Wall clock time and date at job start Tue Mar 31 2020 00:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38015 * 119.99687 * 2 1 4 4 C 1.38209 * 120.22686 * 180.25292 * 3 2 1 5 5 C 1.39031 * 120.23681 * 359.44810 * 4 3 2 6 6 N 1.39707 * 120.00543 * 180.25157 * 5 4 3 7 7 C 1.46495 * 119.99901 * 0.02562 * 6 5 4 8 8 C 1.50701 * 109.47001 * 179.97438 * 7 6 5 9 9 O 1.21294 * 120.00156 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00172 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00320 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99976 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00264 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99815 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99862 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47333 * 60.00203 * 15 13 11 17 17 H 1.48503 * 109.46936 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47178 * 299.99876 * 15 13 11 19 19 C 1.38626 * 119.99252 * 0.27327 * 5 4 3 20 20 C 1.39548 * 119.76958 * 0.02562 * 19 5 4 21 21 C 1.47742 * 120.11617 * 180.02562 * 20 19 5 22 22 O 1.21467 * 120.00566 * 173.75642 * 21 20 19 23 23 O 1.34717 * 119.99761 * 353.75649 * 21 20 19 24 24 H 1.08996 * 109.47290 * 263.69909 * 1 2 3 25 25 H 1.09005 * 109.47195 * 23.69890 * 1 2 3 26 26 H 1.09004 * 109.47191 * 143.69888 * 1 2 3 27 27 H 1.08000 * 119.88520 * 359.97393 * 3 2 1 28 28 H 1.08003 * 119.88461 * 179.72409 * 4 3 2 29 29 H 0.97001 * 120.00251 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.47378 * 299.99918 * 7 6 5 31 31 H 1.09001 * 109.47498 * 60.00293 * 7 6 5 32 32 H 0.97004 * 119.99794 * 0.02562 * 10 8 7 33 33 H 0.96994 * 120.00045 * 180.02562 * 14 13 11 34 34 H 1.07996 * 120.11774 * 179.97438 * 19 5 4 35 35 H 0.96703 * 116.99337 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1953 0.0000 4 6 3.5791 1.2008 -0.0053 5 6 4.2841 0.0025 0.0010 6 7 5.6811 0.0138 0.0009 7 6 6.4033 1.2884 -0.0052 8 6 7.8871 1.0250 -0.0033 9 8 8.3006 -0.1153 0.0021 10 7 8.7547 2.0564 -0.0075 11 6 10.1045 1.8169 -0.0064 12 1 10.4728 0.8016 -0.0016 13 6 10.9989 2.8802 -0.0113 14 7 10.5509 4.1156 -0.0166 15 14 12.8381 2.5537 -0.0104 16 1 13.2028 1.7726 -1.2196 17 1 13.5702 3.8457 -0.0157 18 1 13.2035 1.7832 1.2054 19 6 3.6006 -1.2035 0.0068 20 6 2.2051 -1.2091 0.0058 21 6 1.4690 -2.4901 0.0125 22 8 0.2597 -2.4951 0.1261 23 8 2.1390 -3.6526 -0.1073 24 1 -0.3633 -0.1128 1.0214 25 1 -0.3634 0.9410 -0.4131 26 1 -0.3634 -0.8282 -0.6084 27 1 1.6551 2.1295 -0.0004 28 1 4.1134 2.1394 -0.0098 29 1 6.1729 -0.8222 0.0056 30 1 6.1354 1.8536 -0.8978 31 1 6.1354 1.8621 0.8821 32 1 8.4239 2.9683 -0.0115 33 1 11.1752 4.8579 -0.0204 34 1 4.1462 -2.1355 0.0112 35 1 1.6141 -4.4648 -0.0979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832952238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:15 Heat of formation + Delta-G solvation = -125.307956 kcal Electronic energy + Delta-G solvation = -20286.989177 eV Core-core repulsion = 16862.678069 eV Total energy + Delta-G solvation = -3424.311108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.56354 -40.50014 -39.70598 -37.29339 -36.55068 -35.86598 -33.39380 -32.57446 -32.13480 -29.29298 -27.12870 -25.66913 -25.28324 -23.19822 -21.58254 -21.05956 -20.03461 -19.04728 -18.81259 -17.71370 -17.13827 -16.73072 -16.59494 -16.32669 -16.21587 -15.97388 -15.63839 -15.01581 -14.63956 -14.46089 -14.24016 -14.08103 -13.94063 -13.52731 -13.15753 -13.02891 -12.83967 -12.60341 -12.48594 -12.46638 -12.27667 -12.13820 -11.56763 -11.13909 -10.91979 -10.53057 -10.08886 -10.01175 -8.51315 -8.32745 -6.00795 -0.25331 0.56379 1.37771 1.42362 1.52444 1.59112 1.93731 2.08252 2.22798 2.43258 2.85162 3.16403 3.18086 3.84208 4.05526 4.08488 4.19521 4.33274 4.41956 4.51406 4.51985 4.56786 4.85031 4.91585 5.00809 5.08961 5.28540 5.37611 5.40618 5.59461 5.63421 5.81363 5.91893 6.30892 6.51713 6.73318 7.00628 7.05234 7.46234 7.98636 8.65246 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040828 B = 0.002974 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.647497 B = 9413.542062 C =10077.319646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.078 4.078 4 C -0.162 4.162 5 C 0.194 3.806 6 N -0.735 5.735 7 C 0.128 3.872 8 C 0.428 3.572 9 O -0.631 6.631 10 N -0.560 5.560 11 C -0.339 4.339 12 H 0.081 0.919 13 C -0.007 4.007 14 N -0.914 5.914 15 Si 0.992 3.008 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.272 1.272 19 C -0.145 4.145 20 C -0.102 4.102 21 C 0.530 3.470 22 O -0.530 6.530 23 O -0.509 6.509 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.161 0.839 28 H 0.145 0.855 29 H 0.404 0.596 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.401 0.599 33 H 0.280 0.720 34 H 0.134 0.866 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.539 -4.389 -0.253 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.094 4.094 3 C -0.096 4.096 4 C -0.184 4.184 5 C 0.090 3.910 6 N -0.366 5.366 7 C 0.000 4.000 8 C 0.216 3.784 9 O -0.519 6.519 10 N -0.196 5.196 11 C -0.469 4.469 12 H 0.099 0.901 13 C -0.208 4.208 14 N -0.554 5.554 15 Si 0.816 3.184 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.197 1.197 19 C -0.169 4.169 20 C -0.104 4.104 21 C 0.376 3.624 22 O -0.422 6.422 23 O -0.323 6.323 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.178 0.822 28 H 0.163 0.837 29 H 0.241 0.759 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.235 0.765 33 H 0.090 0.910 34 H 0.152 0.848 35 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -17.135 -4.395 -0.227 17.691 hybrid contribution 0.902 -0.641 0.039 1.107 sum -16.233 -5.036 -0.188 16.997 Atomic orbital electron populations 1.20925 0.89474 1.03279 1.02750 1.20005 0.97217 0.91280 1.00935 1.21050 0.92931 0.98003 0.97624 1.21243 0.94942 0.96946 1.05301 1.17884 0.83167 0.94388 0.95580 1.44461 1.02305 1.08147 1.81662 1.20860 0.87647 0.87412 1.04112 1.20699 0.89320 0.85198 0.83189 1.90486 1.80224 1.23264 1.57949 1.41821 1.05791 1.08275 1.63669 1.19650 0.82201 0.94484 1.50558 0.90093 1.26036 1.04715 0.94227 0.95831 1.69646 1.37706 0.98753 1.49301 0.84996 0.76617 0.77823 0.78985 1.19682 1.19437 1.19699 1.20828 0.93004 0.97297 1.05728 1.18724 0.92580 0.90425 1.08674 1.20948 0.85002 0.84798 0.71664 1.90822 1.15895 1.88091 1.47395 1.84576 1.45630 1.17517 1.84607 0.91429 0.90228 0.90977 0.82184 0.83685 0.75890 0.88233 0.88266 0.76492 0.91041 0.84829 0.70689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 8.72 71.24 0.62 -1.46 16 2 C -0.09 -2.03 5.92 -19.58 -0.12 -2.15 16 3 C -0.08 -1.51 9.65 22.21 0.21 -1.29 16 4 C -0.16 -3.59 9.31 22.45 0.21 -3.38 16 5 C 0.19 5.16 6.65 38.17 0.25 5.41 16 6 N -0.73 -22.60 5.70 -343.26 -1.96 -24.56 16 7 C 0.13 4.01 5.39 85.63 0.46 4.47 16 8 C 0.43 19.04 7.85 87.66 0.69 19.73 16 9 O -0.63 -32.88 15.24 -3.07 -0.05 -32.93 16 10 N -0.56 -27.01 5.29 -306.97 -1.62 -28.64 16 11 C -0.34 -18.46 9.68 84.04 0.81 -17.64 16 12 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 13 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 14 N -0.91 -47.18 13.05 21.66 0.28 -46.89 16 15 Si 0.99 41.27 29.55 68.60 2.03 43.29 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 C -0.15 -3.77 9.46 22.68 0.21 -3.55 16 20 C -0.10 -2.52 5.87 -20.11 -0.12 -2.64 16 21 C 0.53 12.40 8.20 70.33 0.58 12.98 16 22 O -0.53 -13.83 14.12 19.94 0.28 -13.55 16 23 O -0.51 -9.22 12.70 -56.27 -0.71 -9.94 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.14 8.04 -2.38 -0.02 1.13 16 26 H 0.07 1.61 5.85 -2.39 -0.01 1.60 16 27 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.15 2.73 6.71 -2.91 -0.02 2.71 16 29 H 0.40 13.84 7.45 -92.71 -0.69 13.15 16 30 H 0.10 2.69 7.94 -2.39 -0.02 2.67 16 31 H 0.10 2.69 7.95 -2.39 -0.02 2.67 16 32 H 0.40 18.09 7.90 -92.71 -0.73 17.35 16 33 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 34 H 0.13 3.39 7.63 -2.91 -0.02 3.36 16 35 H 0.43 3.47 9.11 -74.06 -0.67 2.79 16 Total: -1.00 -66.88 309.40 1.61 -65.27 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -0.92 Total: 37.38 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.29 Total: 10.56 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -3.30 Total: -100.09 kcal Atomic # 8 Polarization: -55.94 SS G_CDS: -0.48 Total: -56.42 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -66.88 1.61 -65.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832952238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.038 kcal (2) G-P(sol) polarization free energy of solvation -66.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds