Wall clock time and date at job start Tue Mar 31 2020 00:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38665 * 120.11455 * 2 1 4 4 N 1.39714 * 120.00180 * 359.96356 * 3 2 1 5 5 C 1.46498 * 120.00197 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47480 * 179.97438 * 5 4 3 7 7 O 1.21291 * 119.99867 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99790 * 179.72153 * 6 5 4 9 9 C 1.37099 * 119.99541 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00076 * 0.02562 * 9 8 6 11 11 C 1.38948 * 119.99970 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99986 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00356 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46900 * 59.99591 * 13 11 9 15 15 H 1.48493 * 109.47492 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46982 * 300.00103 * 13 11 9 17 17 C 1.38992 * 119.99674 * 180.23103 * 3 2 1 18 18 C 1.38249 * 120.22812 * 359.49776 * 17 3 2 19 19 C 1.37977 * 120.23308 * 0.50725 * 18 17 3 20 20 C 1.39501 * 120.11489 * 179.97438 * 2 1 3 21 21 C 1.47743 * 120.11757 * 0.04040 * 20 2 1 22 22 O 1.21468 * 119.99977 * 6.14234 * 21 20 2 23 23 O 1.34708 * 120.00093 * 186.14593 * 21 20 2 24 24 H 1.08999 * 109.47120 * 96.49572 * 1 2 3 25 25 H 1.08997 * 109.47020 * 216.49604 * 1 2 3 26 26 H 1.09000 * 109.46879 * 336.49628 * 1 2 3 27 27 H 0.97001 * 120.00262 * 359.97438 * 4 3 2 28 28 H 1.09000 * 109.47213 * 59.99366 * 5 4 3 29 29 H 1.08999 * 109.47191 * 300.00026 * 5 4 3 30 30 H 0.96992 * 120.00553 * 0.02562 * 8 6 5 31 31 H 0.96998 * 120.00399 * 179.97438 * 12 11 9 32 32 H 1.07995 * 119.88329 * 179.74684 * 17 3 2 33 33 H 1.08005 * 119.88632 * 180.22833 * 18 17 3 34 34 H 1.08000 * 119.99966 * 179.72475 * 19 18 17 35 35 H 0.96702 * 117.00056 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2028 1.1995 0.0000 4 7 1.5067 2.4109 -0.0008 5 6 2.2417 3.6781 -0.0002 6 6 1.2648 4.8255 -0.0019 7 8 0.0718 4.6063 -0.0029 8 7 1.7167 6.0953 0.0040 9 6 0.8278 7.1391 0.0030 10 1 -0.2344 6.9439 -0.0020 11 6 1.2936 8.4482 0.0085 12 7 2.5861 8.6857 0.0152 13 14 0.0827 9.8706 0.0065 14 1 -0.7769 9.7905 1.2147 15 1 0.8277 11.1551 0.0138 16 1 -0.7655 9.7967 -1.2102 17 6 3.5927 1.1966 -0.0049 18 6 4.2863 0.0007 0.0008 19 6 3.6036 -1.1983 0.0007 20 6 2.2070 -1.2067 0.0005 21 6 1.4735 -2.4892 0.0002 22 8 0.2641 -2.4971 -0.1131 23 8 2.1458 -3.6497 0.1256 24 1 -0.3633 -0.1163 -1.0211 25 1 -0.3633 -0.8261 0.6112 26 1 -0.3633 0.9424 0.4098 27 1 0.5367 2.4129 -0.0017 28 1 2.8694 3.7345 -0.8895 29 1 2.8676 3.7347 0.8903 30 1 2.6706 6.2706 0.0089 31 1 2.9113 9.5995 0.0187 32 1 4.1327 2.1319 -0.0090 33 1 5.3663 0.0050 0.0007 34 1 4.1492 -2.1304 0.0006 35 1 1.6227 -4.4630 0.1196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832857046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:53 Heat of formation + Delta-G solvation = -122.392137 kcal Electronic energy + Delta-G solvation = -20533.422042 eV Core-core repulsion = 17109.237374 eV Total energy + Delta-G solvation = -3424.184668 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60157 -40.53420 -39.73555 -37.12698 -36.51313 -35.80490 -33.65016 -33.33924 -31.30786 -28.73093 -27.77971 -26.31998 -25.03059 -22.29888 -22.11599 -21.02410 -20.01595 -19.31380 -18.50800 -17.71484 -17.25303 -16.78532 -16.63568 -16.34260 -16.29639 -15.98890 -15.72753 -14.83370 -14.78026 -14.56143 -14.11852 -13.98828 -13.85928 -13.53921 -13.42236 -13.02847 -12.87881 -12.63946 -12.48694 -12.47870 -12.14590 -12.08635 -11.58341 -11.16543 -11.13559 -10.54739 -10.10102 -9.84950 -8.52267 -8.36352 -6.01853 -0.23783 0.59112 1.36830 1.41471 1.51617 1.61511 1.92178 2.00002 2.24476 2.47838 2.87615 3.15227 3.16122 3.87689 3.95502 4.11408 4.18825 4.24238 4.41787 4.49477 4.49829 4.65820 4.71600 4.78157 4.87332 5.16915 5.29781 5.36743 5.45283 5.54609 5.66346 5.80337 5.91484 6.30243 6.50645 6.69424 7.02539 7.04110 7.44710 7.97416 8.64276 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041916 B = 0.003152 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.850045 B = 8881.703761 C = 9527.622783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.117 4.117 3 C 0.195 3.805 4 N -0.736 5.736 5 C 0.127 3.873 6 C 0.428 3.572 7 O -0.632 6.632 8 N -0.558 5.558 9 C -0.340 4.340 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.913 5.913 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.269 1.269 16 H -0.272 1.272 17 C -0.166 4.166 18 C -0.082 4.082 19 C -0.116 4.116 20 C -0.104 4.104 21 C 0.530 3.470 22 O -0.538 6.538 23 O -0.501 6.501 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.403 0.597 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.401 0.599 31 H 0.280 0.720 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 -18.875 0.248 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C 0.091 3.909 4 N -0.369 5.369 5 C -0.001 4.001 6 C 0.215 3.785 7 O -0.520 6.520 8 N -0.194 5.194 9 C -0.469 4.469 10 H 0.098 0.902 11 C -0.208 4.208 12 N -0.553 5.553 13 Si 0.816 3.184 14 H -0.197 1.197 15 H -0.193 1.193 16 H -0.197 1.197 17 C -0.189 4.189 18 C -0.100 4.100 19 C -0.136 4.136 20 C -0.106 4.106 21 C 0.376 3.624 22 O -0.431 6.431 23 O -0.315 6.315 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.241 0.759 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.235 0.765 31 H 0.090 0.910 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.173 0.827 35 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 6.885 -18.281 0.223 19.536 hybrid contribution -1.108 0.541 -0.029 1.234 sum 5.777 -17.739 0.194 18.657 Atomic orbital electron populations 1.20806 0.90988 1.02053 1.02617 1.19468 0.96255 0.90883 1.05566 1.17687 0.92230 0.84776 0.96197 1.44615 1.09088 1.01606 1.81584 1.20877 0.93212 0.81772 1.04199 1.20697 0.89660 0.84876 0.83258 1.90486 1.18740 1.84825 1.57995 1.41806 1.09814 1.04204 1.63609 1.19644 0.91027 0.85642 1.50623 0.90175 1.26035 0.98402 1.00533 0.95790 1.69644 1.13456 1.23006 1.49224 0.84997 0.77703 0.76752 0.78969 1.19726 1.19319 1.19718 1.21264 0.91091 1.00820 1.05714 1.21241 1.01514 0.90393 0.96875 1.21413 0.91456 1.00065 1.00708 1.18707 0.94479 0.88689 1.08716 1.20941 0.84875 0.84999 0.71574 1.90843 1.16620 1.88136 1.47474 1.84513 1.45220 1.17186 1.84566 0.91655 0.89723 0.93168 0.75869 0.88139 0.88133 0.76451 0.91003 0.83794 0.81817 0.82686 0.70631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.23 8.44 71.24 0.60 -2.63 16 2 C -0.12 -3.32 5.93 -19.46 -0.12 -3.44 16 3 C 0.19 5.52 6.63 38.17 0.25 5.77 16 4 N -0.74 -24.17 5.61 -343.24 -1.93 -26.10 16 5 C 0.13 4.14 5.39 85.63 0.46 4.61 16 6 C 0.43 19.48 7.85 87.66 0.69 20.17 16 7 O -0.63 -33.83 15.24 -3.07 -0.05 -33.88 16 8 N -0.56 -27.35 5.29 -306.99 -1.62 -28.98 16 9 C -0.34 -18.70 9.68 84.04 0.81 -17.89 16 10 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 11 C -0.01 -0.34 5.50 84.93 0.47 0.13 16 12 N -0.91 -47.41 13.05 21.66 0.28 -47.13 16 13 Si 0.99 41.67 29.55 68.60 2.03 43.70 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 17 C -0.17 -3.69 9.31 22.45 0.21 -3.48 16 18 C -0.08 -1.43 10.02 22.21 0.22 -1.20 16 19 C -0.12 -2.18 9.61 22.55 0.22 -1.96 16 20 C -0.10 -2.53 5.87 -20.12 -0.12 -2.65 16 21 C 0.53 12.15 8.20 70.34 0.58 12.73 16 22 O -0.54 -15.29 14.13 19.94 0.28 -15.01 16 23 O -0.50 -7.31 12.69 -56.18 -0.71 -8.02 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.08 2.56 5.85 -2.39 -0.01 2.55 16 26 H 0.05 1.55 6.23 -2.39 -0.01 1.54 16 27 H 0.40 14.92 5.30 -92.71 -0.49 14.43 16 28 H 0.10 2.81 7.93 -2.39 -0.02 2.79 16 29 H 0.10 2.81 7.96 -2.39 -0.02 2.79 16 30 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 31 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 32 H 0.14 2.73 6.71 -2.91 -0.02 2.71 16 33 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.16 2.12 7.62 -2.91 -0.02 2.10 16 35 H 0.43 2.30 9.11 -74.06 -0.67 1.62 16 Total: -1.00 -69.00 305.58 1.84 -67.16 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.72 Total: 38.12 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 4.28 Total: 10.15 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.27 Total: -102.21 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -0.48 Total: -56.92 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -69.00 1.84 -67.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832857046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.229 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds