Wall clock time and date at job start Tue Mar 31 2020 00:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46946 * 244.88551 * 3 2 1 5 5 N 1.46902 * 109.47000 * 181.41157 * 4 3 2 6 6 C 1.46900 * 111.00173 * 61.23563 * 5 4 3 7 7 C 1.50699 * 109.46803 * 66.04687 * 6 5 4 8 8 H 1.07994 * 120.00336 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99477 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00307 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99587 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47200 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46820 * 120.00065 * 11 9 7 14 14 H 1.48496 * 109.47326 * 239.99526 * 11 9 7 15 15 C 1.46901 * 110.99997 * 297.27851 * 5 4 3 16 16 C 1.50691 * 109.47564 * 288.30241 * 15 5 4 17 17 C 1.35164 * 125.61317 * 95.52586 * 16 15 5 18 18 C 1.40311 * 107.13001 * 179.97438 * 17 16 15 19 19 C 1.36640 * 106.70252 * 0.02562 * 18 17 16 20 20 C 1.46470 * 125.99988 * 180.02562 * 19 18 17 21 21 O 1.21630 * 119.99420 * 0.02562 * 20 19 18 22 22 O 1.34889 * 120.00441 * 180.02562 * 20 19 18 23 23 O 1.33918 * 125.60528 * 275.22405 * 16 15 5 24 24 H 1.09001 * 109.46900 * 124.88429 * 3 2 1 25 25 H 1.09001 * 109.47469 * 4.88495 * 3 2 1 26 26 H 1.09003 * 109.47329 * 61.41318 * 4 3 2 27 27 H 1.08996 * 109.47692 * 301.41202 * 4 3 2 28 28 H 1.09001 * 109.47422 * 186.04648 * 6 5 4 29 29 H 1.09001 * 109.47086 * 306.05028 * 6 5 4 30 30 H 0.96998 * 119.99961 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.46887 * 48.30212 * 15 5 4 32 32 H 1.09002 * 109.47252 * 168.29731 * 15 5 4 33 33 H 1.08001 * 126.43719 * 359.97438 * 17 16 15 34 34 H 1.07998 * 126.64973 * 180.02562 * 18 17 16 35 35 H 0.96697 * 117.00505 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.6131 1.3061 5 7 4.5862 0.6447 1.2918 6 6 5.0842 1.4733 0.1857 7 6 4.6970 2.9105 0.4209 8 1 4.1366 3.1814 1.3034 9 6 5.0572 3.8796 -0.4914 10 7 5.7392 3.5498 -1.5664 11 14 4.5766 5.6611 -0.2002 12 1 3.8183 5.7677 1.0722 13 1 5.8012 6.4972 -0.1188 14 1 3.7277 6.1347 -1.3229 15 6 5.1414 -0.7136 1.2235 16 6 4.9327 -1.4087 2.5441 17 6 3.9063 -2.2350 2.8451 18 6 4.0938 -2.6617 4.1686 19 6 5.2398 -2.0661 4.6147 20 6 5.8292 -2.2225 5.9464 21 8 5.2900 -2.9370 6.7699 22 8 6.9698 -1.5741 6.2596 23 8 5.7369 -1.3137 3.6108 24 1 2.9710 0.5886 -0.8430 25 1 2.9718 -1.0231 -0.0875 26 1 2.7754 0.0109 2.1477 27 1 2.7334 1.6282 1.4058 28 1 6.1700 1.3936 0.1322 29 1 4.6480 1.1282 -0.7517 30 1 5.9929 4.2316 -2.2079 31 1 4.6376 -1.2728 0.4350 32 1 6.2081 -0.6597 1.0058 33 1 3.0944 -2.5143 2.1901 34 1 3.4559 -3.3311 4.7266 35 1 7.3209 -1.7087 7.1505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:59 Heat of formation + Delta-G solvation = -61.102129 kcal Electronic energy + Delta-G solvation = -20874.441206 eV Core-core repulsion = 17452.914272 eV Total energy + Delta-G solvation = -3421.526934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.72841 -40.97171 -39.33653 -37.32308 -37.23796 -34.76908 -34.07794 -32.53890 -31.42820 -29.12175 -27.12087 -25.52273 -24.27287 -22.69377 -21.87010 -21.13632 -19.46847 -18.89607 -18.55792 -18.22503 -17.66942 -16.90546 -16.57299 -16.23632 -16.04653 -15.50738 -15.18091 -14.96946 -14.70831 -14.32276 -14.14172 -13.94303 -13.85797 -13.47780 -13.37207 -12.96544 -12.82672 -12.76145 -12.70443 -12.44133 -12.41999 -12.11164 -11.87432 -11.50443 -11.23514 -11.01523 -10.52448 -9.66431 -8.98370 -8.13047 -6.18367 -0.20520 1.24295 1.43264 1.47648 1.48114 1.57059 1.81513 1.85677 1.85899 2.28552 2.46186 3.02424 3.22738 3.44613 3.74511 3.92066 4.10245 4.20834 4.27017 4.42341 4.45620 4.58013 4.68881 4.86713 4.88792 4.95086 5.19880 5.33610 5.40762 5.41622 5.43649 5.74035 5.95947 6.12888 6.31884 6.59605 6.66325 6.86973 6.96780 7.50295 8.96622 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.004704 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.795360 B = 5950.760004 C = 7127.612556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.246 3.754 3 C -0.063 4.063 4 C 0.070 3.930 5 N -0.538 5.538 6 C 0.201 3.799 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.014 3.986 10 N -0.925 5.925 11 Si 0.946 3.054 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.111 3.889 16 C 0.059 3.941 17 C -0.218 4.218 18 C -0.091 4.091 19 C -0.109 4.109 20 C 0.579 3.421 21 O -0.524 6.524 22 O -0.504 6.504 23 O -0.162 6.162 24 H 0.112 0.888 25 H 0.141 0.859 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.013 0.987 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.188 0.812 34 H 0.180 0.820 35 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -13.115 8.159 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.071 4.071 3 C -0.104 4.104 4 C -0.060 4.060 5 N -0.261 5.261 6 C 0.075 3.925 7 C -0.554 4.554 8 H 0.076 0.924 9 C -0.184 4.184 10 N -0.566 5.566 11 Si 0.773 3.227 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.209 1.209 15 C -0.016 4.016 16 C 0.005 3.995 17 C -0.237 4.237 18 C -0.110 4.110 19 C -0.158 4.158 20 C 0.425 3.575 21 O -0.417 6.417 22 O -0.318 6.318 23 O -0.057 6.057 24 H 0.130 0.870 25 H 0.159 0.841 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.206 0.794 34 H 0.197 0.803 35 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -0.869 -12.759 8.325 15.260 hybrid contribution 0.345 0.838 -0.138 0.917 sum -0.525 -11.920 8.187 14.470 Atomic orbital electron populations 1.81191 1.14416 1.11160 1.10774 1.29348 0.95222 0.91175 0.91362 1.20201 0.80514 1.06317 1.03372 1.22049 0.87451 1.01701 0.94753 1.62123 1.06612 1.09510 1.47847 1.19578 0.94702 0.91034 0.87137 1.21469 1.34396 0.93278 1.06297 0.92417 1.25564 0.95434 1.02322 0.95129 1.70011 1.39915 1.34711 1.11988 0.85677 0.77839 0.81133 0.78025 1.19445 1.21027 1.20938 1.20890 1.03028 0.89565 0.88167 1.23257 0.90354 0.97196 0.88658 1.21941 1.01868 1.02861 0.97047 1.22256 0.94502 0.98748 0.95543 1.20857 1.00127 1.05883 0.88977 1.18843 0.78279 0.75829 0.84541 1.90971 1.62827 1.38984 1.48899 1.84675 1.38450 1.66567 1.42103 1.84135 1.46477 1.55061 1.20028 0.87012 0.84123 0.89503 0.91352 0.96886 0.97430 0.92890 0.87217 0.88994 0.79431 0.80288 0.69914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.22 18.54 20.00 0.37 -15.85 16 2 C 0.25 6.72 15.43 89.44 1.38 8.10 16 3 C -0.06 -1.45 5.07 28.79 0.15 -1.31 16 4 C 0.07 1.99 4.97 86.30 0.43 2.42 16 5 N -0.54 -17.68 4.65 -905.38 -4.21 -21.89 16 6 C 0.20 8.45 4.49 85.56 0.38 8.83 16 7 C -0.52 -25.51 8.50 25.60 0.22 -25.29 16 8 H 0.06 2.89 7.11 -2.91 -0.02 2.87 16 9 C 0.01 0.74 5.46 84.66 0.46 1.20 16 10 N -0.93 -50.18 13.29 21.45 0.28 -49.90 16 11 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 14 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 15 C 0.11 2.74 5.37 85.55 0.46 3.19 16 16 C 0.06 1.45 6.24 24.97 0.16 1.61 16 17 C -0.22 -4.25 9.81 22.07 0.22 -4.03 16 18 C -0.09 -1.94 10.62 22.40 0.24 -1.70 16 19 C -0.11 -2.82 7.18 24.04 0.17 -2.64 16 20 C 0.58 14.19 8.30 69.97 0.58 14.78 16 21 O -0.52 -14.28 17.65 19.41 0.34 -13.94 16 22 O -0.50 -9.98 13.44 -56.65 -0.76 -10.74 16 23 O -0.16 -4.69 10.67 -5.02 -0.05 -4.75 16 24 H 0.11 3.05 6.23 -2.39 -0.01 3.03 16 25 H 0.14 2.10 6.30 -2.39 -0.02 2.09 16 26 H 0.09 2.14 6.66 -2.39 -0.02 2.12 16 27 H 0.07 2.34 6.82 -2.39 -0.02 2.32 16 28 H 0.01 0.61 7.86 -2.39 -0.02 0.59 16 29 H 0.01 0.33 6.01 -2.39 -0.01 0.32 16 30 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.11 1.91 5.90 -2.39 -0.01 1.89 16 32 H 0.09 2.40 7.82 -2.39 -0.02 2.38 16 33 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.44 3.67 9.11 -74.06 -0.67 2.99 16 Total: -1.00 -66.95 314.80 3.32 -63.62 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 0.48 Total: 4.43 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 4.84 Total: 5.15 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -3.55 Total: -87.63 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.47 Total: -29.43 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -66.95 3.32 -63.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.522 kcal (2) G-P(sol) polarization free energy of solvation -66.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds