Wall clock time and date at job start Tue Mar 31 2020 00:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46946 * 244.88551 * 3 2 1 5 5 N 1.46902 * 109.47000 * 181.41157 * 4 3 2 6 6 C 1.46900 * 111.00173 * 61.23563 * 5 4 3 7 7 C 1.50699 * 109.46803 * 66.04687 * 6 5 4 8 8 H 1.07994 * 120.00336 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99477 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00307 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99587 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47200 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46820 * 120.00065 * 11 9 7 14 14 H 1.48496 * 109.47326 * 239.99526 * 11 9 7 15 15 C 1.46901 * 110.99997 * 297.27851 * 5 4 3 16 16 C 1.50691 * 109.47564 * 288.30241 * 15 5 4 17 17 C 1.35164 * 125.61317 * 95.52586 * 16 15 5 18 18 C 1.40311 * 107.13001 * 179.97438 * 17 16 15 19 19 C 1.36640 * 106.70252 * 0.02562 * 18 17 16 20 20 C 1.46470 * 125.99988 * 180.02562 * 19 18 17 21 21 O 1.21630 * 119.99420 * 0.02562 * 20 19 18 22 22 O 1.34889 * 120.00441 * 180.02562 * 20 19 18 23 23 O 1.33918 * 125.60528 * 275.22405 * 16 15 5 24 24 H 1.09001 * 109.46900 * 124.88429 * 3 2 1 25 25 H 1.09001 * 109.47469 * 4.88495 * 3 2 1 26 26 H 1.09003 * 109.47329 * 61.41318 * 4 3 2 27 27 H 1.08996 * 109.47692 * 301.41202 * 4 3 2 28 28 H 1.09001 * 109.47422 * 186.04648 * 6 5 4 29 29 H 1.09001 * 109.47086 * 306.05028 * 6 5 4 30 30 H 0.96998 * 119.99961 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.46887 * 48.30212 * 15 5 4 32 32 H 1.09002 * 109.47252 * 168.29731 * 15 5 4 33 33 H 1.08001 * 126.43719 * 359.97438 * 17 16 15 34 34 H 1.07998 * 126.64973 * 180.02562 * 18 17 16 35 35 H 0.96697 * 117.00505 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.6131 1.3061 5 7 4.5862 0.6447 1.2918 6 6 5.0842 1.4733 0.1857 7 6 4.6970 2.9105 0.4209 8 1 4.1366 3.1814 1.3034 9 6 5.0572 3.8796 -0.4914 10 7 5.7392 3.5498 -1.5664 11 14 4.5766 5.6611 -0.2002 12 1 3.8183 5.7677 1.0722 13 1 5.8012 6.4972 -0.1188 14 1 3.7277 6.1347 -1.3229 15 6 5.1414 -0.7136 1.2235 16 6 4.9327 -1.4087 2.5441 17 6 3.9063 -2.2350 2.8451 18 6 4.0938 -2.6617 4.1686 19 6 5.2398 -2.0661 4.6147 20 6 5.8292 -2.2225 5.9464 21 8 5.2900 -2.9370 6.7699 22 8 6.9698 -1.5741 6.2596 23 8 5.7369 -1.3137 3.6108 24 1 2.9710 0.5886 -0.8430 25 1 2.9718 -1.0231 -0.0875 26 1 2.7754 0.0109 2.1477 27 1 2.7334 1.6282 1.4058 28 1 6.1700 1.3936 0.1322 29 1 4.6480 1.1282 -0.7517 30 1 5.9929 4.2316 -2.2079 31 1 4.6376 -1.2728 0.4350 32 1 6.2081 -0.6597 1.0058 33 1 3.0944 -2.5143 2.1901 34 1 3.4559 -3.3311 4.7266 35 1 7.3209 -1.7087 7.1505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:59 Heat of formation + Delta-G solvation = -39.765868 kcal Electronic energy + Delta-G solvation = -20873.515996 eV Core-core repulsion = 17452.914272 eV Total energy + Delta-G solvation = -3420.601725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.74108 -40.02718 -38.05186 -36.32672 -36.05430 -33.22524 -32.77666 -31.45436 -30.13716 -27.68904 -25.82072 -24.18542 -23.01824 -21.67498 -20.71516 -19.96785 -18.54092 -17.74684 -17.50903 -16.64598 -16.46604 -15.60089 -15.36623 -15.07418 -14.57549 -14.36337 -13.87184 -13.75375 -13.68153 -13.22698 -13.05244 -12.89327 -12.45072 -12.16385 -11.98554 -11.80778 -11.61970 -11.39193 -11.26492 -11.12498 -10.81931 -10.75563 -10.36717 -10.06904 -10.03914 -9.42056 -8.68041 -8.56123 -7.63911 -6.17246 -4.19028 0.77767 2.19735 2.38250 2.81075 3.00103 3.03370 3.16780 3.24823 3.33749 3.37882 4.18800 4.33636 4.58720 4.80449 4.84623 5.04358 5.19894 5.23492 5.33377 5.46783 5.50618 5.55043 5.73375 5.80200 5.87610 6.10013 6.16413 6.27925 6.46004 6.86880 6.99823 7.02478 7.56695 7.66462 7.72874 7.83983 7.91678 8.26394 8.88112 9.46731 10.93126 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.004704 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.795360 B = 5950.760004 C = 7127.612556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.223 3.777 3 C -0.075 4.075 4 C 0.066 3.934 5 N -0.522 5.522 6 C 0.187 3.813 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.285 1.285 15 C 0.108 3.892 16 C 0.077 3.923 17 C -0.236 4.236 18 C -0.095 4.095 19 C -0.086 4.086 20 C 0.576 3.424 21 O -0.505 6.505 22 O -0.502 6.502 23 O -0.137 6.137 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.038 0.962 29 H 0.006 0.994 30 H 0.263 0.737 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.208 -11.898 7.816 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.094 4.094 3 C -0.116 4.116 4 C -0.064 4.064 5 N -0.245 5.245 6 C 0.063 3.937 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.142 4.142 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.211 1.211 15 C -0.019 4.019 16 C 0.023 3.977 17 C -0.255 4.255 18 C -0.115 4.115 19 C -0.136 4.136 20 C 0.421 3.579 21 O -0.396 6.396 22 O -0.313 6.313 23 O -0.031 6.031 24 H 0.143 0.857 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.056 0.944 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -0.231 -11.539 7.954 14.017 hybrid contribution 0.094 0.495 -0.116 0.518 sum -0.137 -11.044 7.838 13.543 Atomic orbital electron populations 1.81160 1.13154 1.09622 1.09546 1.29177 0.95186 0.92501 0.92570 1.20227 0.81826 1.04315 1.05268 1.22155 0.88661 1.02667 0.92927 1.62372 1.05420 1.07352 1.49396 1.19949 0.96231 0.91811 0.85704 1.21123 1.35552 0.91237 1.07134 0.91602 1.24932 0.95055 0.99194 0.95018 1.69932 1.38482 1.33877 1.11164 0.86475 0.78314 0.84633 0.78257 1.19604 1.20939 1.21086 1.20842 1.03087 0.91190 0.86827 1.23215 0.89542 0.96035 0.88954 1.21609 1.02251 1.04547 0.97111 1.21912 0.95090 0.99267 0.95237 1.20482 0.99181 1.05242 0.88728 1.18888 0.78063 0.76140 0.84838 1.90985 1.62130 1.38025 1.48413 1.84713 1.39307 1.67176 1.40141 1.84169 1.45427 1.54222 1.19258 0.85684 0.88305 0.91449 0.88491 0.94436 0.97637 0.92784 0.90736 0.88336 0.82432 0.82165 0.72494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.82 18.54 42.15 0.78 -7.04 16 2 C 0.22 3.30 15.43 -20.76 -0.32 2.98 16 3 C -0.07 -0.97 5.07 -29.52 -0.15 -1.12 16 4 C 0.07 1.00 4.97 -3.82 -0.02 0.98 16 5 N -0.52 -8.92 4.65 -237.52 -1.10 -10.02 16 6 C 0.19 3.96 4.49 -4.98 -0.02 3.93 16 7 C -0.51 -12.62 8.50 -34.44 -0.29 -12.91 16 8 H 0.07 1.64 7.11 -52.49 -0.37 1.27 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -24.12 13.29 55.43 0.74 -23.38 16 11 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.11 1.46 5.37 -4.98 -0.03 1.43 16 16 C 0.08 1.04 6.24 -35.41 -0.22 0.82 16 17 C -0.24 -2.72 9.81 -39.90 -0.39 -3.11 16 18 C -0.10 -1.14 10.62 -39.38 -0.42 -1.56 16 19 C -0.09 -1.18 7.18 -36.85 -0.26 -1.44 16 20 C 0.58 7.35 8.30 34.05 0.28 7.64 16 21 O -0.50 -7.16 17.65 -19.37 -0.34 -7.50 16 22 O -0.50 -5.24 13.44 -42.45 -0.57 -5.81 16 23 O -0.14 -2.06 10.67 4.70 0.05 -2.01 16 24 H 0.13 1.83 6.23 -51.93 -0.32 1.50 16 25 H 0.10 0.98 6.30 -51.93 -0.33 0.65 16 26 H 0.07 0.93 6.66 -51.93 -0.35 0.58 16 27 H 0.10 1.69 6.82 -51.93 -0.35 1.33 16 28 H 0.04 0.87 7.86 -51.93 -0.41 0.46 16 29 H 0.01 0.13 6.01 -51.93 -0.31 -0.19 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.07 0.80 5.90 -51.93 -0.31 0.49 16 32 H 0.10 1.34 7.82 -51.93 -0.41 0.93 16 33 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.42 2.02 9.11 45.56 0.42 2.43 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -30.95 314.80 -5.39 -36.34 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.72 Total: 0.29 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.94 Total: -0.91 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.41 Total: -40.44 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.86 Total: -15.32 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.95 -5.39 -36.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.427 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds