Wall clock time and date at job start Tue Mar 31 2020 00:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99851 * 2 1 4 4 H 1.48502 * 109.46926 * 240.00180 * 3 2 1 5 5 H 1.48496 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47014 * 120.00150 * 3 2 1 7 7 C 1.37879 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47165 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99671 * 179.97438 * 11 10 9 13 13 O 1.21701 * 120.00300 * 0.02562 * 12 11 10 14 14 C 1.46374 * 119.99841 * 179.97438 * 12 11 10 15 15 C 1.35245 * 120.00196 * 187.70642 * 14 12 11 16 16 C 1.46329 * 119.99796 * 28.39765 * 15 14 12 17 17 C 1.38091 * 125.82435 * 187.09030 * 16 15 14 18 18 C 1.39801 * 106.84080 * 179.85090 * 17 16 15 19 19 C 1.37723 * 106.89445 * 0.40598 * 18 17 16 20 20 C 1.47009 * 125.76963 * 179.78004 * 19 18 17 21 21 N 1.34777 * 119.99959 * 179.97438 * 20 19 18 22 22 O 1.21653 * 120.00086 * 359.97438 * 20 19 18 23 23 O 1.34570 * 125.82555 * 7.39992 * 16 15 14 24 24 H 0.96996 * 119.99830 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47252 * 59.99962 * 9 7 2 26 26 H 1.09004 * 109.47137 * 300.00112 * 9 7 2 27 27 H 1.08995 * 109.47043 * 60.00053 * 10 9 7 28 28 H 1.09004 * 109.46986 * 299.99962 * 10 9 7 29 29 H 0.97001 * 120.00322 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.99810 * 7.70596 * 14 12 11 31 31 H 1.07995 * 120.00497 * 208.39937 * 15 14 12 32 32 H 1.08001 * 126.57885 * 359.97438 * 17 16 15 33 33 H 1.08004 * 126.55078 * 180.15457 * 18 17 16 34 34 H 0.97003 * 120.00197 * 359.97438 * 21 20 19 35 35 H 0.96994 * 120.00039 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0018 13 8 3.4038 -6.0980 -0.0014 14 6 1.4549 -7.3657 -0.0018 15 6 2.1220 -8.5317 0.1546 16 6 3.3743 -8.5623 0.9110 17 6 4.2206 -9.6470 1.0295 18 6 5.2908 -9.2400 1.8316 19 6 5.0541 -7.9286 2.1795 20 6 5.9208 -7.0938 3.0240 21 7 5.5754 -5.8187 3.2911 22 8 6.9497 -7.5539 3.4818 23 8 3.8947 -7.5401 1.6146 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.5428 -4.9309 -0.0019 30 1 0.3822 -7.3698 -0.1268 31 1 1.7306 -9.4401 -0.2787 32 1 4.0832 -10.6221 0.5859 33 1 6.1389 -9.8406 2.1259 34 1 4.7551 -5.4517 2.9257 35 1 6.1470 -5.2680 3.8486 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832023248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:40 Heat of formation + Delta-G solvation = -72.940443 kcal Electronic energy + Delta-G solvation = -20730.265597 eV Core-core repulsion = 17308.225315 eV Total energy + Delta-G solvation = -3422.040282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.48662 -40.57098 -40.25369 -36.62130 -35.12029 -34.78088 -34.56339 -33.87894 -31.67867 -30.02318 -27.11800 -25.44863 -23.54756 -22.72907 -22.50104 -21.51810 -20.45243 -19.44410 -18.61048 -18.13158 -17.98541 -17.28295 -16.88796 -16.50760 -16.34031 -15.81124 -15.56013 -15.26164 -15.10594 -14.69774 -14.32024 -14.16896 -14.03766 -13.78100 -13.21938 -13.17610 -12.92352 -12.54386 -12.21696 -11.72349 -11.64830 -11.47699 -11.24621 -10.97178 -10.81286 -10.77375 -10.59617 -9.93742 -8.98141 -8.24199 -6.34390 -0.69202 0.47702 1.41705 1.43130 1.51212 1.61248 1.66975 2.04375 2.32902 2.40791 2.49609 2.56486 3.10812 3.56215 3.84726 3.93242 4.03991 4.49549 4.51744 4.52439 4.60168 4.69335 4.84469 4.87794 5.00502 5.17047 5.33158 5.47464 5.53503 5.59627 5.59877 5.80338 5.89502 6.16915 6.23268 6.72415 6.79258 6.99700 7.35058 7.37590 8.87333 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020117 B = 0.003917 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.521276 B = 7147.332695 C = 8357.520836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.144 3.856 11 N -0.713 5.713 12 C 0.519 3.481 13 O -0.572 6.572 14 C -0.200 4.200 15 C 0.001 3.999 16 C 0.021 3.979 17 C -0.182 4.182 18 C -0.132 4.132 19 C -0.107 4.107 20 C 0.606 3.394 21 N -0.826 5.826 22 O -0.565 6.565 23 O -0.135 6.135 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.009 0.991 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.410 0.590 30 H 0.184 0.816 31 H 0.217 0.783 32 H 0.200 0.800 33 H 0.171 0.829 34 H 0.413 0.587 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -19.795 1.889 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.020 3.980 11 N -0.364 5.364 12 C 0.309 3.691 13 O -0.454 6.454 14 C -0.220 4.220 15 C -0.017 4.017 16 C -0.032 4.032 17 C -0.201 4.201 18 C -0.152 4.152 19 C -0.161 4.161 20 C 0.392 3.608 21 N -0.388 5.388 22 O -0.447 6.447 23 O -0.029 6.029 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.246 0.754 30 H 0.201 0.799 31 H 0.234 0.766 32 H 0.217 0.783 33 H 0.188 0.812 34 H 0.243 0.757 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.680 -19.742 2.141 20.037 hybrid contribution -0.126 1.717 0.039 1.722 sum 2.554 -18.025 2.180 18.335 Atomic orbital electron populations 1.70045 1.07492 1.28024 1.50993 1.25829 0.95739 1.02944 0.94454 0.85555 0.78358 0.78398 0.79090 1.19497 1.20641 1.19321 1.21439 0.93523 0.92008 1.51540 0.92406 1.19127 0.94255 0.91804 0.96294 1.21147 0.94899 0.82385 0.99581 1.46080 1.10999 1.05575 1.73713 1.19200 0.87693 0.85540 0.76697 1.90814 1.15076 1.88128 1.51389 1.23523 1.02153 0.90400 1.05929 1.22281 0.87142 1.00719 0.91606 1.22098 0.97520 0.85579 0.98016 1.22607 0.93428 1.01214 1.02828 1.22355 1.01061 0.93065 0.98725 1.22499 0.90039 0.96898 1.06629 1.16786 0.83402 0.82023 0.78553 1.43646 1.28826 1.12493 1.53850 1.90849 1.25671 1.73944 1.54212 1.84334 1.30393 1.37994 1.50216 0.92557 0.97466 0.97278 0.93389 0.94072 0.75378 0.79913 0.76638 0.78275 0.81165 0.75695 0.74978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.42 13.29 21.45 0.28 -53.13 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.55 -29.87 9.11 25.60 0.23 -29.63 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.14 5.89 5.61 86.38 0.48 6.38 16 11 N -0.71 -22.78 5.55 -467.38 -2.59 -25.38 16 12 C 0.52 15.69 7.26 86.36 0.63 16.32 16 13 O -0.57 -21.57 13.10 19.19 0.25 -21.31 16 14 C -0.20 -3.69 9.99 23.70 0.24 -3.46 16 15 C 0.00 0.02 10.02 23.69 0.24 0.26 16 16 C 0.02 0.47 6.25 24.34 0.15 0.62 16 17 C -0.18 -3.40 10.88 22.61 0.25 -3.15 16 18 C -0.13 -3.15 10.64 22.53 0.24 -2.91 16 19 C -0.11 -3.13 7.16 24.45 0.18 -2.96 16 20 C 0.61 18.45 8.07 86.54 0.70 19.15 16 21 N -0.83 -20.76 8.87 -176.17 -1.56 -22.32 16 22 O -0.57 -19.76 17.70 -4.20 -0.07 -19.84 16 23 O -0.14 -4.03 7.05 14.53 0.10 -3.93 16 24 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 25 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.41 10.97 8.45 -92.71 -0.78 10.19 16 30 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.22 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.20 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.41 10.46 8.58 -92.71 -0.80 9.66 16 35 H 0.42 8.60 8.93 -92.71 -0.83 7.77 16 Total: -1.00 -75.67 318.77 1.13 -74.54 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -1.25 Total: 23.58 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 3.94 Total: 2.84 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -3.87 Total: -100.83 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: 0.28 Total: -45.08 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -75.67 1.13 -74.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832023248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.599 kcal (2) G-P(sol) polarization free energy of solvation -75.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds