Wall clock time and date at job start Tue Mar 31 2020 00:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48501 * 109.46793 * 240.00118 * 3 2 1 5 5 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47000 * 120.00025 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99622 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46969 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.47159 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99686 * 179.97438 * 11 10 9 13 13 O 1.21703 * 120.00431 * 0.02562 * 12 11 10 14 14 C 1.46382 * 119.99501 * 180.02562 * 12 11 10 15 15 C 1.35247 * 119.99656 * 180.28138 * 14 12 11 16 16 C 1.46330 * 119.99725 * 179.72433 * 15 14 12 17 17 C 1.38090 * 125.82440 * 179.71387 * 16 15 14 18 18 C 1.39806 * 106.83871 * 179.84787 * 17 16 15 19 19 C 1.37727 * 106.89625 * 0.41003 * 18 17 16 20 20 C 1.47001 * 125.77051 * 179.72480 * 19 18 17 21 21 N 1.34781 * 120.00160 * 179.97438 * 20 19 18 22 22 O 1.21651 * 120.00004 * 359.97438 * 20 19 18 23 23 O 1.34573 * 125.82509 * 0.02562 * 16 15 14 24 24 H 0.97004 * 120.00751 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46702 * 60.00403 * 9 7 2 26 26 H 1.08998 * 109.47115 * 300.00195 * 9 7 2 27 27 H 1.09000 * 109.47439 * 60.00015 * 10 9 7 28 28 H 1.08998 * 109.47408 * 300.00073 * 10 9 7 29 29 H 0.97000 * 119.99595 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.99760 * 359.97438 * 14 12 11 31 31 H 1.08002 * 120.00523 * 359.71603 * 15 14 12 32 32 H 1.08001 * 126.57712 * 359.97438 * 17 16 15 33 33 H 1.07995 * 126.55142 * 180.13410 * 18 17 16 34 34 H 0.97001 * 119.99719 * 0.02562 * 21 20 19 35 35 H 0.96997 * 119.99808 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0018 11 7 1.5129 -4.9308 -0.0024 12 6 2.1869 -6.0979 -0.0041 13 8 3.4040 -6.0978 -0.0046 14 6 1.4551 -7.3656 -0.0053 15 6 2.1314 -8.5368 -0.0012 16 6 1.3998 -9.8041 0.0037 17 6 1.9654 -11.0639 0.0025 18 6 0.9106 -11.9814 0.0121 19 6 -0.2563 -11.2498 0.0093 20 6 -1.6179 -11.8039 0.0111 21 7 -2.6821 -10.9768 0.0084 22 8 -1.7842 -13.0090 0.0149 23 8 0.0611 -9.9407 0.0042 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5566 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6038 -0.8922 29 1 0.5429 -4.9308 -0.0024 30 1 0.3751 -7.3656 -0.0044 31 1 3.2114 -8.5368 -0.0017 32 1 3.0202 -11.2958 -0.0025 33 1 0.9947 -13.0580 0.0160 34 1 -2.5495 -10.0159 0.0050 35 1 -3.5805 -11.3425 0.0093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832023247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:38 Heat of formation + Delta-G solvation = -59.572749 kcal Electronic energy + Delta-G solvation = -19539.730474 eV Core-core repulsion = 16118.269859 eV Total energy + Delta-G solvation = -3421.460615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.96390 -39.59845 -39.33779 -35.09970 -34.44117 -33.87838 -33.37150 -32.89689 -30.14871 -29.16019 -25.69563 -24.32552 -22.53516 -21.89158 -21.01634 -20.65831 -19.57192 -18.77092 -17.34595 -17.29642 -16.78730 -16.38860 -16.01294 -15.15485 -14.97244 -14.80619 -14.69995 -14.53029 -13.71667 -13.52339 -13.48924 -13.15654 -12.77949 -12.47553 -12.31169 -11.27206 -11.08288 -10.91831 -10.87293 -10.70300 -10.39704 -10.31765 -10.23466 -9.98203 -9.58196 -9.30594 -8.68814 -8.47909 -8.33899 -6.13552 -4.16774 0.05328 1.21232 2.11530 2.28547 2.73251 3.04490 3.28444 3.32471 3.34820 3.45487 3.51752 4.25469 4.39080 4.43984 4.53341 4.85209 5.05650 5.17845 5.23571 5.27758 5.49129 5.64816 5.89579 6.00927 6.18388 6.27176 6.28758 6.43400 6.65921 6.78921 6.83052 7.45319 7.55301 7.64806 7.83704 7.88580 8.21770 8.49245 8.88875 9.48357 10.97990 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032494 B = 0.002467 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.500155 B =11346.936506 C =12187.980596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.711 5.711 12 C 0.533 3.467 13 O -0.550 6.550 14 C -0.163 4.163 15 C -0.026 4.026 16 C 0.047 3.953 17 C -0.190 4.190 18 C -0.113 4.113 19 C -0.084 4.084 20 C 0.612 3.388 21 N -0.842 5.842 22 O -0.524 6.524 23 O -0.154 6.154 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.400 0.600 30 H 0.132 0.868 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.409 0.591 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -21.783 0.000 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.360 5.360 12 C 0.320 3.680 13 O -0.431 6.431 14 C -0.184 4.184 15 C -0.045 4.045 16 C -0.005 4.005 17 C -0.209 4.209 18 C -0.134 4.134 19 C -0.137 4.137 20 C 0.396 3.604 21 N -0.406 5.406 22 O -0.401 6.401 23 O -0.050 6.050 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.234 0.766 30 H 0.150 0.850 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.238 0.762 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.634 -22.153 0.002 22.309 hybrid contribution -0.377 1.249 -0.001 1.304 sum -3.010 -20.904 0.001 21.120 Atomic orbital electron populations 1.69939 1.06104 1.27060 1.50211 1.24995 0.94903 0.99443 0.94915 0.86560 0.79517 0.82585 0.78810 1.20078 1.21228 1.20084 1.21005 0.93232 0.90364 1.51609 0.92254 1.19327 0.94189 0.91094 0.97902 1.21790 0.96131 0.81283 1.01029 1.46271 1.10672 1.06588 1.72456 1.18193 0.87559 0.84378 0.77883 1.90806 1.13490 1.87963 1.50800 1.23363 1.00882 0.92866 1.01335 1.21560 0.99615 0.86646 0.96725 1.21362 0.79565 0.95679 1.03898 1.22254 1.01053 0.90440 1.07147 1.22119 0.90013 1.01350 0.99897 1.22335 0.95651 0.80819 1.14888 1.16559 0.82060 0.85778 0.75963 1.43705 1.08932 1.11034 1.76887 1.90925 1.84817 1.13614 1.50793 1.84032 1.24135 1.26484 1.70330 0.92741 0.95893 0.95884 0.92280 0.92288 0.76628 0.84971 0.81674 0.81693 0.81755 0.76182 0.75795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.45 5.61 -4.04 -0.02 2.42 16 11 N -0.71 -11.68 5.55 -61.71 -0.34 -12.02 16 12 C 0.53 8.42 7.74 -12.99 -0.10 8.32 16 13 O -0.55 -10.61 16.24 5.19 0.08 -10.52 16 14 C -0.16 -1.87 9.67 -37.37 -0.36 -2.23 16 15 C -0.03 -0.27 9.64 -37.39 -0.36 -0.63 16 16 C 0.05 0.45 7.02 -36.38 -0.26 0.20 16 17 C -0.19 -1.60 10.88 -39.05 -0.42 -2.02 16 18 C -0.11 -1.02 10.64 -39.18 -0.42 -1.44 16 19 C -0.08 -0.82 7.16 -36.22 -0.26 -1.08 16 20 C 0.61 5.88 8.07 -12.71 -0.10 5.78 16 21 N -0.84 -4.98 8.87 30.34 0.27 -4.71 16 22 O -0.52 -6.66 17.70 5.23 0.09 -6.57 16 23 O -0.15 -1.48 10.01 3.88 0.04 -1.45 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.40 5.55 8.45 -40.82 -0.35 5.20 16 30 H 0.13 1.20 7.78 -52.49 -0.41 0.79 16 31 H 0.17 1.64 7.53 -52.49 -0.39 1.25 16 32 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.41 1.75 8.58 -40.82 -0.35 1.40 16 35 H 0.41 1.72 8.93 -40.82 -0.36 1.35 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -33.64 324.61 -6.05 -39.68 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.94 Total: 3.16 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.86 Total: -3.52 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.66 Total: -41.70 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.22 Total: -18.54 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.64 -6.05 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832023247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.889 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds