Wall clock time and date at job start Mon Mar 30 2020 23:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00275 * 2 1 4 4 H 1.48499 * 109.47165 * 275.00279 * 3 2 1 5 5 H 1.48501 * 109.47025 * 35.00119 * 3 2 1 6 6 H 1.48501 * 109.47348 * 155.00071 * 3 2 1 7 7 C 1.38814 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99995 * 149.40083 * 7 2 1 9 9 N 1.36938 * 120.00135 * 329.40974 * 7 2 1 10 10 C 1.46504 * 119.99786 * 357.14756 * 9 7 2 11 11 C 1.50695 * 109.47081 * 89.31862 * 10 9 7 12 12 O 1.20831 * 120.00173 * 5.06253 * 11 10 9 13 13 O 1.34230 * 120.00333 * 185.06312 * 11 10 9 14 14 C 1.46494 * 120.00311 * 177.14994 * 9 7 2 15 15 C 1.50704 * 109.47065 * 85.09066 * 14 9 7 16 16 O 1.21281 * 119.99638 * 5.07557 * 15 14 9 17 17 N 1.34772 * 119.99764 * 185.07410 * 15 14 9 18 18 C 1.39926 * 119.99775 * 184.90039 * 17 15 14 19 19 C 1.38873 * 120.06853 * 144.73905 * 18 17 15 20 20 C 1.38116 * 119.92443 * 179.97438 * 19 18 17 21 21 C 1.38274 * 120.07711 * 359.97438 * 20 19 18 22 22 C 1.38293 * 120.13797 * 0.03690 * 21 20 19 23 23 C 1.38111 * 120.06994 * 359.96114 * 22 21 20 24 24 H 0.97004 * 119.99991 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47014 * 209.31989 * 10 9 7 26 26 H 1.09002 * 109.47187 * 329.32038 * 10 9 7 27 27 H 0.96693 * 117.00645 * 180.02562 * 13 11 10 28 28 H 1.08999 * 109.46896 * 325.08923 * 14 9 7 29 29 H 1.08996 * 109.47190 * 205.09167 * 14 9 7 30 30 H 0.97006 * 120.00381 * 4.90506 * 17 15 14 31 31 H 1.07996 * 120.03952 * 359.70015 * 19 18 17 32 32 H 1.08011 * 119.96101 * 179.97438 * 20 19 18 33 33 H 1.07992 * 119.93589 * 180.02562 * 21 20 19 34 34 H 1.07996 * 119.96275 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.03636 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5045 2.6198 0.8031 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 2.9774 -1.2671 -0.4766 9 7 1.4685 -2.3058 0.6025 10 6 0.1855 -2.2026 1.3021 11 6 -0.9376 -2.4735 0.3345 12 8 -0.6903 -2.8162 -0.7975 13 8 -2.2127 -2.3342 0.7300 14 6 2.1719 -3.5897 0.5480 15 6 3.1822 -3.6567 1.6643 16 8 3.2396 -2.7651 2.4844 17 7 4.0217 -4.7075 1.7511 18 6 4.8892 -4.8215 2.8430 19 6 5.1919 -6.0729 3.3635 20 6 6.0490 -6.1820 4.4410 21 6 6.6059 -5.0471 5.0012 22 6 6.3062 -3.7994 4.4854 23 6 5.4499 -3.6835 3.4080 24 1 -0.4850 0.8401 0.0004 25 1 0.1527 -2.9330 2.1105 26 1 0.0760 -1.1994 1.7142 27 1 -2.8986 -2.5194 0.0742 28 1 2.6825 -3.6839 -0.4104 29 1 1.4539 -4.4023 0.6585 30 1 4.0246 -5.3847 1.0566 31 1 4.7543 -6.9594 2.9290 32 1 6.2846 -7.1549 4.8466 33 1 7.2761 -5.1350 5.8435 34 1 6.7424 -2.9149 4.9254 35 1 5.2159 -2.7089 3.0059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:19 Heat of formation + Delta-G solvation = -60.513772 kcal Electronic energy + Delta-G solvation = -21396.880427 eV Core-core repulsion = 17975.379006 eV Total energy + Delta-G solvation = -3421.501421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.08962 -38.78252 -38.05886 -35.60136 -34.47403 -34.22464 -31.58100 -30.77264 -29.69423 -27.91719 -26.41212 -23.23234 -22.62294 -21.83363 -20.38842 -19.72881 -17.68161 -16.93367 -16.79802 -16.44161 -16.03576 -15.25469 -15.02735 -14.98031 -14.19418 -14.10699 -14.03297 -13.46641 -13.30053 -13.17559 -13.07816 -12.56251 -11.81390 -11.59872 -11.51185 -11.15411 -11.12929 -10.94933 -10.61815 -10.31841 -10.07673 -10.03155 -9.96362 -9.51666 -9.17126 -8.80047 -8.47553 -7.92524 -7.27896 -6.03727 -3.21528 1.42404 1.52901 3.18518 3.31495 3.41508 3.45735 3.52321 3.81478 3.97052 4.30922 4.54521 4.96627 5.03281 5.14202 5.23339 5.26674 5.45702 5.54164 5.71451 5.81329 5.91187 6.11345 6.14416 6.30899 6.45815 6.53830 6.65119 6.75053 6.83188 7.05304 7.24340 7.61539 7.76269 7.80966 8.03386 8.70749 8.91467 9.36302 9.61478 9.99575 11.09051 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.005105 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.791940 B = 5483.893311 C = 6478.380686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.008 3.992 3 Si 0.900 3.100 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.254 4.254 8 H 0.082 0.918 9 N -0.545 5.545 10 C 0.186 3.814 11 C 0.483 3.517 12 O -0.527 6.527 13 O -0.538 6.538 14 C 0.137 3.863 15 C 0.478 3.522 16 O -0.497 6.497 17 N -0.689 5.689 18 C 0.158 3.842 19 C -0.156 4.156 20 C -0.106 4.106 21 C -0.148 4.148 22 C -0.103 4.103 23 C -0.124 4.124 24 H 0.260 0.740 25 H 0.055 0.945 26 H 0.120 0.880 27 H 0.381 0.619 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.406 0.594 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.006 -11.780 6.302 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.190 4.190 3 Si 0.729 3.271 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.100 0.900 9 N -0.262 5.262 10 C 0.056 3.944 11 C 0.324 3.676 12 O -0.414 6.414 13 O -0.348 6.348 14 C 0.004 3.996 15 C 0.263 3.737 16 O -0.368 6.368 17 N -0.336 5.336 18 C 0.062 3.938 19 C -0.177 4.177 20 C -0.124 4.124 21 C -0.167 4.167 22 C -0.122 4.122 23 C -0.144 4.144 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.237 0.763 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.241 0.759 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.208 -10.902 6.800 14.733 hybrid contribution -0.086 0.469 -0.931 1.046 sum 7.121 -10.433 5.869 13.929 Atomic orbital electron populations 1.69953 1.05465 1.26363 1.52341 1.24661 0.95071 0.98376 1.00874 0.86314 0.79913 0.83438 0.77465 1.21680 1.21305 1.20275 1.19129 1.00864 0.86276 1.31873 0.90012 1.43521 1.16898 1.05328 1.60426 1.20487 0.80677 1.03464 0.89722 1.25254 0.82126 0.70351 0.89908 1.90501 1.84097 1.45085 1.21705 1.84626 1.18287 1.83853 1.48009 1.20650 0.93574 0.90299 0.95049 1.23458 0.81525 0.80273 0.88410 1.90646 1.69060 1.36039 1.41013 1.44084 1.38222 1.27860 1.23447 1.17937 0.91682 0.93788 0.90350 1.20906 1.02162 0.96054 0.98534 1.20865 0.97264 0.98394 0.95909 1.21053 1.01855 0.92724 1.01026 1.21081 0.97476 0.97442 0.96160 1.21445 0.96009 0.99338 0.97594 0.92988 0.92660 0.86222 0.76333 0.89941 0.90405 0.75910 0.86048 0.86212 0.86491 0.86087 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.20 9.41 55.49 0.52 -24.67 16 2 C 0.01 0.22 4.83 -17.43 -0.08 0.14 16 3 Si 0.90 21.85 29.65 -169.99 -5.04 16.81 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.81 9.64 -15.06 -0.15 -6.96 16 8 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 9 N -0.54 -13.11 1.53 -175.99 -0.27 -13.38 16 10 C 0.19 4.37 5.53 -5.19 -0.03 4.34 16 11 C 0.48 11.45 6.51 36.00 0.23 11.69 16 12 O -0.53 -13.93 17.20 -18.75 -0.32 -14.26 16 13 O -0.54 -10.90 13.42 -39.26 -0.53 -11.42 16 14 C 0.14 2.58 6.16 -5.19 -0.03 2.55 16 15 C 0.48 8.74 7.71 -10.99 -0.08 8.66 16 16 O -0.50 -11.11 13.86 5.56 0.08 -11.03 16 17 N -0.69 -9.75 5.34 -9.86 -0.05 -9.81 16 18 C 0.16 2.30 6.30 -83.69 -0.53 1.77 16 19 C -0.16 -1.86 9.97 -39.39 -0.39 -2.25 16 20 C -0.11 -1.16 10.04 -39.61 -0.40 -1.56 16 21 C -0.15 -1.69 10.04 -39.55 -0.40 -2.08 16 22 C -0.10 -1.36 10.04 -39.61 -0.40 -1.76 16 23 C -0.12 -1.96 8.70 -39.39 -0.34 -2.30 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.06 1.14 8.07 -51.93 -0.42 0.73 16 26 H 0.12 3.12 6.13 -51.93 -0.32 2.80 16 27 H 0.38 6.07 9.10 45.56 0.41 6.48 16 28 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 29 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 30 H 0.41 4.24 8.82 -40.82 -0.36 3.88 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.14 2.61 6.23 -52.49 -0.33 2.28 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -34.31 310.19 -6.63 -40.94 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -3.09 Total: 9.91 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -2.60 Total: 12.23 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.20 Total: -47.86 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.77 Total: -36.71 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.04 Total: 16.81 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.31 -6.63 -40.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.577 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds