Wall clock time and date at job start Tue Mar 31 2020 00:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00019 * 2 1 4 4 H 1.48503 * 109.46937 * 269.99897 * 3 2 1 5 5 H 1.48504 * 109.47095 * 29.99744 * 3 2 1 6 6 H 1.48501 * 109.47296 * 149.99735 * 3 2 1 7 7 C 1.37880 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99585 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46833 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46890 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46895 * 179.97438 * 11 10 9 13 13 C 1.34786 * 119.99677 * 179.97438 * 12 11 10 14 14 O 1.21513 * 119.99919 * 0.02562 * 13 12 11 15 15 C 1.48141 * 119.99474 * 179.97438 * 13 12 11 16 16 C 1.39797 * 120.89366 * 359.97438 * 15 13 12 17 17 C 1.38523 * 119.19715 * 180.02562 * 16 15 13 18 18 N 1.31446 * 121.03938 * 359.97438 * 17 16 15 19 19 C 1.32702 * 121.96277 * 359.73075 * 18 17 16 20 20 C 1.48067 * 119.66275 * 180.27051 * 19 18 17 21 21 O 1.21427 * 120.00033 * 180.26770 * 20 19 18 22 22 O 1.34676 * 119.99879 * 0.26124 * 20 19 18 23 23 C 1.39287 * 120.67579 * 0.53583 * 19 18 17 24 24 H 0.97000 * 120.00179 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46754 * 60.00317 * 9 7 2 26 26 H 1.08995 * 109.46940 * 300.00093 * 9 7 2 27 27 H 1.08994 * 109.47599 * 60.00153 * 10 9 7 28 28 H 1.09009 * 109.47190 * 299.99787 * 10 9 7 29 29 H 1.09003 * 109.46787 * 59.99955 * 11 10 9 30 30 H 1.08995 * 109.46850 * 299.99766 * 11 10 9 31 31 H 0.96994 * 120.00308 * 0.02562 * 12 11 10 32 32 H 1.08005 * 120.40530 * 359.97438 * 16 15 13 33 33 H 1.08001 * 119.47994 * 179.97438 * 17 16 15 34 34 H 0.96698 * 116.99621 * 180.02562 * 22 20 19 35 35 H 1.08002 * 120.55250 * 179.75828 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 7 6.0399 -4.0176 0.0027 13 6 7.3651 -4.2639 0.0033 14 8 8.1547 -3.3402 0.0039 15 6 7.8589 -5.6606 0.0044 16 6 6.9670 -6.7371 0.0054 17 6 7.4672 -8.0289 0.0069 18 7 8.7622 -8.2543 0.0069 19 6 9.6473 -7.2657 0.0002 20 6 11.0947 -7.5780 -0.0055 21 8 11.9099 -6.6781 -0.0067 22 8 11.5069 -8.8601 -0.0091 23 6 9.2288 -5.9372 0.0040 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8912 26 1 3.8752 -0.6803 -0.8888 27 1 3.6587 -3.1501 -0.8892 28 1 3.6579 -3.1505 0.8908 29 1 5.9142 -2.1229 0.8927 30 1 5.9156 -2.1223 -0.8873 31 1 5.4097 -4.7549 0.0019 32 1 5.9010 -6.5639 0.0058 33 1 6.7823 -8.8640 0.0081 34 1 12.4615 -9.0142 -0.0124 35 1 9.9510 -5.1341 0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833062854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:32 Heat of formation + Delta-G solvation = -125.043284 kcal Electronic energy + Delta-G solvation = -19871.214521 eV Core-core repulsion = 16446.914890 eV Total energy + Delta-G solvation = -3424.299631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.11904 -41.05567 -40.04158 -37.26664 -37.09545 -35.28637 -34.22761 -33.14165 -32.70003 -29.15905 -26.78978 -25.95752 -24.18181 -23.35161 -22.28037 -21.51679 -19.68062 -19.14020 -18.86590 -18.02517 -17.35003 -17.03044 -16.77761 -16.76507 -16.60413 -16.21788 -15.62960 -15.45805 -14.92006 -14.76965 -14.75643 -14.48340 -13.82955 -13.67075 -13.17082 -12.74159 -12.70483 -12.69758 -12.13887 -11.99203 -11.79729 -11.58863 -11.44714 -11.31151 -11.25475 -10.81387 -10.74898 -10.52875 -10.22038 -8.28145 -6.31556 -0.83982 -0.42527 1.11219 1.37637 1.39845 1.50640 1.62168 1.75065 1.98421 2.37085 2.62925 3.08045 3.12091 3.34737 3.62617 3.64734 3.75499 4.08230 4.21088 4.24977 4.49962 4.52266 4.54163 4.75867 4.89119 4.89447 5.05679 5.24094 5.29620 5.36783 5.49984 5.57731 5.66561 6.28651 6.35867 6.44970 6.77071 6.87348 6.99542 7.33405 8.87999 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044910 B = 0.002657 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.321738 B =10536.077164 C =11133.636611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.247 1.247 7 C -0.528 4.528 8 H 0.041 0.959 9 C -0.014 4.014 10 C -0.101 4.101 11 C 0.124 3.876 12 N -0.700 5.700 13 C 0.554 3.446 14 O -0.572 6.572 15 C -0.102 4.102 16 C -0.082 4.082 17 C 0.106 3.894 18 N -0.432 5.432 19 C 0.069 3.931 20 C 0.549 3.451 21 O -0.533 6.533 22 O -0.486 6.486 23 C -0.062 4.062 24 H 0.265 0.735 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.418 0.582 32 H 0.189 0.811 33 H 0.219 0.781 34 H 0.435 0.565 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.206 -20.074 0.008 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.171 1.171 7 C -0.566 4.566 8 H 0.059 0.941 9 C -0.052 4.052 10 C -0.138 4.138 11 C 0.001 3.999 12 N -0.352 5.352 13 C 0.341 3.659 14 O -0.452 6.452 15 C -0.113 4.113 16 C -0.103 4.103 17 C -0.054 4.054 18 N -0.145 5.145 19 C -0.066 4.066 20 C 0.392 3.608 21 O -0.423 6.423 22 O -0.299 6.299 23 C -0.083 4.083 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.257 0.743 32 H 0.206 0.794 33 H 0.235 0.765 34 H 0.298 0.702 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 18.772 -19.834 0.017 27.309 hybrid contribution 0.022 1.574 -0.024 1.575 sum 18.794 -18.260 -0.006 26.204 Atomic orbital electron populations 1.70050 1.08180 1.28053 1.52803 1.25964 0.95553 1.03352 0.94394 0.85740 0.79570 0.78750 0.79089 1.19395 1.21287 1.17076 1.21471 0.91892 0.93260 1.49967 0.94087 1.19484 0.94071 0.94862 0.96831 1.21495 0.91540 0.98125 1.02679 1.21429 0.94734 0.81847 1.01927 1.45807 1.06123 1.10120 1.73143 1.18357 0.82817 0.88243 0.76509 1.90799 1.56456 1.46683 1.51243 1.20227 0.93923 0.93795 1.03334 1.23195 1.02838 0.92222 0.92006 1.23674 0.90567 0.97486 0.93684 1.67599 1.04447 1.35142 1.07266 1.19831 0.91482 0.89544 1.05717 1.20377 0.88028 0.80968 0.71477 1.90937 1.55245 1.48763 1.47322 1.84615 1.34798 1.26335 1.84134 1.22091 0.96330 0.96908 0.93015 0.92584 0.96128 0.96245 0.91174 0.91200 0.91971 0.91897 0.74300 0.79371 0.76465 0.70250 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 2 C 0.00 0.24 5.47 84.66 0.46 0.70 16 3 Si 0.94 43.35 27.47 68.60 1.88 45.23 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 7 C -0.53 -28.73 9.66 25.60 0.25 -28.48 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.10 -3.22 5.27 30.59 0.16 -3.06 16 11 C 0.12 3.47 5.67 86.38 0.49 3.96 16 12 N -0.70 -14.98 5.51 -465.68 -2.57 -17.55 16 13 C 0.55 13.83 7.80 86.87 0.68 14.51 16 14 O -0.57 -19.58 16.44 -3.75 -0.06 -19.65 16 15 C -0.10 -1.92 5.91 -19.90 -0.12 -2.04 16 16 C -0.08 -0.83 9.62 22.72 0.22 -0.61 16 17 C 0.11 1.02 11.17 84.82 0.95 1.96 16 18 N -0.43 -7.19 10.09 -185.11 -1.87 -9.06 16 19 C 0.07 1.38 6.75 41.87 0.28 1.67 16 20 C 0.55 11.05 8.32 70.43 0.59 11.64 16 21 O -0.53 -13.65 17.11 20.07 0.34 -13.31 16 22 O -0.49 -6.65 13.24 -55.85 -0.74 -7.39 16 23 C -0.06 -1.36 9.20 22.89 0.21 -1.15 16 24 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 26 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.42 5.72 6.61 -92.71 -0.61 5.11 16 32 H 0.19 0.46 6.53 -2.91 -0.02 0.44 16 33 H 0.22 0.20 8.06 -2.91 -0.02 0.17 16 34 H 0.44 1.52 9.11 -74.06 -0.67 0.85 16 35 H 0.14 3.66 7.33 -2.91 -0.02 3.64 16 Total: -1.00 -79.12 314.71 1.38 -77.73 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -0.19 Total: 3.18 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 4.29 Total: -1.39 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -4.14 Total: -84.41 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.46 Total: -40.34 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.23 kcal Total: -79.12 1.38 -77.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833062854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.310 kcal (2) G-P(sol) polarization free energy of solvation -79.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds