Wall clock time and date at job start Tue Mar 31 2020 00:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48501 * 109.46793 * 240.00118 * 3 2 1 5 5 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47000 * 120.00025 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99622 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46969 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.47159 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99686 * 179.97438 * 11 10 9 13 13 O 1.21703 * 120.00431 * 0.02562 * 12 11 10 14 14 C 1.46382 * 119.99501 * 180.02562 * 12 11 10 15 15 C 1.35247 * 119.99656 * 180.28138 * 14 12 11 16 16 C 1.46330 * 119.99725 * 179.72433 * 15 14 12 17 17 C 1.38090 * 125.82440 * 179.71387 * 16 15 14 18 18 C 1.39806 * 106.83871 * 179.84787 * 17 16 15 19 19 C 1.37727 * 106.89625 * 0.41003 * 18 17 16 20 20 C 1.47001 * 125.77051 * 179.72480 * 19 18 17 21 21 N 1.34781 * 120.00160 * 179.97438 * 20 19 18 22 22 O 1.21651 * 120.00004 * 359.97438 * 20 19 18 23 23 O 1.34573 * 125.82509 * 0.02562 * 16 15 14 24 24 H 0.97004 * 120.00751 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46702 * 60.00403 * 9 7 2 26 26 H 1.08998 * 109.47115 * 300.00195 * 9 7 2 27 27 H 1.09000 * 109.47439 * 60.00015 * 10 9 7 28 28 H 1.08998 * 109.47408 * 300.00073 * 10 9 7 29 29 H 0.97000 * 119.99595 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.99760 * 359.97438 * 14 12 11 31 31 H 1.08002 * 120.00523 * 359.71603 * 15 14 12 32 32 H 1.08001 * 126.57712 * 359.97438 * 17 16 15 33 33 H 1.07995 * 126.55142 * 180.13410 * 18 17 16 34 34 H 0.97001 * 119.99719 * 0.02562 * 21 20 19 35 35 H 0.96997 * 119.99808 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0018 11 7 1.5129 -4.9308 -0.0024 12 6 2.1869 -6.0979 -0.0041 13 8 3.4040 -6.0978 -0.0046 14 6 1.4551 -7.3656 -0.0053 15 6 2.1314 -8.5368 -0.0012 16 6 1.3998 -9.8041 0.0037 17 6 1.9654 -11.0639 0.0025 18 6 0.9106 -11.9814 0.0121 19 6 -0.2563 -11.2498 0.0093 20 6 -1.6179 -11.8039 0.0111 21 7 -2.6821 -10.9768 0.0084 22 8 -1.7842 -13.0090 0.0149 23 8 0.0611 -9.9407 0.0042 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5566 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6038 -0.8922 29 1 0.5429 -4.9308 -0.0024 30 1 0.3751 -7.3656 -0.0044 31 1 3.2114 -8.5368 -0.0017 32 1 3.0202 -11.2958 -0.0025 33 1 0.9947 -13.0580 0.0160 34 1 -2.5495 -10.0159 0.0050 35 1 -3.5805 -11.3425 0.0093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832023247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:37 Heat of formation + Delta-G solvation = -85.432157 kcal Electronic energy + Delta-G solvation = -19540.851822 eV Core-core repulsion = 16118.269859 eV Total energy + Delta-G solvation = -3422.581963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.68003 -40.68688 -40.31917 -36.68202 -35.22111 -34.82067 -34.70052 -34.08185 -31.74044 -30.18904 -27.18845 -25.59791 -23.54315 -22.85682 -22.46740 -21.54825 -20.62052 -19.45196 -18.67638 -18.16296 -17.97223 -17.51703 -17.06987 -16.46627 -16.42863 -16.31672 -15.58888 -15.47113 -15.03249 -14.81538 -14.29558 -14.21486 -14.12451 -13.63198 -13.34734 -13.22206 -12.93132 -12.54205 -12.24460 -11.71580 -11.69291 -11.68462 -11.48420 -11.05198 -11.00793 -10.86817 -10.59764 -10.05793 -9.20950 -8.23859 -6.34217 -0.76566 0.42496 1.37822 1.42710 1.44605 1.47172 1.52583 2.00681 2.22889 2.32245 2.42557 2.47822 3.11115 3.42960 3.77133 3.85067 4.02630 4.11009 4.47659 4.49033 4.50230 4.58442 4.76612 4.86394 4.91574 5.13225 5.27186 5.31183 5.49345 5.58879 5.59063 5.77830 5.79089 6.16366 6.23377 6.60432 6.79126 7.04760 7.22331 7.35194 8.87736 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032494 B = 0.002467 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.500155 B =11346.936506 C =12187.980596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.710 5.710 12 C 0.536 3.464 13 O -0.590 6.590 14 C -0.180 4.180 15 C 0.003 3.997 16 C 0.026 3.974 17 C -0.172 4.172 18 C -0.122 4.122 19 C -0.090 4.090 20 C 0.609 3.391 21 N -0.822 5.822 22 O -0.561 6.561 23 O -0.155 6.155 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.413 0.587 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.191 0.809 33 H 0.176 0.824 34 H 0.419 0.581 35 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 -22.499 -0.001 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.015 3.985 11 N -0.359 5.359 12 C 0.325 3.675 13 O -0.473 6.473 14 C -0.200 4.200 15 C -0.017 4.017 16 C -0.025 4.025 17 C -0.191 4.191 18 C -0.142 4.142 19 C -0.143 4.143 20 C 0.394 3.606 21 N -0.386 5.386 22 O -0.442 6.442 23 O -0.050 6.050 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.249 0.751 30 H 0.174 0.826 31 H 0.187 0.813 32 H 0.209 0.791 33 H 0.194 0.806 34 H 0.250 0.750 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -2.464 -22.855 0.001 22.987 hybrid contribution -0.468 1.339 -0.001 1.419 sum -2.932 -21.515 0.000 21.714 Atomic orbital electron populations 1.70044 1.07525 1.28072 1.50986 1.25861 0.95788 1.03076 0.94436 0.85516 0.78317 0.78192 0.79141 1.19332 1.20675 1.19341 1.21456 0.93639 0.91962 1.51574 0.92228 1.19138 0.94254 0.91731 0.96438 1.21261 0.95067 0.82066 1.00068 1.46060 1.11251 1.05631 1.72967 1.18755 0.87196 0.85215 0.76287 1.90782 1.15324 1.88547 1.52637 1.23110 1.01731 0.90755 1.04443 1.21628 0.99821 0.86588 0.93628 1.21330 0.79723 0.95724 1.05749 1.22618 1.02237 0.89579 1.04662 1.22410 0.89972 1.02167 0.99650 1.22502 0.96080 0.81013 1.14701 1.16626 0.82651 0.85518 0.75817 1.43596 1.08744 1.11345 1.74910 1.90908 1.85303 1.15074 1.52873 1.84012 1.24214 1.26391 1.70432 0.92537 0.97234 0.97225 0.93271 0.93281 0.75099 0.82554 0.81342 0.79149 0.80621 0.74975 0.74640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.58 13.29 21.45 0.28 -53.30 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.55 -30.06 9.11 25.60 0.23 -29.82 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.07 5.09 29.85 0.15 1.22 16 10 C 0.14 5.76 5.61 86.38 0.48 6.25 16 11 N -0.71 -23.18 5.55 -467.38 -2.59 -25.77 16 12 C 0.54 16.62 7.74 86.36 0.67 17.29 16 13 O -0.59 -22.69 16.24 -4.36 -0.07 -22.76 16 14 C -0.18 -3.83 9.67 23.70 0.23 -3.60 16 15 C 0.00 0.05 9.64 23.69 0.23 0.28 16 16 C 0.03 0.45 7.02 24.34 0.17 0.62 16 17 C -0.17 -2.42 10.88 22.61 0.25 -2.18 16 18 C -0.12 -1.93 10.64 22.53 0.24 -1.69 16 19 C -0.09 -1.59 7.16 24.45 0.18 -1.41 16 20 C 0.61 10.92 8.07 86.54 0.70 11.62 16 21 N -0.82 -8.35 8.87 -176.17 -1.56 -9.91 16 22 O -0.56 -13.86 17.70 -4.19 -0.07 -13.93 16 23 O -0.15 -2.65 10.01 -9.04 -0.09 -2.74 16 24 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.41 11.26 8.45 -92.71 -0.78 10.48 16 30 H 0.16 2.50 7.78 -2.91 -0.02 2.48 16 31 H 0.17 3.04 7.53 -2.91 -0.02 3.01 16 32 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.42 2.74 8.58 -92.71 -0.80 1.94 16 35 H 0.42 2.83 8.93 -92.71 -0.83 2.00 16 Total: -1.00 -72.13 324.61 0.66 -71.47 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -1.25 Total: 12.54 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 3.99 Total: -0.56 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -3.87 Total: -88.98 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.24 Total: -39.43 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -72.13 0.66 -71.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832023247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.964 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds