Wall clock time and date at job start Tue Mar 31 2020 00:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00019 * 2 1 4 4 H 1.48503 * 109.46937 * 269.99897 * 3 2 1 5 5 H 1.48504 * 109.47095 * 29.99744 * 3 2 1 6 6 H 1.48501 * 109.47296 * 149.99735 * 3 2 1 7 7 C 1.37880 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99585 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46833 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46890 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46895 * 179.97438 * 11 10 9 13 13 C 1.34786 * 119.99677 * 179.97438 * 12 11 10 14 14 O 1.21513 * 119.99919 * 0.02562 * 13 12 11 15 15 C 1.48141 * 119.99474 * 179.97438 * 13 12 11 16 16 C 1.39797 * 120.89366 * 359.97438 * 15 13 12 17 17 C 1.38523 * 119.19715 * 180.02562 * 16 15 13 18 18 N 1.31446 * 121.03938 * 359.97438 * 17 16 15 19 19 C 1.32702 * 121.96277 * 359.73075 * 18 17 16 20 20 C 1.48067 * 119.66275 * 180.27051 * 19 18 17 21 21 O 1.21427 * 120.00033 * 180.26770 * 20 19 18 22 22 O 1.34676 * 119.99879 * 0.26124 * 20 19 18 23 23 C 1.39287 * 120.67579 * 0.53583 * 19 18 17 24 24 H 0.97000 * 120.00179 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46754 * 60.00317 * 9 7 2 26 26 H 1.08995 * 109.46940 * 300.00093 * 9 7 2 27 27 H 1.08994 * 109.47599 * 60.00153 * 10 9 7 28 28 H 1.09009 * 109.47190 * 299.99787 * 10 9 7 29 29 H 1.09003 * 109.46787 * 59.99955 * 11 10 9 30 30 H 1.08995 * 109.46850 * 299.99766 * 11 10 9 31 31 H 0.96994 * 120.00308 * 0.02562 * 12 11 10 32 32 H 1.08005 * 120.40530 * 359.97438 * 16 15 13 33 33 H 1.08001 * 119.47994 * 179.97438 * 17 16 15 34 34 H 0.96698 * 116.99621 * 180.02562 * 22 20 19 35 35 H 1.08002 * 120.55250 * 179.75828 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 7 6.0399 -4.0176 0.0027 13 6 7.3651 -4.2639 0.0033 14 8 8.1547 -3.3402 0.0039 15 6 7.8589 -5.6606 0.0044 16 6 6.9670 -6.7371 0.0054 17 6 7.4672 -8.0289 0.0069 18 7 8.7622 -8.2543 0.0069 19 6 9.6473 -7.2657 0.0002 20 6 11.0947 -7.5780 -0.0055 21 8 11.9099 -6.6781 -0.0067 22 8 11.5069 -8.8601 -0.0091 23 6 9.2288 -5.9372 0.0040 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8912 26 1 3.8752 -0.6803 -0.8888 27 1 3.6587 -3.1501 -0.8892 28 1 3.6579 -3.1505 0.8908 29 1 5.9142 -2.1229 0.8927 30 1 5.9156 -2.1223 -0.8873 31 1 5.4097 -4.7549 0.0019 32 1 5.9010 -6.5639 0.0058 33 1 6.7823 -8.8640 0.0081 34 1 12.4615 -9.0142 -0.0124 35 1 9.9510 -5.1341 0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833062854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:32 Heat of formation + Delta-G solvation = -97.530796 kcal Electronic energy + Delta-G solvation = -19870.021490 eV Core-core repulsion = 16446.914890 eV Total energy + Delta-G solvation = -3423.106600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37025 -40.19739 -39.15855 -36.55982 -35.78214 -33.78870 -33.07494 -32.12237 -31.40820 -27.58304 -26.05425 -24.86114 -22.92382 -22.49804 -20.98825 -20.30334 -18.78925 -18.34909 -17.25350 -16.92251 -16.52257 -16.25412 -15.85359 -15.68554 -15.65200 -14.84589 -14.48676 -14.27293 -13.95303 -13.86122 -13.65443 -12.77671 -12.51349 -12.17055 -12.01542 -11.98977 -11.35019 -11.20029 -10.97041 -10.65974 -10.47209 -10.23397 -10.08210 -9.88685 -9.87697 -9.73345 -9.29890 -9.12025 -8.61032 -6.11734 -4.11054 -0.14440 0.31794 1.82478 2.30989 2.67061 2.91809 3.27274 3.35357 3.35837 3.38715 3.73121 4.10327 4.27100 4.35424 4.39397 4.43923 4.83737 5.13613 5.18289 5.22200 5.37748 5.47999 5.51402 5.86035 5.88589 5.94973 6.11213 6.31719 6.51112 6.66973 7.05423 7.13921 7.27507 7.30748 7.47208 7.69481 7.95542 8.43708 8.91468 9.50243 11.01346 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044910 B = 0.002657 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.321738 B =10536.077164 C =11133.636611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.112 3.888 12 N -0.713 5.713 13 C 0.552 3.448 14 O -0.525 6.525 15 C -0.089 4.089 16 C -0.106 4.106 17 C 0.097 3.903 18 N -0.421 5.421 19 C 0.083 3.917 20 C 0.545 3.455 21 O -0.500 6.500 22 O -0.492 6.492 23 C -0.050 4.050 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.400 0.600 32 H 0.152 0.848 33 H 0.176 0.824 34 H 0.415 0.585 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.872 -18.563 0.018 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.010 4.010 12 N -0.364 5.364 13 C 0.337 3.663 14 O -0.402 6.402 15 C -0.100 4.100 16 C -0.127 4.127 17 C -0.063 4.063 18 N -0.133 5.133 19 C -0.053 4.053 20 C 0.386 3.614 21 O -0.387 6.387 22 O -0.302 6.302 23 C -0.071 4.071 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.236 0.764 32 H 0.170 0.830 33 H 0.193 0.807 34 H 0.273 0.727 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 18.419 -18.259 0.028 25.936 hybrid contribution 0.210 1.268 -0.026 1.286 sum 18.630 -16.991 0.002 25.214 Atomic orbital electron populations 1.69905 1.06322 1.27034 1.50784 1.25030 0.94756 0.99265 0.94405 0.86779 0.80395 0.83519 0.78616 1.20224 1.21331 1.18894 1.21071 0.89221 0.94525 1.51360 0.90988 1.19504 0.97363 0.91279 0.96763 1.21728 0.90240 1.01333 1.01887 1.21788 0.96454 0.80267 1.02478 1.46076 1.05999 1.10677 1.73698 1.18005 0.83128 0.87472 0.77730 1.90820 1.55315 1.44974 1.49092 1.20471 0.93736 0.94608 1.01200 1.22807 1.01642 0.93292 0.94959 1.22920 0.91072 0.96336 0.95960 1.67540 1.03306 1.35466 1.07002 1.19867 0.91082 0.89671 1.04718 1.20331 0.88084 0.80675 0.72284 1.90955 1.54424 1.47754 1.45553 1.84661 1.32687 1.27966 1.84900 1.22219 0.96072 0.96941 0.91853 0.92634 0.96233 0.96672 0.91952 0.91935 0.91242 0.91246 0.76445 0.82990 0.80674 0.72665 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -1.95 5.27 -26.73 -0.14 -2.09 16 11 C 0.11 1.68 5.67 -4.04 -0.02 1.66 16 12 N -0.71 -8.49 5.51 -61.15 -0.34 -8.83 16 13 C 0.55 7.21 7.80 -12.19 -0.10 7.11 16 14 O -0.53 -8.92 16.44 5.35 0.09 -8.83 16 15 C -0.09 -0.91 5.91 -104.68 -0.62 -1.53 16 16 C -0.11 -0.74 9.62 -38.89 -0.37 -1.11 16 17 C 0.10 0.66 11.17 -17.61 -0.20 0.47 16 18 N -0.42 -4.02 10.09 -9.86 -0.10 -4.11 16 19 C 0.08 0.86 6.75 -83.07 -0.56 0.30 16 20 C 0.54 5.52 8.32 34.76 0.29 5.81 16 21 O -0.50 -6.19 17.11 -19.21 -0.33 -6.52 16 22 O -0.49 -3.64 13.24 -40.43 -0.54 -4.18 16 23 C -0.05 -0.54 9.20 -38.62 -0.36 -0.90 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 26 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.40 3.48 6.61 -40.82 -0.27 3.21 16 32 H 0.15 0.61 6.53 -52.48 -0.34 0.26 16 33 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.41 0.97 9.11 45.56 0.42 1.39 16 35 H 0.16 1.93 7.33 -52.49 -0.38 1.54 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -35.49 314.71 -6.03 -41.52 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.05 Total: -0.54 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.62 Total: -3.44 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.34 Total: -39.32 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.78 Total: -19.53 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.49 -6.03 -41.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833062854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.007 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds