 -21.36492 -20.40018 -19.77684 -19.12448 -18.63339 -18.24833 -16.98261 -16.78775 -16.13344 -15.97261 -15.70253 -15.30831 -14.87153 -14.64933 -14.13792 -13.91088 -13.88460 -13.30272 -13.24595 -12.89778 -12.78033 -12.64336 -12.55881 -12.37249 -12.31956 -12.31369 -12.18401 -11.98517 -11.17411 -10.68629 -10.43106 -10.34106 -10.12962 -9.72578 -8.23040 -6.36249 -1.28647 -0.07047 0.22107 0.34464 1.39887 1.44260 1.52722 2.16686 2.38581 2.66548 3.03644 3.37039 3.47197 3.69457 3.83824 3.93754 4.11702 4.19514 4.24850 4.37990 4.43867 4.53236 4.63942 4.69524 4.77664 4.99678 5.07578 5.10670 5.19361 5.30211 5.36162 5.59283 5.68007 5.77587 6.10054 6.18123 6.48803 6.67544 7.31757 7.37156 8.81889 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043087 B = 0.003739 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.695505 B = 7487.614481 C = 7630.571788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.557 4.557 8 H 0.054 0.946 9 C 0.229 3.771 10 O -0.598 6.598 11 C -0.106 4.106 12 C 0.044 3.956 13 N -0.488 5.488 14 C 0.139 3.861 15 C -0.091 4.091 16 C -0.036 4.036 17 C -0.068 4.068 18 N 0.034 4.966 19 O -0.190 6.190 20 O -0.168 6.168 21 C -0.039 4.039 22 C -0.153 4.153 23 C 0.063 3.937 24 H 0.268 0.732 25 H 0.377 0.623 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.173 0.827 31 H 0.178 0.822 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.050 0.950 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 -11.305 3.486 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.168 4.168 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.595 4.595 8 H 0.073 0.927 9 C 0.189 3.811 10 O -0.406 6.406 11 C -0.145 4.145 12 C -0.081 4.081 13 N -0.210 5.210 14 C 0.044 3.956 15 C -0.110 4.110 16 C -0.055 4.055 17 C -0.152 4.152 18 N 0.549 4.451 19 O -0.400 6.400 20 O -0.384 6.384 21 C -0.059 4.059 22 C -0.174 4.174 23 C -0.063 4.063 24 H 0.078 0.922 25 H 0.227 0.773 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.191 0.809 31 H 0.195 0.805 32 H 0.179 0.821 33 H 0.161 0.839 34 H 0.068 0.932 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.712 -10.877 3.915 11.874 hybrid contribution -0.533 1.075 -0.858 1.475 sum 2.179 -9.802 3.057 10.496 Atomic orbital electron populations 1.69818 1.06624 1.28098 1.50333 1.25606 0.95769 1.02007 0.93426 0.85608 0.78794 0.79558 0.78025 1.20256 1.19868 1.20745 1.21916 0.93914 0.92167 1.51483 0.92739 1.19543 0.88056 0.91944 0.81531 1.86089 1.57217 1.55429 1.41890 1.22759 0.99629 0.92713 0.99429 1.23429 0.85683 0.97156 1.01814 1.62633 1.19709 1.02424 1.36184 1.19889 0.92762 0.90380 0.92605 1.21267 0.97568 0.91560 1.00635 1.21217 0.95599 0.94679 0.93999 1.21261 1.10630 0.79802 1.03479 1.43819 0.98028 1.04006 0.99210 1.94527 1.51823 1.72651 1.21022 1.94499 1.35841 1.65181 1.42923 1.20967 0.93644 0.93356 0.97935 1.21847 1.01881 0.94052 0.99595 1.22876 0.99766 0.93930 0.89754 0.92217 0.77327 0.92974 0.92461 0.93075 0.88644 0.80931 0.80490 0.82057 0.83907 0.93192 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.00 10.91 21.45 0.23 -45.77 16 2 C 0.03 1.64 5.24 84.65 0.44 2.09 16 3 Si 0.95 40.50 29.54 68.60 2.03 42.52 16 4 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.56 -28.21 8.10 25.60 0.21 -28.00 16 8 H 0.05 2.78 7.35 -2.91 -0.02 2.76 16 9 C 0.23 10.39 0.99 -10.66 -0.01 10.38 16 10 O -0.60 -28.47 12.93 -148.98 -1.93 -30.40 16 11 C -0.11 -4.46 5.27 31.80 0.17 -4.29 16 12 C 0.04 1.45 6.43 86.65 0.56 2.00 16 13 N -0.49 -15.70 5.28 -682.75 -3.60 -19.30 16 14 C 0.14 3.65 4.86 38.22 0.19 3.84 16 15 C -0.09 -1.89 9.97 22.40 0.22 -1.67 16 16 C -0.04 -0.69 9.55 22.25 0.21 -0.48 16 17 C -0.07 -1.59 6.85 36.40 0.25 -1.34 16 18 N 0.03 0.92 4.45 -46.42 -0.21 0.71 16 19 O -0.19 -5.43 18.44 18.90 0.35 -5.08 16 20 O -0.17 -4.53 18.44 18.89 0.35 -4.18 16 21 C -0.04 -0.89 9.55 22.25 0.21 -0.68 16 22 C -0.15 -3.83 7.90 22.40 0.18 -3.65 16 23 C 0.06 2.41 5.96 86.45 0.52 2.93 16 24 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 25 H 0.38 18.53 7.43 -74.05 -0.55 17.98 16 26 H 0.05 2.37 7.86 -2.39 -0.02 2.35 16 27 H 0.06 2.53 7.94 -2.39 -0.02 2.51 16 28 H 0.05 1.60 7.03 -2.38 -0.02 1.58 16 29 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.18 2.59 7.60 -2.91 -0.02 2.57 16 32 H 0.16 3.24 7.60 -2.91 -0.02 3.22 16 33 H 0.14 3.78 7.04 -2.91 -0.02 3.76 16 34 H 0.05 1.86 6.12 -2.39 -0.01 1.85 16 35 H 0.08 3.15 7.39 -2.39 -0.02 3.13 16 Total: -1.00 -54.56 299.85 0.95 -53.61 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.58 Total: 26.77 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 3.14 Total: -18.88 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -3.58 Total: -64.36 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.23 Total: -39.66 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -54.56 0.95 -53.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.837 kcal (2) G-P(sol) polarization free energy of solvation -54.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds